Wall clock time and date at job start Mon Mar 30 2020 01:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35513 * 117.00169 * 2 1 4 4 C 1.39440 * 120.46855 * 179.97438 * 3 2 1 5 5 C 1.38192 * 118.51143 * 180.02562 * 4 3 2 6 6 C 1.50693 * 120.36780 * 180.02562 * 5 4 3 7 7 N 1.32466 * 119.26534 * 359.97438 * 5 4 3 8 8 C 1.32463 * 120.88754 * 0.02562 * 7 5 4 9 9 N 1.38403 * 119.18629 * 179.97438 * 8 7 5 10 10 C 1.46854 * 110.99619 * 303.95278 * 9 8 7 11 11 C 1.53037 * 109.51886 * 185.84376 * 10 9 8 12 12 C 1.53126 * 109.27801 * 300.81620 * 11 10 9 13 13 C 1.53124 * 109.15878 * 57.65645 * 12 11 10 14 14 H 1.08999 * 109.50059 * 62.28737 * 13 12 11 15 15 C 1.50696 * 109.50007 * 182.40592 * 13 12 11 16 16 H 1.07997 * 120.00547 * 0.02562 * 15 13 12 17 17 C 1.37876 * 119.99728 * 180.02562 * 15 13 12 18 18 N 1.31519 * 120.00108 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00080 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46956 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47216 * 119.99769 * 19 17 15 22 22 H 1.48507 * 109.46853 * 239.99835 * 19 17 15 23 23 C 1.46844 * 111.00167 * 68.15977 * 9 8 7 24 24 N 1.32482 * 121.62932 * 0.27239 * 8 7 5 25 25 H 1.09003 * 109.47116 * 59.99629 * 1 2 3 26 26 H 1.08997 * 109.47378 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47051 * 300.00109 * 1 2 3 28 28 H 1.08003 * 120.74718 * 0.04707 * 4 3 2 29 29 H 1.08997 * 109.47385 * 269.97518 * 6 5 4 30 30 H 1.08997 * 109.47503 * 29.97698 * 6 5 4 31 31 H 1.09007 * 109.47443 * 149.97815 * 6 5 4 32 32 H 1.08994 * 109.46310 * 65.82602 * 10 9 8 33 33 H 1.09004 * 109.45281 * 305.84758 * 10 9 8 34 34 H 1.09000 * 109.50480 * 180.88135 * 11 10 9 35 35 H 1.09002 * 109.53848 * 60.77851 * 11 10 9 36 36 H 1.08998 * 109.52297 * 177.56592 * 12 11 10 37 37 H 1.08999 * 109.51925 * 297.75795 * 12 11 10 38 38 H 0.96997 * 120.00064 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.46133 * 294.17885 * 23 9 8 40 40 H 1.09002 * 109.46165 * 54.15524 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4360 1.2917 0.0005 5 6 4.0210 2.5437 0.0011 6 6 5.5215 2.6835 0.0011 7 7 3.2482 3.6196 0.0005 8 6 1.9283 3.5087 0.0000 9 7 1.1545 4.6563 0.0000 10 6 1.4949 5.5203 1.1376 11 6 0.5255 6.7034 1.1890 12 6 0.6196 7.4914 -0.1205 13 6 0.3081 6.5569 -1.2929 14 1 -0.7128 6.1861 -1.2012 15 6 0.4562 7.3101 -2.5897 16 1 0.7441 8.3509 -2.5799 17 6 0.2242 6.6703 -3.7888 18 7 -0.1259 5.4026 -3.8008 19 14 0.4085 7.6037 -5.3964 20 1 0.8085 9.0052 -5.1120 21 1 1.4489 6.9511 -6.2312 22 1 -0.8862 7.5968 -6.1239 23 6 1.2837 5.3780 -1.2723 24 7 1.3304 2.3265 0.0054 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.0433 0.3986 0.0002 29 1 5.8833 2.7172 1.0287 30 1 5.9659 1.8312 -0.5128 31 1 5.8007 3.6035 -0.5127 32 1 2.5135 5.8902 1.0208 33 1 1.4198 4.9488 2.0628 34 1 0.7879 7.3529 2.0241 35 1 -0.4922 6.3355 1.3200 36 1 -0.1002 8.3098 -0.1058 37 1 1.6268 7.8929 -0.2325 38 1 -0.2895 4.9527 -4.6444 39 1 2.3034 5.7485 -1.3778 40 1 1.0553 4.7034 -2.0974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596330919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:15 Heat of formation + Delta-G solvation = 17.814197 kcal Electronic energy + Delta-G solvation = -22092.414855 eV Core-core repulsion = 18907.861746 eV Total energy + Delta-G solvation = -3184.553109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05873 -38.78309 -37.63560 -34.24395 -33.30294 -32.34291 -30.43658 -29.56517 -28.77051 -26.77945 -24.98754 -24.49449 -22.44129 -21.69931 -21.31028 -18.90089 -17.95484 -17.45396 -16.48351 -16.05708 -15.54105 -15.23714 -14.61881 -14.49480 -14.42336 -13.88769 -13.67511 -13.20657 -12.81017 -12.72771 -12.52433 -12.32502 -12.21938 -11.91609 -11.88919 -11.26521 -10.99188 -10.77273 -10.62349 -10.44336 -10.21349 -10.14092 -9.76581 -9.64614 -9.20565 -9.04580 -8.95316 -8.70622 -8.37881 -7.81127 -6.00465 -4.07462 1.16467 1.42507 3.00726 3.29239 3.37564 3.41358 3.76610 3.96399 4.31598 4.42912 4.92545 5.09520 5.27019 5.29250 5.33651 5.41741 5.42877 5.52019 5.61844 5.63922 5.67770 5.79548 5.86895 5.92499 6.15601 6.27129 6.43023 6.47794 6.69059 6.76313 6.93476 7.01755 7.08378 7.09567 7.30801 7.56833 7.69692 7.92250 7.98010 8.11106 8.44090 8.53779 8.97757 9.57643 11.05029 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.005622 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.046114 B = 4979.359821 C = 5319.956837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.306 6.306 3 C 0.369 3.631 4 C -0.268 4.268 5 C 0.205 3.795 6 C -0.102 4.102 7 N -0.563 5.563 8 C 0.551 3.449 9 N -0.481 5.481 10 C 0.074 3.926 11 C -0.114 4.114 12 C -0.112 4.112 13 C 0.055 3.945 14 H 0.037 0.963 15 C -0.513 4.513 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.886 5.886 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.078 3.922 24 N -0.553 5.553 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.147 0.853 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.260 0.740 39 H 0.025 0.975 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.574 -8.351 9.228 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.210 6.210 3 C 0.180 3.820 4 C -0.291 4.291 5 C 0.060 3.940 6 C -0.160 4.160 7 N -0.287 5.287 8 C 0.197 3.803 9 N -0.207 5.207 10 C -0.054 4.054 11 C -0.152 4.152 12 C -0.150 4.150 13 C 0.036 3.964 14 H 0.056 0.944 15 C -0.551 4.551 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.525 5.525 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.046 4.046 24 N -0.284 5.284 25 H 0.085 0.915 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.164 0.836 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.542 -8.143 9.147 13.442 hybrid contribution 1.004 -0.177 -1.082 1.486 sum 6.546 -8.320 8.066 13.309 Atomic orbital electron populations 1.22939 0.76597 1.02811 1.03436 1.86189 1.23538 1.24122 1.87187 1.19963 0.89171 0.84874 0.87975 1.21561 0.92651 1.00211 1.14697 1.21367 0.97104 0.87343 0.88232 1.20743 0.87807 1.04031 1.03382 1.68622 1.06982 1.33818 1.19293 1.20983 0.83926 0.89984 0.85395 1.59540 1.49929 1.04168 1.07109 1.21965 0.98305 0.93675 0.91441 1.21616 0.99460 0.95572 0.98526 1.21700 1.00351 0.98432 0.94536 1.18713 0.95478 0.90253 0.91985 0.94445 1.21204 1.46556 0.96935 0.90442 0.92264 1.25034 0.94889 0.94930 0.99211 1.69894 1.46766 1.09659 1.26147 0.86551 0.77692 0.80144 0.83734 1.19697 1.21122 1.20970 1.22593 0.98502 0.97566 0.85979 1.67755 1.41202 0.98101 1.21342 0.91516 0.88611 0.91954 0.83569 0.89864 0.90267 0.89798 0.93666 0.92662 0.92582 0.91608 0.92952 0.93397 0.92998 0.95692 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.41 101.05 1.05 1.53 16 2 O -0.31 -4.64 10.49 -18.23 -0.19 -4.83 16 3 C 0.37 6.37 7.53 -16.71 -0.13 6.25 16 4 C -0.27 -3.99 9.79 -39.15 -0.38 -4.37 16 5 C 0.21 3.19 6.81 -82.34 -0.56 2.63 16 6 C -0.10 -1.10 10.21 36.00 0.37 -0.73 16 7 N -0.56 -10.85 9.64 -10.23 -0.10 -10.95 16 8 C 0.55 11.64 6.25 -322.87 -2.02 9.62 16 9 N -0.48 -10.66 4.71 -175.44 -0.83 -11.49 16 10 C 0.07 1.40 5.18 -3.83 -0.02 1.38 16 11 C -0.11 -2.06 6.09 -26.65 -0.16 -2.22 16 12 C -0.11 -2.36 5.23 -26.60 -0.14 -2.50 16 13 C 0.05 1.39 2.26 -91.69 -0.21 1.18 16 14 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 15 C -0.51 -14.05 8.56 -34.44 -0.29 -14.34 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 18 N -0.89 -25.62 11.34 55.43 0.63 -24.99 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.08 1.95 4.36 -3.84 -0.02 1.94 16 24 N -0.55 -11.17 9.41 -13.99 -0.13 -11.30 16 25 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 28 H 0.15 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.87 7.91 -51.93 -0.41 0.46 16 33 H 0.05 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.10 2.95 6.07 -51.93 -0.32 2.64 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -30.98 328.21 -9.47 -40.46 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.18 Total: -0.10 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -2.60 Total: 1.96 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.43 Total: -58.73 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.19 Total: -4.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.98 -9.47 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.270 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds