Wall clock time and date at job start Mon Mar 30 2020 02:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32107 * 120.06530 * 2 1 4 4 C 1.32114 * 120.07296 * 179.97438 * 3 2 1 5 5 C 1.38778 * 120.18969 * 0.02562 * 4 3 2 6 6 N 1.31770 * 120.12481 * 359.97438 * 5 4 3 7 7 C 1.33030 * 119.92495 * 0.02562 * 6 5 4 8 8 C 1.48153 * 120.09172 * 180.02562 * 7 6 5 9 9 O 1.21522 * 119.99671 * 174.19496 * 8 7 6 10 10 N 1.34775 * 120.00213 * 354.18971 * 8 7 6 11 11 C 1.46495 * 120.00102 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47172 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47572 * 300.00400 * 12 11 10 14 14 C 1.53002 * 109.47082 * 60.00693 * 12 11 10 15 15 C 1.53001 * 109.47086 * 180.02562 * 12 11 10 16 16 C 1.50701 * 109.46973 * 180.02562 * 15 12 11 17 17 H 1.08001 * 120.00244 * 359.97438 * 16 15 12 18 18 C 1.37882 * 119.99854 * 180.02562 * 16 15 12 19 19 N 1.31512 * 119.99985 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99796 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47311 * 59.99723 * 20 18 16 22 22 H 1.48500 * 109.46969 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46966 * 299.99487 * 20 18 16 24 24 H 1.08998 * 109.47389 * 263.30842 * 1 2 3 25 25 H 1.08999 * 109.47049 * 23.30209 * 1 2 3 26 26 H 1.09000 * 109.47375 * 143.30235 * 1 2 3 27 27 H 1.07993 * 119.90348 * 180.02562 * 4 3 2 28 28 H 1.08002 * 119.93621 * 180.27180 * 5 4 3 29 29 H 0.96998 * 119.99613 * 0.02562 * 10 8 7 30 30 H 1.09001 * 109.47575 * 300.00752 * 11 10 8 31 31 H 1.09009 * 109.46670 * 60.00231 * 11 10 8 32 32 H 1.09007 * 109.46835 * 59.99513 * 13 12 11 33 33 H 1.08995 * 109.47484 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.46570 * 300.00162 * 13 12 11 35 35 H 1.09000 * 109.47199 * 59.99300 * 14 12 11 36 36 H 1.08995 * 109.47479 * 180.02562 * 14 12 11 37 37 H 1.09007 * 109.46649 * 300.00072 * 14 12 11 38 38 H 1.08996 * 109.47596 * 300.00121 * 15 12 11 39 39 H 1.09004 * 109.46806 * 60.00614 * 15 12 11 40 40 H 0.97005 * 119.99968 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1688 1.1433 0.0000 4 6 3.4899 1.1435 0.0005 5 6 4.1880 -0.0560 0.0005 6 7 3.5355 -1.2008 0.0005 7 6 2.2052 -1.2065 0.0000 8 6 1.4680 -2.4916 0.0006 9 8 0.2574 -2.4974 0.1066 10 7 2.1398 -3.6541 -0.1165 11 6 1.4108 -4.9247 -0.1154 12 6 2.4018 -6.0814 -0.2598 13 6 3.1689 -5.9347 -1.5754 14 6 3.3871 -6.0578 0.9105 15 6 1.6403 -7.4085 -0.2592 16 6 2.6166 -8.5478 -0.4008 17 1 3.6743 -8.3456 -0.4833 18 6 2.1593 -9.8483 -0.4259 19 7 0.8713 -10.0945 -0.3259 20 14 3.3694 -11.2606 -0.6007 21 1 4.3242 -11.2379 0.5364 22 1 2.6303 -12.5485 -0.6015 23 1 4.1157 -11.1179 -1.8767 24 1 -0.3634 -0.1197 1.0206 25 1 -0.3633 0.9438 -0.4065 26 1 -0.3634 -0.8240 -0.6141 27 1 4.0282 2.0797 0.0009 28 1 5.2680 -0.0510 0.0054 29 1 3.1061 -3.6493 -0.2008 30 1 0.8646 -5.0295 0.8220 31 1 0.7084 -4.9414 -0.9489 32 1 3.7113 -4.9892 -1.5762 33 1 3.8752 -6.7585 -1.6780 34 1 2.4669 -5.9515 -2.4090 35 1 2.8406 -6.1623 1.8478 36 1 4.0934 -6.8815 0.8075 37 1 3.9295 -5.1123 0.9097 38 1 1.0936 -7.5133 0.6778 39 1 0.9387 -7.4250 -1.0932 40 1 0.5496 -11.0095 -0.3433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597659640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:11 Heat of formation + Delta-G solvation = -25.046664 kcal Electronic energy + Delta-G solvation = -21287.564199 eV Core-core repulsion = 18101.152503 eV Total energy + Delta-G solvation = -3186.411695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.42186 -40.59015 -38.68918 -35.96763 -35.10640 -33.92791 -33.70854 -29.55647 -28.93637 -27.98020 -27.84383 -26.31003 -24.77659 -23.86356 -21.99170 -20.19430 -19.13550 -18.55789 -18.30930 -17.07106 -16.96508 -16.83731 -16.39740 -15.88136 -15.85418 -14.97239 -14.96854 -14.66906 -14.34844 -13.94041 -13.90261 -13.77489 -13.75410 -13.40216 -12.84627 -12.76447 -12.73207 -12.60605 -12.33172 -12.22707 -12.18960 -12.01226 -11.54704 -11.24484 -10.98198 -10.87915 -10.49471 -10.41874 -10.16015 -10.00664 -8.12941 -6.20598 -0.67566 -0.02719 1.43457 1.45400 1.52586 1.62812 1.96812 2.45553 2.66912 2.94824 3.05853 3.21520 3.33779 3.70988 3.93626 4.03421 4.06740 4.21161 4.28008 4.41343 4.67261 4.69133 4.70766 4.75234 4.80358 4.94837 5.02963 5.11255 5.11296 5.31325 5.42179 5.46243 5.49299 5.51621 5.56979 5.79519 5.90408 6.05869 6.30652 6.40007 6.66008 6.94018 7.05546 7.46983 8.99343 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037601 B = 0.003476 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.482950 B = 8053.781420 C = 8593.468512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.127 3.873 3 N -0.463 5.463 4 C 0.093 3.907 5 C 0.048 3.952 6 N -0.425 5.425 7 C 0.002 3.998 8 C 0.564 3.436 9 O -0.554 6.554 10 N -0.691 5.691 11 C 0.139 3.861 12 C -0.065 4.065 13 C -0.122 4.122 14 C -0.122 4.122 15 C 0.042 3.958 16 C -0.516 4.516 17 H 0.072 0.928 18 C -0.004 4.004 19 N -0.938 5.938 20 Si 0.957 3.043 21 H -0.267 1.267 22 H -0.291 1.291 23 H -0.267 1.267 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.222 0.778 28 H 0.221 0.779 29 H 0.416 0.584 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.057 0.943 37 H 0.064 0.936 38 H -0.012 1.012 39 H -0.011 1.011 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.115 22.959 0.229 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.011 4.011 3 N -0.178 5.178 4 C -0.070 4.070 5 C -0.116 4.116 6 N -0.142 5.142 7 C -0.136 4.136 8 C 0.349 3.651 9 O -0.433 6.433 10 N -0.342 5.342 11 C 0.015 3.985 12 C -0.065 4.065 13 C -0.179 4.179 14 C -0.179 4.179 15 C 0.004 3.996 16 C -0.554 4.554 17 H 0.090 0.910 18 C -0.201 4.201 19 N -0.579 5.579 20 Si 0.783 3.217 21 H -0.192 1.192 22 H -0.217 1.217 23 H -0.192 1.192 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.239 0.761 28 H 0.237 0.763 29 H 0.254 0.746 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.063 22.720 0.304 24.111 hybrid contribution 0.398 -1.267 -0.048 1.329 sum 8.462 21.453 0.256 23.063 Atomic orbital electron populations 1.20972 0.86553 1.04226 1.04270 1.22408 0.99356 0.87962 0.91380 1.68554 1.10591 1.27756 1.10900 1.24940 0.89849 1.02078 0.90124 1.24629 1.04006 0.87341 0.95610 1.68308 1.06808 1.32325 1.06792 1.21685 0.91636 0.94519 1.05778 1.18004 0.86502 0.83568 0.77029 1.90735 1.14144 1.87095 1.51371 1.45875 1.11948 1.04791 1.71599 1.21368 0.94445 0.81767 1.00919 1.20718 0.95403 0.93488 0.96930 1.21694 0.99665 1.01149 0.95399 1.21693 0.98519 1.01293 0.96402 1.18951 0.94570 0.91471 0.94586 1.21566 0.94213 0.91212 1.48368 0.91027 1.25927 0.96636 1.02001 0.95498 1.70110 1.14955 1.20537 1.52297 0.85612 0.78910 0.78036 0.79160 1.19178 1.21688 1.19179 0.89722 0.89596 0.89150 0.76145 0.76304 0.74553 0.92741 0.92644 0.91817 0.92391 0.94189 0.94241 0.92398 0.91763 0.99334 0.99303 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.37 8.88 71.23 0.63 -1.74 16 2 C 0.13 3.03 6.82 42.80 0.29 3.32 16 3 N -0.46 -9.07 10.42 -182.23 -1.90 -10.97 16 4 C 0.09 1.08 11.23 84.78 0.95 2.03 16 5 C 0.05 0.59 11.22 84.83 0.95 1.55 16 6 N -0.43 -8.94 9.73 -184.32 -1.79 -10.73 16 7 C 0.00 0.06 6.75 41.88 0.28 0.35 16 8 C 0.56 17.54 7.75 86.88 0.67 18.21 16 9 O -0.55 -19.86 13.33 -3.79 -0.05 -19.91 16 10 N -0.69 -20.89 4.95 -465.68 -2.30 -23.19 16 11 C 0.14 5.00 4.56 86.38 0.39 5.39 16 12 C -0.06 -2.49 0.54 -52.18 -0.03 -2.52 16 13 C -0.12 -4.22 8.05 71.98 0.58 -3.64 16 14 C -0.12 -4.23 8.05 71.98 0.58 -3.65 16 15 C 0.04 2.12 4.04 29.85 0.12 2.24 16 16 C -0.52 -27.63 7.65 25.60 0.20 -27.43 16 17 H 0.07 3.59 5.68 -2.91 -0.02 3.58 16 18 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 19 N -0.94 -56.92 13.29 21.45 0.28 -56.63 16 20 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.09 2.43 5.84 -2.39 -0.01 2.42 16 27 H 0.22 0.36 8.06 -2.91 -0.02 0.34 16 28 H 0.22 0.65 8.06 -2.91 -0.02 0.63 16 29 H 0.42 11.11 5.53 -92.71 -0.51 10.60 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.06 1.77 6.86 -2.38 -0.02 1.75 16 33 H 0.06 2.13 6.62 -2.39 -0.02 2.11 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 2.13 6.62 -2.39 -0.02 2.11 16 37 H 0.06 1.79 6.86 -2.38 -0.02 1.78 16 38 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -69.98 327.14 2.89 -67.09 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.54 Total: 14.43 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 6.09 Total: -5.63 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -5.71 Total: -101.53 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.91 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -69.98 2.89 -67.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597659640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.044 kcal (2) G-P(sol) polarization free energy of solvation -69.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds