Wall clock time and date at job start Mon Mar 30 2020 01:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35520 * 116.99816 * 2 1 4 4 C 1.39436 * 120.46329 * 179.97438 * 3 2 1 5 5 C 1.38200 * 118.50665 * 180.02562 * 4 3 2 6 6 C 1.50698 * 120.36550 * 179.97438 * 5 4 3 7 7 N 1.32454 * 119.26877 * 0.02562 * 5 4 3 8 8 C 1.32470 * 120.88674 * 359.97438 * 7 5 4 9 9 N 1.38395 * 119.18593 * 180.02562 * 8 7 5 10 10 C 1.46849 * 111.00347 * 303.95261 * 9 8 7 11 11 C 1.53037 * 109.52517 * 174.15657 * 10 9 8 12 12 C 1.53127 * 109.27534 * 59.18450 * 11 10 9 13 13 C 1.53115 * 109.15840 * 302.34529 * 12 11 10 14 14 H 1.09001 * 109.50153 * 297.66955 * 13 12 11 15 15 C 1.50702 * 109.50104 * 177.59347 * 13 12 11 16 16 H 1.08002 * 120.00299 * 0.08173 * 15 13 12 17 17 C 1.37884 * 119.99942 * 179.79731 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.46855 * 110.99517 * 179.70465 * 9 8 7 24 24 N 1.32477 * 121.62751 * 0.28103 * 8 7 5 25 25 H 1.08998 * 109.46913 * 60.00023 * 1 2 3 26 26 H 1.08997 * 109.47344 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47281 * 300.00145 * 1 2 3 28 28 H 1.08002 * 120.74790 * 0.04620 * 4 3 2 29 29 H 1.09004 * 109.47211 * 270.02597 * 6 5 4 30 30 H 1.08999 * 109.47165 * 30.02656 * 6 5 4 31 31 H 1.09001 * 109.47188 * 150.02934 * 6 5 4 32 32 H 1.09005 * 109.46042 * 54.14481 * 10 9 8 33 33 H 1.08994 * 109.46297 * 294.18224 * 10 9 8 34 34 H 1.08991 * 109.50827 * 299.24591 * 11 10 9 35 35 H 1.09001 * 109.50210 * 179.12257 * 11 10 9 36 36 H 1.08991 * 109.52203 * 182.43748 * 12 11 10 37 37 H 1.08996 * 109.51923 * 62.24797 * 12 11 10 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.42796 * 65.80641 * 23 9 8 40 40 H 1.08993 * 109.49426 * 305.83464 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4360 1.2918 0.0005 5 6 4.0210 2.5439 0.0011 6 6 5.5215 2.6837 0.0022 7 7 3.2483 3.6197 0.0016 8 6 1.9282 3.5087 0.0010 9 7 1.1545 4.6562 0.0010 10 6 1.4947 5.5204 1.1386 11 6 0.7274 6.8397 1.0261 12 6 -0.7762 6.5504 1.0127 13 6 -1.0966 5.6098 -0.1522 14 1 -0.8448 6.0979 -1.0938 15 6 -2.5654 5.2728 -0.1373 16 1 -3.2072 5.6884 0.6254 17 6 -3.0910 4.4383 -1.1010 18 7 -2.3095 3.9321 -2.0298 19 14 -4.9130 4.0266 -1.0870 20 1 -5.7039 5.2761 -1.2243 21 1 -5.2235 3.1168 -2.2189 22 1 -5.2600 3.3593 0.1934 23 6 -0.2764 4.3261 -0.0066 24 7 1.3304 2.3265 0.0056 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 4.0433 0.3987 0.0002 29 1 5.8825 2.7169 1.0302 30 1 5.9662 1.8316 -0.5117 31 1 5.8010 3.6039 -0.5109 32 1 2.5660 5.7218 1.1340 33 1 1.2234 5.0205 2.0683 34 1 1.0086 7.3467 0.1031 35 1 0.9683 7.4746 1.8787 36 1 -1.3256 7.4836 0.8892 37 1 -1.0646 6.0784 1.9519 38 1 -2.6793 3.3448 -2.7075 39 1 -0.5393 3.8311 0.9283 40 1 -0.4917 3.6608 -0.8427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596330916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:11 Heat of formation + Delta-G solvation = -1.468427 kcal Electronic energy + Delta-G solvation = -22286.855040 eV Core-core repulsion = 19101.465773 eV Total energy + Delta-G solvation = -3185.389266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.39625 -40.18149 -39.14586 -35.85610 -34.93109 -33.88123 -31.97789 -31.46837 -29.76777 -27.83652 -27.00579 -26.00126 -24.17202 -23.03444 -22.71618 -20.51993 -19.47622 -18.78037 -18.27380 -17.35948 -17.21736 -16.44624 -16.35486 -15.96360 -15.75984 -15.30453 -15.22268 -14.66525 -14.55223 -14.24424 -14.03132 -13.70203 -13.49927 -13.10450 -12.97263 -12.87069 -12.69106 -12.56753 -12.31727 -12.20440 -11.87375 -11.77745 -11.49500 -11.10237 -10.93226 -10.86777 -10.63736 -10.42379 -10.24797 -9.25278 -8.10160 -6.25806 -0.01041 0.20449 1.40865 1.42048 1.49865 1.88440 2.26563 2.42986 2.71434 3.07276 3.19521 3.70892 3.86888 4.06081 4.07788 4.24051 4.27285 4.27884 4.32856 4.38124 4.49497 4.64248 4.74135 4.79803 4.82609 4.85252 4.89476 4.99018 5.01940 5.19004 5.25229 5.30365 5.40061 5.58547 5.64322 5.86098 5.90548 5.95194 6.11198 6.35810 6.41958 6.85666 7.20978 7.43176 8.93731 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.006541 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.042935 B = 4279.695995 C = 5619.104210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.304 6.304 3 C 0.359 3.641 4 C -0.280 4.280 5 C 0.212 3.788 6 C -0.093 4.093 7 N -0.569 5.569 8 C 0.521 3.479 9 N -0.474 5.474 10 C 0.076 3.924 11 C -0.107 4.107 12 C -0.109 4.109 13 C 0.046 3.954 14 H -0.002 1.002 15 C -0.536 4.536 16 H 0.058 0.942 17 C 0.016 3.984 18 N -0.913 5.913 19 Si 0.955 3.045 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.271 1.271 23 C 0.105 3.895 24 N -0.628 5.628 25 H 0.039 0.961 26 H 0.137 0.863 27 H 0.047 0.953 28 H 0.182 0.818 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.260 0.740 39 H 0.005 0.995 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.110 -4.944 6.297 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.208 6.208 3 C 0.171 3.829 4 C -0.305 4.305 5 C 0.067 3.933 6 C -0.150 4.150 7 N -0.294 5.294 8 C 0.165 3.835 9 N -0.192 5.192 10 C -0.049 4.049 11 C -0.145 4.145 12 C -0.147 4.147 13 C 0.027 3.973 14 H 0.017 0.983 15 C -0.574 4.574 16 H 0.077 0.923 17 C -0.183 4.183 18 N -0.551 5.551 19 Si 0.780 3.220 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.021 4.021 24 N -0.365 5.365 25 H 0.058 0.942 26 H 0.155 0.845 27 H 0.066 0.934 28 H 0.199 0.801 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.023 0.977 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.685 -4.239 5.735 14.552 hybrid contribution -1.494 -1.371 0.043 2.028 sum 11.191 -5.610 5.777 13.788 Atomic orbital electron populations 1.22985 0.75993 1.04716 1.01554 1.86174 1.23935 1.23723 1.86971 1.20463 0.90543 0.84441 0.87409 1.21853 0.91352 1.01657 1.15602 1.22207 0.98985 0.86232 0.85925 1.20880 0.83678 1.05256 1.05194 1.67995 1.03538 1.34700 1.23139 1.20995 0.87490 0.87177 0.87790 1.58602 1.07624 1.11551 1.41473 1.22175 1.01580 0.93240 0.87940 1.21633 0.94449 0.95277 1.03130 1.21628 0.95521 0.99286 0.98253 1.18739 0.93456 0.91385 0.93739 0.98337 1.21456 0.94162 1.29207 1.12607 0.92333 1.25789 1.01982 0.95686 0.94863 1.70045 1.36568 1.32769 1.15749 0.85665 0.80470 0.78253 0.77593 1.19417 1.21105 1.19579 1.21970 0.80257 1.00230 0.99655 1.68068 1.42584 0.99382 1.26478 0.94193 0.84524 0.93426 0.80090 0.87631 0.87283 0.89861 0.88377 0.94996 0.91708 0.88126 0.92150 0.93396 0.93139 0.97711 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 10.41 113.37 1.18 2.51 16 2 O -0.30 -10.06 10.49 -88.23 -0.93 -10.98 16 3 C 0.36 13.09 7.53 84.85 0.64 13.73 16 4 C -0.28 -7.99 9.80 22.55 0.22 -7.76 16 5 C 0.21 5.98 6.81 42.46 0.29 6.27 16 6 C -0.09 -1.50 10.21 71.24 0.73 -0.78 16 7 N -0.57 -20.82 9.59 -186.27 -1.79 -22.61 16 8 C 0.52 22.52 7.17 261.51 1.87 24.39 16 9 N -0.47 -21.46 4.71 -708.96 -3.34 -24.80 16 10 C 0.08 2.80 5.33 86.33 0.46 3.26 16 11 C -0.11 -3.67 6.09 30.65 0.19 -3.48 16 12 C -0.11 -4.53 5.23 30.68 0.16 -4.37 16 13 C 0.05 2.39 2.26 -11.49 -0.03 2.37 16 14 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 15 C -0.54 -29.93 8.56 25.60 0.22 -29.71 16 16 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 17 C 0.02 0.91 5.31 84.66 0.45 1.36 16 18 N -0.91 -54.12 11.34 21.45 0.24 -53.88 16 19 Si 0.95 43.90 29.54 68.60 2.03 45.92 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 C 0.11 5.44 3.68 86.32 0.32 5.76 16 24 N -0.63 -27.45 7.62 -310.87 -2.37 -29.82 16 25 H 0.04 1.47 8.12 -2.39 -0.02 1.45 16 26 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 27 H 0.05 1.61 8.12 -2.38 -0.02 1.59 16 28 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.11 1.15 8.09 -2.39 -0.02 1.13 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 3.26 7.55 -2.38 -0.02 3.24 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 38 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 39 H 0.00 0.25 8.09 -2.39 -0.02 0.23 16 40 H 0.08 4.91 5.66 -2.39 -0.01 4.89 16 Total: -1.00 -69.85 326.03 1.57 -68.28 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 1.02 Total: 14.33 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 6.70 Total: 13.55 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -7.25 Total: -131.11 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.93 Total: -10.98 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -69.85 1.57 -68.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.814 kcal (2) G-P(sol) polarization free energy of solvation -69.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds