Wall clock time and date at job start Mon Mar 30 2020 02:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32107 * 120.06530 * 2 1 4 4 C 1.32114 * 120.07296 * 179.97438 * 3 2 1 5 5 C 1.38778 * 120.18969 * 0.02562 * 4 3 2 6 6 N 1.31770 * 120.12481 * 359.97438 * 5 4 3 7 7 C 1.33030 * 119.92495 * 0.02562 * 6 5 4 8 8 C 1.48153 * 120.09172 * 180.02562 * 7 6 5 9 9 O 1.21522 * 119.99671 * 174.19496 * 8 7 6 10 10 N 1.34775 * 120.00213 * 354.18971 * 8 7 6 11 11 C 1.46495 * 120.00102 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47172 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47572 * 300.00400 * 12 11 10 14 14 C 1.53002 * 109.47082 * 60.00693 * 12 11 10 15 15 C 1.53001 * 109.47086 * 180.02562 * 12 11 10 16 16 C 1.50701 * 109.46973 * 180.02562 * 15 12 11 17 17 H 1.08001 * 120.00244 * 359.97438 * 16 15 12 18 18 C 1.37882 * 119.99854 * 180.02562 * 16 15 12 19 19 N 1.31512 * 119.99985 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99796 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47311 * 59.99723 * 20 18 16 22 22 H 1.48500 * 109.46969 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46966 * 299.99487 * 20 18 16 24 24 H 1.08998 * 109.47389 * 263.30842 * 1 2 3 25 25 H 1.08999 * 109.47049 * 23.30209 * 1 2 3 26 26 H 1.09000 * 109.47375 * 143.30235 * 1 2 3 27 27 H 1.07993 * 119.90348 * 180.02562 * 4 3 2 28 28 H 1.08002 * 119.93621 * 180.27180 * 5 4 3 29 29 H 0.96998 * 119.99613 * 0.02562 * 10 8 7 30 30 H 1.09001 * 109.47575 * 300.00752 * 11 10 8 31 31 H 1.09009 * 109.46670 * 60.00231 * 11 10 8 32 32 H 1.09007 * 109.46835 * 59.99513 * 13 12 11 33 33 H 1.08995 * 109.47484 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.46570 * 300.00162 * 13 12 11 35 35 H 1.09000 * 109.47199 * 59.99300 * 14 12 11 36 36 H 1.08995 * 109.47479 * 180.02562 * 14 12 11 37 37 H 1.09007 * 109.46649 * 300.00072 * 14 12 11 38 38 H 1.08996 * 109.47596 * 300.00121 * 15 12 11 39 39 H 1.09004 * 109.46806 * 60.00614 * 15 12 11 40 40 H 0.97005 * 119.99968 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1688 1.1433 0.0000 4 6 3.4899 1.1435 0.0005 5 6 4.1880 -0.0560 0.0005 6 7 3.5355 -1.2008 0.0005 7 6 2.2052 -1.2065 0.0000 8 6 1.4680 -2.4916 0.0006 9 8 0.2574 -2.4974 0.1066 10 7 2.1398 -3.6541 -0.1165 11 6 1.4108 -4.9247 -0.1154 12 6 2.4018 -6.0814 -0.2598 13 6 3.1689 -5.9347 -1.5754 14 6 3.3871 -6.0578 0.9105 15 6 1.6403 -7.4085 -0.2592 16 6 2.6166 -8.5478 -0.4008 17 1 3.6743 -8.3456 -0.4833 18 6 2.1593 -9.8483 -0.4259 19 7 0.8713 -10.0945 -0.3259 20 14 3.3694 -11.2606 -0.6007 21 1 4.3242 -11.2379 0.5364 22 1 2.6303 -12.5485 -0.6015 23 1 4.1157 -11.1179 -1.8767 24 1 -0.3634 -0.1197 1.0206 25 1 -0.3633 0.9438 -0.4065 26 1 -0.3634 -0.8240 -0.6141 27 1 4.0282 2.0797 0.0009 28 1 5.2680 -0.0510 0.0054 29 1 3.1061 -3.6493 -0.2008 30 1 0.8646 -5.0295 0.8220 31 1 0.7084 -4.9414 -0.9489 32 1 3.7113 -4.9892 -1.5762 33 1 3.8752 -6.7585 -1.6780 34 1 2.4669 -5.9515 -2.4090 35 1 2.8406 -6.1623 1.8478 36 1 4.0934 -6.8815 0.8075 37 1 3.9295 -5.1123 0.9097 38 1 1.0936 -7.5133 0.6778 39 1 0.9387 -7.4250 -1.0932 40 1 0.5496 -11.0095 -0.3433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597659640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:11 Heat of formation + Delta-G solvation = -3.997574 kcal Electronic energy + Delta-G solvation = -21286.651442 eV Core-core repulsion = 18101.152503 eV Total energy + Delta-G solvation = -3185.498938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.57174 -39.38022 -37.17845 -35.05291 -33.55674 -32.92728 -32.06505 -28.50680 -27.15663 -26.60349 -26.50353 -25.18573 -23.20543 -22.80403 -20.77032 -18.83001 -18.13418 -17.37328 -16.39997 -16.25091 -15.88919 -15.62797 -14.83537 -14.66712 -14.49503 -13.77142 -13.55092 -13.13754 -13.02019 -12.94822 -12.79149 -12.51630 -12.16434 -12.05881 -11.92138 -11.37368 -11.14440 -10.99793 -10.87172 -10.62777 -10.41901 -10.27126 -10.10670 -9.88145 -9.54722 -9.40265 -9.13643 -8.93889 -8.76034 -8.35875 -6.00154 -4.01425 0.15065 0.73824 2.66931 3.11045 3.32160 3.37524 3.38976 3.53092 3.78533 3.81193 4.12164 4.45000 4.55318 4.76766 4.98640 5.05715 5.35345 5.47617 5.56652 5.60345 5.66896 5.74996 5.82880 6.16286 6.18061 6.23110 6.26252 6.38367 6.53342 6.63682 6.72935 6.84238 7.05575 7.07088 7.11372 7.33148 7.62834 7.67907 7.75443 7.98347 8.23576 8.40594 9.03034 9.61658 11.11286 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037601 B = 0.003476 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.482950 B = 8053.781420 C = 8593.468512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.139 3.861 3 N -0.446 5.446 4 C 0.075 3.925 5 C 0.038 3.962 6 N -0.408 5.408 7 C 0.029 3.971 8 C 0.565 3.435 9 O -0.528 6.528 10 N -0.696 5.696 11 C 0.125 3.875 12 C -0.073 4.073 13 C -0.128 4.128 14 C -0.128 4.128 15 C 0.037 3.963 16 C -0.512 4.512 17 H 0.059 0.941 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.175 0.825 28 H 0.176 0.824 29 H 0.409 0.591 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.030 0.970 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.775 20.757 0.354 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.001 4.001 3 N -0.161 5.161 4 C -0.087 4.087 5 C -0.124 4.124 6 N -0.125 5.125 7 C -0.112 4.112 8 C 0.349 3.651 9 O -0.405 6.405 10 N -0.347 5.347 11 C 0.003 3.997 12 C -0.073 4.073 13 C -0.186 4.186 14 C -0.186 4.186 15 C 0.000 4.000 16 C -0.550 4.550 17 H 0.077 0.923 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 H 0.106 0.894 25 H 0.090 0.910 26 H 0.128 0.872 27 H 0.192 0.808 28 H 0.194 0.806 29 H 0.246 0.754 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.731 20.519 0.432 21.062 hybrid contribution 1.356 -0.761 -0.093 1.558 sum 6.088 19.759 0.339 20.678 Atomic orbital electron populations 1.21083 0.86287 1.04317 1.04791 1.22421 0.99149 0.87663 0.90843 1.68485 1.08880 1.28633 1.10104 1.24084 0.90874 1.00125 0.93589 1.23822 1.02137 0.88386 0.98073 1.68347 1.07661 1.30371 1.06139 1.22148 0.90750 0.95802 1.02523 1.17617 0.86630 0.82829 0.78063 1.90748 1.12830 1.86525 1.50418 1.46102 1.11858 1.05658 1.71087 1.21762 0.94970 0.80872 1.02128 1.20916 0.95300 0.95899 0.95186 1.21774 1.00140 0.99829 0.96810 1.21773 0.99164 0.99955 0.97671 1.19085 0.95013 0.88441 0.97511 1.21149 0.93369 0.90681 1.49831 0.92286 1.25008 0.94983 0.98919 0.95541 1.69953 1.12787 1.20104 1.50576 0.86708 0.81216 0.81760 0.78599 1.20316 1.21403 1.20325 0.89378 0.91026 0.87238 0.80820 0.80650 0.75425 0.91355 0.91348 0.95146 0.91348 0.93347 0.93352 0.91365 0.95070 0.96296 0.96299 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 8.88 36.00 0.32 -0.90 16 2 C 0.14 1.72 6.82 -82.04 -0.56 1.16 16 3 N -0.45 -4.95 10.42 -8.95 -0.09 -5.05 16 4 C 0.07 0.60 11.23 -17.23 -0.19 0.41 16 5 C 0.04 0.32 11.22 -17.38 -0.20 0.13 16 6 N -0.41 -4.85 9.73 -9.61 -0.09 -4.94 16 7 C 0.03 0.39 6.75 -82.84 -0.56 -0.17 16 8 C 0.57 8.72 7.75 -12.19 -0.09 8.62 16 9 O -0.53 -9.07 13.33 5.35 0.07 -9.00 16 10 N -0.70 -10.66 4.95 -61.15 -0.30 -10.96 16 11 C 0.13 2.19 4.56 -4.05 -0.02 2.17 16 12 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 13 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 14 C -0.13 -2.28 8.05 37.16 0.30 -1.99 16 15 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 16 C -0.51 -13.53 7.65 -34.44 -0.26 -13.79 16 17 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 20 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.11 1.39 5.84 -51.93 -0.30 1.09 16 27 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 28 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 29 H 0.41 5.82 5.53 -40.82 -0.23 5.59 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 32 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 33 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 37 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 327.14 15.07 4.93 4.93 Total: -1.00 -30.89 327.14 -6.62 -37.51 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.59 Total: 2.49 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.26 Total: -5.54 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.25 Total: -46.51 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.07 Total: -9.00 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.89 -6.62 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597659640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.516 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds