Wall clock time and date at job start Mon Mar 30 2020 01:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35520 * 116.99816 * 2 1 4 4 C 1.39436 * 120.46329 * 179.97438 * 3 2 1 5 5 C 1.38200 * 118.50665 * 180.02562 * 4 3 2 6 6 C 1.50698 * 120.36550 * 179.97438 * 5 4 3 7 7 N 1.32454 * 119.26877 * 0.02562 * 5 4 3 8 8 C 1.32470 * 120.88674 * 359.97438 * 7 5 4 9 9 N 1.38395 * 119.18593 * 180.02562 * 8 7 5 10 10 C 1.46849 * 111.00347 * 303.95261 * 9 8 7 11 11 C 1.53037 * 109.52517 * 174.15657 * 10 9 8 12 12 C 1.53127 * 109.27534 * 59.18450 * 11 10 9 13 13 C 1.53115 * 109.15840 * 302.34529 * 12 11 10 14 14 H 1.09001 * 109.50153 * 297.66955 * 13 12 11 15 15 C 1.50702 * 109.50104 * 177.59347 * 13 12 11 16 16 H 1.08002 * 120.00299 * 0.08173 * 15 13 12 17 17 C 1.37884 * 119.99942 * 179.79731 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.46855 * 110.99517 * 179.70465 * 9 8 7 24 24 N 1.32477 * 121.62751 * 0.28103 * 8 7 5 25 25 H 1.08998 * 109.46913 * 60.00023 * 1 2 3 26 26 H 1.08997 * 109.47344 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47281 * 300.00145 * 1 2 3 28 28 H 1.08002 * 120.74790 * 0.04620 * 4 3 2 29 29 H 1.09004 * 109.47211 * 270.02597 * 6 5 4 30 30 H 1.08999 * 109.47165 * 30.02656 * 6 5 4 31 31 H 1.09001 * 109.47188 * 150.02934 * 6 5 4 32 32 H 1.09005 * 109.46042 * 54.14481 * 10 9 8 33 33 H 1.08994 * 109.46297 * 294.18224 * 10 9 8 34 34 H 1.08991 * 109.50827 * 299.24591 * 11 10 9 35 35 H 1.09001 * 109.50210 * 179.12257 * 11 10 9 36 36 H 1.08991 * 109.52203 * 182.43748 * 12 11 10 37 37 H 1.08996 * 109.51923 * 62.24797 * 12 11 10 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.42796 * 65.80641 * 23 9 8 40 40 H 1.08993 * 109.49426 * 305.83464 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4360 1.2918 0.0005 5 6 4.0210 2.5439 0.0011 6 6 5.5215 2.6837 0.0022 7 7 3.2483 3.6197 0.0016 8 6 1.9282 3.5087 0.0010 9 7 1.1545 4.6562 0.0010 10 6 1.4947 5.5204 1.1386 11 6 0.7274 6.8397 1.0261 12 6 -0.7762 6.5504 1.0127 13 6 -1.0966 5.6098 -0.1522 14 1 -0.8448 6.0979 -1.0938 15 6 -2.5654 5.2728 -0.1373 16 1 -3.2072 5.6884 0.6254 17 6 -3.0910 4.4383 -1.1010 18 7 -2.3095 3.9321 -2.0298 19 14 -4.9130 4.0266 -1.0870 20 1 -5.7039 5.2761 -1.2243 21 1 -5.2235 3.1168 -2.2189 22 1 -5.2600 3.3593 0.1934 23 6 -0.2764 4.3261 -0.0066 24 7 1.3304 2.3265 0.0056 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 4.0433 0.3987 0.0002 29 1 5.8825 2.7169 1.0302 30 1 5.9662 1.8316 -0.5117 31 1 5.8010 3.6039 -0.5109 32 1 2.5660 5.7218 1.1340 33 1 1.2234 5.0205 2.0683 34 1 1.0086 7.3467 0.1031 35 1 0.9683 7.4746 1.8787 36 1 -1.3256 7.4836 0.8892 37 1 -1.0646 6.0784 1.9519 38 1 -2.6793 3.3448 -2.7075 39 1 -0.5393 3.8311 0.9283 40 1 -0.4917 3.6608 -0.8427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596330916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:12 Heat of formation + Delta-G solvation = 17.422104 kcal Electronic energy + Delta-G solvation = -22286.035885 eV Core-core repulsion = 19101.465773 eV Total energy + Delta-G solvation = -3184.570111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98417 -38.69266 -37.68809 -34.27341 -33.26304 -32.22990 -30.59611 -29.65962 -28.57460 -26.63533 -25.03757 -24.40662 -22.68226 -21.37092 -21.30627 -18.79866 -18.01636 -17.33082 -16.41308 -15.96171 -15.55002 -15.10294 -14.56915 -14.46405 -14.40384 -13.81077 -13.68823 -13.31441 -13.05124 -12.65292 -12.47786 -12.34004 -12.20005 -11.88607 -11.74588 -11.24871 -10.99080 -10.82700 -10.58221 -10.42960 -10.23924 -10.20453 -9.80928 -9.62258 -9.14398 -9.11642 -8.93123 -8.77869 -8.37635 -7.70163 -6.01379 -4.08747 1.35225 1.55514 3.17112 3.29800 3.35005 3.37342 3.74368 4.10271 4.39458 4.41291 5.00664 5.10488 5.31424 5.40022 5.43061 5.49951 5.53319 5.57546 5.61296 5.62219 5.72685 5.81006 5.93362 5.97258 6.06763 6.29928 6.39072 6.45964 6.66859 6.70215 6.87047 6.99459 7.07521 7.18218 7.34138 7.42171 7.70700 7.91471 7.99557 8.09954 8.39387 8.67326 8.95362 9.56314 11.04061 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.006541 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.042935 B = 4279.695995 C = 5619.104210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.308 6.308 3 C 0.384 3.616 4 C -0.296 4.296 5 C 0.217 3.783 6 C -0.099 4.099 7 N -0.561 5.561 8 C 0.545 3.455 9 N -0.457 5.457 10 C 0.075 3.925 11 C -0.117 4.117 12 C -0.115 4.115 13 C 0.050 3.950 14 H 0.035 0.965 15 C -0.516 4.516 16 H 0.057 0.943 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.077 3.923 24 N -0.593 5.593 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.143 0.857 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.261 0.739 39 H 0.025 0.975 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.385 -4.431 5.199 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.212 6.212 3 C 0.195 3.805 4 C -0.321 4.321 5 C 0.070 3.930 6 C -0.157 4.157 7 N -0.285 5.285 8 C 0.190 3.810 9 N -0.176 5.176 10 C -0.051 4.051 11 C -0.155 4.155 12 C -0.153 4.153 13 C 0.031 3.969 14 H 0.053 0.947 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.138 4.138 18 N -0.522 5.522 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.048 4.048 24 N -0.329 5.329 25 H 0.087 0.913 26 H 0.113 0.887 27 H 0.080 0.920 28 H 0.160 0.840 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.929 -3.715 4.624 12.435 hybrid contribution -1.066 -1.454 0.391 1.845 sum 9.864 -5.170 5.014 12.213 Atomic orbital electron populations 1.22948 0.76370 1.02708 1.03750 1.86166 1.23630 1.24412 1.86962 1.19961 0.89181 0.84738 0.86579 1.21372 0.92492 1.00028 1.18194 1.21242 0.96788 0.87092 0.87854 1.20699 0.87817 1.03814 1.03323 1.67933 1.04680 1.33103 1.22829 1.20952 0.86486 0.87437 0.86150 1.58596 1.09168 1.10253 1.39541 1.22065 1.00503 0.93508 0.89062 1.21663 0.97115 0.95191 1.01491 1.21740 0.92931 1.00236 1.00384 1.18782 0.94082 0.90420 0.93628 0.94651 1.21079 0.92819 1.29056 1.12490 0.92459 1.25002 0.97695 0.95854 0.95234 1.69872 1.34833 1.32331 1.15191 0.86679 0.85646 0.78331 0.77462 1.20223 1.21310 1.20326 1.22604 0.78078 1.01638 1.02502 1.68184 1.40988 0.98413 1.25334 0.91269 0.88747 0.91961 0.83951 0.89949 0.90328 0.89944 0.90109 0.94747 0.91343 0.92265 0.92821 0.93484 0.92871 0.95662 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.41 101.05 1.05 1.62 16 2 O -0.31 -5.13 10.49 -18.25 -0.19 -5.33 16 3 C 0.38 7.02 7.53 -16.72 -0.13 6.89 16 4 C -0.30 -4.54 9.80 -39.15 -0.38 -4.92 16 5 C 0.22 3.31 6.81 -82.34 -0.56 2.75 16 6 C -0.10 -1.00 10.21 36.00 0.37 -0.63 16 7 N -0.56 -10.49 9.59 -10.23 -0.10 -10.58 16 8 C 0.54 11.52 7.17 -322.87 -2.31 9.20 16 9 N -0.46 -10.04 4.71 -175.44 -0.83 -10.86 16 10 C 0.07 1.39 5.33 -3.83 -0.02 1.37 16 11 C -0.12 -2.06 6.09 -26.65 -0.16 -2.22 16 12 C -0.12 -2.38 5.23 -26.61 -0.14 -2.52 16 13 C 0.05 1.25 2.26 -91.69 -0.21 1.04 16 14 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.52 -13.94 8.56 -34.44 -0.29 -14.24 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 18 N -0.88 -25.06 11.34 55.43 0.63 -24.43 16 19 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 C 0.08 1.88 3.68 -3.83 -0.01 1.86 16 24 N -0.59 -12.49 7.62 -13.99 -0.11 -12.59 16 25 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 26 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 28 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.40 7.55 -51.93 -0.39 1.00 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.02 0.64 8.09 -51.93 -0.42 0.21 16 40 H 0.12 3.31 5.66 -51.93 -0.29 3.02 16 LS Contribution 326.03 15.07 4.91 4.91 Total: -1.00 -30.21 326.03 -9.74 -39.95 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.14 Total: 1.12 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.90 Total: 1.86 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.40 Total: -58.47 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.19 Total: -5.33 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.21 -9.74 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.373 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds