Wall clock time and date at job start Mon Mar 30 2020 01:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35513 * 117.00169 * 2 1 4 4 C 1.39440 * 120.46855 * 179.97438 * 3 2 1 5 5 C 1.38192 * 118.51143 * 180.02562 * 4 3 2 6 6 C 1.50693 * 120.36780 * 180.02562 * 5 4 3 7 7 N 1.32466 * 119.26534 * 359.97438 * 5 4 3 8 8 C 1.32463 * 120.88754 * 0.02562 * 7 5 4 9 9 N 1.38403 * 119.18629 * 179.97438 * 8 7 5 10 10 C 1.46854 * 110.99619 * 303.95278 * 9 8 7 11 11 C 1.53037 * 109.51886 * 185.84376 * 10 9 8 12 12 C 1.53126 * 109.27801 * 300.81620 * 11 10 9 13 13 C 1.53124 * 109.15878 * 57.65645 * 12 11 10 14 14 H 1.08999 * 109.50059 * 62.28737 * 13 12 11 15 15 C 1.50696 * 109.50007 * 182.40592 * 13 12 11 16 16 H 1.07997 * 120.00547 * 0.02562 * 15 13 12 17 17 C 1.37876 * 119.99728 * 180.02562 * 15 13 12 18 18 N 1.31519 * 120.00108 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00080 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46956 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47216 * 119.99769 * 19 17 15 22 22 H 1.48507 * 109.46853 * 239.99835 * 19 17 15 23 23 C 1.46844 * 111.00167 * 68.15977 * 9 8 7 24 24 N 1.32482 * 121.62932 * 0.27239 * 8 7 5 25 25 H 1.09003 * 109.47116 * 59.99629 * 1 2 3 26 26 H 1.08997 * 109.47378 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47051 * 300.00109 * 1 2 3 28 28 H 1.08003 * 120.74718 * 0.04707 * 4 3 2 29 29 H 1.08997 * 109.47385 * 269.97518 * 6 5 4 30 30 H 1.08997 * 109.47503 * 29.97698 * 6 5 4 31 31 H 1.09007 * 109.47443 * 149.97815 * 6 5 4 32 32 H 1.08994 * 109.46310 * 65.82602 * 10 9 8 33 33 H 1.09004 * 109.45281 * 305.84758 * 10 9 8 34 34 H 1.09000 * 109.50480 * 180.88135 * 11 10 9 35 35 H 1.09002 * 109.53848 * 60.77851 * 11 10 9 36 36 H 1.08998 * 109.52297 * 177.56592 * 12 11 10 37 37 H 1.08999 * 109.51925 * 297.75795 * 12 11 10 38 38 H 0.96997 * 120.00064 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.46133 * 294.17885 * 23 9 8 40 40 H 1.09002 * 109.46165 * 54.15524 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4360 1.2917 0.0005 5 6 4.0210 2.5437 0.0011 6 6 5.5215 2.6835 0.0011 7 7 3.2482 3.6196 0.0005 8 6 1.9283 3.5087 0.0000 9 7 1.1545 4.6563 0.0000 10 6 1.4949 5.5203 1.1376 11 6 0.5255 6.7034 1.1890 12 6 0.6196 7.4914 -0.1205 13 6 0.3081 6.5569 -1.2929 14 1 -0.7128 6.1861 -1.2012 15 6 0.4562 7.3101 -2.5897 16 1 0.7441 8.3509 -2.5799 17 6 0.2242 6.6703 -3.7888 18 7 -0.1259 5.4026 -3.8008 19 14 0.4085 7.6037 -5.3964 20 1 0.8085 9.0052 -5.1120 21 1 1.4489 6.9511 -6.2312 22 1 -0.8862 7.5968 -6.1239 23 6 1.2837 5.3780 -1.2723 24 7 1.3304 2.3265 0.0054 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.0433 0.3986 0.0002 29 1 5.8833 2.7172 1.0287 30 1 5.9659 1.8312 -0.5128 31 1 5.8007 3.6035 -0.5127 32 1 2.5135 5.8902 1.0208 33 1 1.4198 4.9488 2.0628 34 1 0.7879 7.3529 2.0241 35 1 -0.4922 6.3355 1.3200 36 1 -0.1002 8.3098 -0.1058 37 1 1.6268 7.8929 -0.2325 38 1 -0.2895 4.9527 -4.6444 39 1 2.3034 5.7485 -1.3778 40 1 1.0553 4.7034 -2.0974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596330919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:14 Heat of formation + Delta-G solvation = -2.832536 kcal Electronic energy + Delta-G solvation = -22093.310164 eV Core-core repulsion = 18907.861746 eV Total energy + Delta-G solvation = -3185.448418 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.42552 -40.20244 -39.09701 -35.81817 -34.93014 -34.01830 -31.85523 -31.43576 -29.86224 -27.85473 -27.01957 -26.06833 -23.84503 -23.32639 -22.83713 -20.58032 -19.37763 -18.89038 -18.31669 -17.33640 -17.25167 -16.45415 -16.42701 -16.07761 -15.63359 -15.37361 -15.16848 -14.66433 -14.34429 -14.25342 -14.18119 -13.70558 -13.47674 -13.19285 -12.95464 -12.91606 -12.62565 -12.55607 -12.23248 -12.18611 -11.96693 -11.78366 -11.47796 -11.09639 -10.90370 -10.84204 -10.66902 -10.49608 -10.01609 -9.49390 -8.12185 -6.27635 -0.19165 0.12165 1.38738 1.40338 1.52507 1.80016 2.30924 2.42446 2.60321 3.09902 3.15933 3.69295 3.79885 4.06579 4.12778 4.19345 4.22757 4.32861 4.33906 4.40372 4.57564 4.66839 4.72033 4.74400 4.80680 4.83467 4.86734 4.91494 5.03771 5.20750 5.22488 5.30300 5.32451 5.57755 5.76853 5.81214 5.90217 5.95715 6.07500 6.37374 6.42757 6.85661 7.11003 7.41542 8.92108 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.005622 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.046114 B = 4979.359821 C = 5319.956837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.302 6.302 3 C 0.350 3.650 4 C -0.251 4.251 5 C 0.195 3.805 6 C -0.097 4.097 7 N -0.582 5.582 8 C 0.524 3.476 9 N -0.496 5.496 10 C 0.076 3.924 11 C -0.105 4.105 12 C -0.106 4.106 13 C 0.051 3.949 14 H 0.000 1.000 15 C -0.531 4.531 16 H 0.061 0.939 17 C 0.010 3.990 18 N -0.917 5.917 19 Si 0.957 3.043 20 H -0.262 1.262 21 H -0.283 1.283 22 H -0.280 1.280 23 C 0.106 3.894 24 N -0.581 5.581 25 H 0.043 0.957 26 H 0.138 0.862 27 H 0.056 0.944 28 H 0.188 0.812 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.259 0.741 39 H 0.008 0.992 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.301 -8.854 10.129 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.206 6.206 3 C 0.163 3.837 4 C -0.274 4.274 5 C 0.050 3.950 6 C -0.154 4.154 7 N -0.306 5.306 8 C 0.169 3.831 9 N -0.222 5.222 10 C -0.051 4.051 11 C -0.143 4.143 12 C -0.143 4.143 13 C 0.032 3.968 14 H 0.018 0.982 15 C -0.569 4.569 16 H 0.079 0.921 17 C -0.188 4.188 18 N -0.556 5.556 19 Si 0.782 3.218 20 H -0.186 1.186 21 H -0.209 1.209 22 H -0.205 1.205 23 C -0.020 4.020 24 N -0.314 5.314 25 H 0.062 0.938 26 H 0.156 0.844 27 H 0.075 0.925 28 H 0.205 0.795 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.026 0.974 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.284 -8.660 10.071 15.148 hybrid contribution 0.491 -0.153 -1.325 1.421 sum 7.775 -8.812 8.747 14.650 Atomic orbital electron populations 1.23108 0.75555 1.05111 1.02037 1.86205 1.24520 1.22931 1.86988 1.20413 0.90374 0.84682 0.88264 1.22032 0.91881 1.01521 1.11946 1.22236 0.99097 0.86748 0.86876 1.20900 0.84215 1.05026 1.05213 1.68590 1.06364 1.35697 1.19989 1.20879 0.84764 0.89722 0.87722 1.59340 1.51453 1.04862 1.06520 1.22036 0.98340 0.93770 0.90923 1.21591 0.99110 0.95426 0.98157 1.21584 1.00481 0.97964 0.94306 1.18665 0.93464 0.91248 0.93421 0.98165 1.21574 1.46412 0.97225 0.91708 0.92080 1.25854 0.94587 0.95684 1.02711 1.70070 1.47656 1.11168 1.26752 0.85522 0.77631 0.79223 0.79419 1.18553 1.20947 1.20540 1.21975 0.96931 0.96529 0.86547 1.67634 1.42581 0.98790 1.22348 0.93777 0.84404 0.92501 0.79460 0.87449 0.87090 0.90645 0.93861 0.91021 0.88503 0.92080 0.92203 0.93205 0.93198 0.97412 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 10.41 113.37 1.18 2.10 16 2 O -0.30 -8.84 10.49 -88.16 -0.92 -9.77 16 3 C 0.35 11.91 7.53 84.85 0.64 12.55 16 4 C -0.25 -6.93 9.79 22.55 0.22 -6.71 16 5 C 0.20 5.74 6.81 42.45 0.29 6.02 16 6 C -0.10 -1.77 10.21 71.23 0.73 -1.04 16 7 N -0.58 -22.44 9.64 -186.27 -1.80 -24.23 16 8 C 0.52 22.69 6.25 261.51 1.63 24.33 16 9 N -0.50 -22.72 4.71 -708.97 -3.34 -26.06 16 10 C 0.08 2.88 5.18 86.32 0.45 3.32 16 11 C -0.11 -3.69 6.09 30.65 0.19 -3.50 16 12 C -0.11 -4.43 5.23 30.68 0.16 -4.27 16 13 C 0.05 2.69 2.26 -11.49 -0.03 2.66 16 14 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 15 C -0.53 -29.89 8.56 25.60 0.22 -29.67 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 17 C 0.01 0.59 5.31 84.65 0.45 1.04 16 18 N -0.92 -55.29 11.34 21.45 0.24 -55.05 16 19 Si 0.96 44.49 29.54 68.60 2.03 46.51 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 C 0.11 5.58 4.36 86.33 0.38 5.95 16 24 N -0.58 -24.10 9.41 -310.87 -2.93 -27.02 16 25 H 0.04 1.31 8.12 -2.39 -0.02 1.29 16 26 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.06 1.49 8.12 -2.38 -0.02 1.47 16 28 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 29 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.11 1.35 8.09 -2.39 -0.02 1.33 16 31 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.04 1.64 7.91 -2.39 -0.02 1.63 16 33 H 0.07 2.46 8.10 -2.38 -0.02 2.44 16 34 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 39 H 0.01 0.41 8.10 -2.39 -0.02 0.39 16 40 H 0.06 3.69 6.07 -2.39 -0.01 3.68 16 Total: -1.00 -71.31 328.21 0.80 -70.51 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.02 Total: 12.31 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 6.50 Total: 12.79 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -7.82 Total: -132.36 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.92 Total: -9.77 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -71.31 0.80 -70.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.678 kcal (2) G-P(sol) polarization free energy of solvation -71.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds