Wall clock time and date at job start Mon Mar 30 2020 02:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39871 * 125.90094 * 2 1 4 4 C 1.35322 * 107.92037 * 179.97438 * 3 2 1 5 5 N 1.34941 * 107.74701 * 0.02562 * 4 3 2 6 6 C 1.46497 * 126.03719 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47218 * 125.00448 * 6 5 4 8 8 O 1.21284 * 119.99639 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00202 * 180.02562 * 7 6 5 10 10 C 1.46931 * 120.63145 * 359.97034 * 9 7 6 11 11 C 1.53191 * 108.76527 * 126.40558 * 10 9 7 12 12 C 1.53046 * 109.30997 * 54.65907 * 11 10 9 13 13 C 1.53039 * 109.52798 * 298.61471 * 12 11 10 14 14 H 1.09000 * 109.49863 * 301.42271 * 13 12 11 15 15 C 1.50697 * 109.50029 * 181.32171 * 13 12 11 16 16 H 1.08004 * 120.00020 * 0.02562 * 15 13 12 17 17 C 1.37872 * 119.99914 * 179.97438 * 15 13 12 18 18 N 1.31513 * 120.00308 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 119.99856 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47151 * 90.00431 * 19 17 15 21 21 H 1.48498 * 109.47268 * 210.00459 * 19 17 15 22 22 H 1.48498 * 109.46988 * 330.00575 * 19 17 15 23 23 C 1.46919 * 120.63242 * 179.97438 * 9 7 6 24 24 N 1.30848 * 125.89897 * 180.31079 * 2 1 3 25 25 H 1.08996 * 109.47182 * 89.99597 * 1 2 3 26 26 H 1.09005 * 109.46640 * 209.99804 * 1 2 3 27 27 H 1.08997 * 109.46803 * 329.99218 * 1 2 3 28 28 H 1.07996 * 126.03861 * 0.02562 * 3 2 1 29 29 H 1.08002 * 126.12442 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47375 * 5.00248 * 6 5 4 31 31 H 1.09004 * 109.47181 * 245.00376 * 6 5 4 32 32 H 1.08998 * 109.58959 * 246.20295 * 10 9 7 33 33 H 1.09003 * 109.58181 * 6.48778 * 10 9 7 34 34 H 1.08998 * 109.50939 * 294.70294 * 11 10 9 35 35 H 1.09003 * 109.48831 * 174.59930 * 11 10 9 36 36 H 1.09002 * 109.46115 * 178.59924 * 12 11 10 37 37 H 1.09004 * 109.45806 * 58.62809 * 12 11 10 38 38 H 0.96998 * 119.99864 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.59005 * 113.79701 * 23 9 7 40 40 H 1.09000 * 109.58835 * 353.37037 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7153 0.0006 5 7 3.6088 -0.6341 0.0004 6 6 4.7899 -1.5008 0.0003 7 6 4.7127 -2.4553 1.1639 8 8 3.7646 -2.4152 1.9192 9 7 5.6976 -3.3528 1.3659 10 6 6.8527 -3.4132 0.4598 11 6 8.1360 -3.3075 1.2896 12 6 8.1293 -4.3895 2.3721 13 6 6.9336 -4.1746 3.3027 14 1 6.9957 -3.1834 3.7520 15 6 6.9459 -5.2208 4.3873 16 1 7.7285 -5.9647 4.4111 17 6 5.9587 -5.2277 5.3497 18 7 5.0060 -4.3216 5.3210 19 14 5.9736 -6.5250 6.6937 20 1 6.7553 -6.0269 7.8539 21 1 4.5805 -6.8107 7.1214 22 1 6.5967 -7.7688 6.1742 23 6 5.6367 -4.2894 2.4962 24 7 2.2742 -1.0599 -0.0057 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9923 2.1598 0.0004 29 1 4.4892 1.3485 0.0003 30 1 5.6885 -0.8905 0.0900 31 1 4.8260 -2.0657 -0.9313 32 1 6.8439 -4.3596 -0.0809 33 1 6.8044 -2.5867 -0.2492 34 1 8.1867 -2.3246 1.7580 35 1 9.0010 -3.4471 0.6411 36 1 9.0528 -4.3324 2.9483 37 1 8.0534 -5.3709 1.9040 38 1 4.3112 -4.3267 5.9979 39 1 5.5285 -5.3074 2.1218 40 1 4.7876 -4.0397 3.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597899500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:21 Heat of formation + Delta-G solvation = 40.374626 kcal Electronic energy + Delta-G solvation = -21752.426625 eV Core-core repulsion = 18568.851809 eV Total energy + Delta-G solvation = -3183.574815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04895 -39.35158 -36.74793 -33.82261 -33.32117 -31.84046 -30.44466 -29.80011 -29.20760 -26.35693 -25.06275 -24.02566 -21.89507 -21.07254 -20.15433 -19.49519 -18.30002 -17.04622 -16.81952 -16.06955 -15.29530 -14.96847 -14.50269 -14.39714 -13.94197 -13.77787 -13.48451 -13.39804 -12.92599 -12.78654 -12.66912 -12.44594 -12.31507 -11.95586 -11.93465 -11.73695 -11.03507 -10.96142 -10.53732 -10.46189 -10.31062 -10.27244 -9.94272 -9.48045 -9.16301 -9.08505 -8.84398 -8.45799 -8.34681 -7.80734 -6.01621 -4.11046 2.05556 2.57092 2.98228 3.11329 3.29643 3.37429 3.39488 3.61835 4.41185 4.58555 4.80223 4.85970 5.00644 5.10776 5.18446 5.28521 5.36683 5.40918 5.57043 5.68050 5.74183 5.89174 5.93599 5.96015 6.07808 6.22456 6.24161 6.53380 6.61056 6.78470 6.85415 6.92102 7.04568 7.15473 7.23330 7.60526 7.83089 7.95507 7.95859 8.17272 8.35647 8.78220 8.93418 9.55126 11.03619 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020587 B = 0.004718 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.765782 B = 5933.354648 C = 6990.011398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.058 3.942 3 C -0.273 4.273 4 C 0.051 3.949 5 N -0.357 5.357 6 C 0.115 3.885 7 C 0.491 3.509 8 O -0.506 6.506 9 N -0.606 5.606 10 C 0.107 3.893 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.040 3.960 14 H 0.028 0.972 15 C -0.523 4.523 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.880 5.880 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.114 3.886 24 N -0.261 5.261 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.144 0.856 29 H 0.171 0.829 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.264 0.736 39 H 0.043 0.957 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 9.004 -13.874 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.110 4.110 3 C -0.302 4.302 4 C -0.094 4.094 5 N -0.139 5.139 6 C -0.011 4.011 7 C 0.275 3.725 8 O -0.380 6.380 9 N -0.341 5.341 10 C -0.017 4.017 11 C -0.172 4.172 12 C -0.149 4.149 13 C 0.021 3.979 14 H 0.046 0.954 15 C -0.562 4.562 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.006 4.006 24 N -0.083 5.083 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.162 0.838 29 H 0.188 0.812 30 H 0.136 0.864 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.183 7.709 -13.356 15.422 hybrid contribution 0.308 0.239 0.765 0.859 sum 0.125 7.948 -12.591 14.890 Atomic orbital electron populations 1.20113 0.87006 1.03212 1.02392 1.22366 0.96957 0.90919 1.00721 1.21297 0.91634 0.99532 1.17755 1.22483 0.99728 0.84646 1.02535 1.48047 1.05042 1.04167 1.56640 1.21618 0.85348 0.93889 1.00248 1.20285 0.83729 0.82150 0.86331 1.90803 1.31896 1.69493 1.45772 1.48512 1.19843 1.35731 1.29974 1.21677 0.86776 1.01203 0.92014 1.21951 0.95812 1.00969 0.98474 1.21628 1.00530 0.96501 0.96195 1.18961 0.88913 0.97902 0.92095 0.95403 1.21065 1.10901 1.14201 1.09988 0.92324 1.25060 0.95454 0.95743 0.97750 1.69883 1.13316 1.33799 1.34720 0.86587 0.77295 0.81947 0.82153 1.20656 1.21157 1.19866 1.22301 1.04739 0.88722 0.84812 1.77475 0.86001 1.22343 1.22500 0.90989 0.90951 0.90740 0.83801 0.81176 0.86365 0.87506 0.91671 0.91543 0.92132 0.92064 0.92934 0.93099 0.92595 0.93890 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.45 36.00 0.38 -0.42 16 2 C 0.06 0.90 7.22 -82.40 -0.59 0.30 16 3 C -0.27 -3.67 10.74 -40.01 -0.43 -4.10 16 4 C 0.05 0.68 11.45 -17.22 -0.20 0.49 16 5 N -0.36 -5.79 3.39 -62.55 -0.21 -6.01 16 6 C 0.11 1.62 5.34 -5.19 -0.03 1.59 16 7 C 0.49 9.82 7.73 -10.99 -0.08 9.73 16 8 O -0.51 -12.93 15.13 5.55 0.08 -12.85 16 9 N -0.61 -11.77 2.97 -172.79 -0.51 -12.29 16 10 C 0.11 1.52 6.34 -3.71 -0.02 1.49 16 11 C -0.13 -1.99 6.08 -26.61 -0.16 -2.15 16 12 C -0.11 -2.12 5.11 -26.69 -0.14 -2.26 16 13 C 0.04 0.98 2.25 -91.67 -0.21 0.78 16 14 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 15 C -0.52 -14.12 8.56 -34.44 -0.29 -14.42 16 16 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -25.98 11.40 55.43 0.63 -25.35 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.11 2.76 5.40 -3.73 -0.02 2.74 16 24 N -0.26 -4.87 11.66 33.67 0.39 -4.48 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 30 H 0.12 1.22 7.62 -51.93 -0.40 0.82 16 31 H 0.11 1.24 7.94 -51.93 -0.41 0.83 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.68 5.93 -51.93 -0.31 0.37 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.12 3.51 5.13 -51.93 -0.27 3.25 16 LS Contribution 327.59 15.07 4.94 4.94 Total: -1.00 -35.28 327.59 -7.59 -42.87 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.00 Total: 1.38 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.90 Total: -4.57 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.30 Total: -48.12 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.08 Total: -12.85 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.28 -7.59 -42.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.246 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds