Wall clock time and date at job start Mon Mar 30 2020 02:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39871 * 125.90094 * 2 1 4 4 C 1.35322 * 107.92037 * 179.97438 * 3 2 1 5 5 N 1.34941 * 107.74701 * 0.02562 * 4 3 2 6 6 C 1.46497 * 126.03719 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47218 * 125.00448 * 6 5 4 8 8 O 1.21284 * 119.99639 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00202 * 180.02562 * 7 6 5 10 10 C 1.46931 * 120.63145 * 359.97034 * 9 7 6 11 11 C 1.53191 * 108.76527 * 126.40558 * 10 9 7 12 12 C 1.53046 * 109.30997 * 54.65907 * 11 10 9 13 13 C 1.53039 * 109.52798 * 298.61471 * 12 11 10 14 14 H 1.09000 * 109.49863 * 301.42271 * 13 12 11 15 15 C 1.50697 * 109.50029 * 181.32171 * 13 12 11 16 16 H 1.08004 * 120.00020 * 0.02562 * 15 13 12 17 17 C 1.37872 * 119.99914 * 179.97438 * 15 13 12 18 18 N 1.31513 * 120.00308 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 119.99856 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47151 * 90.00431 * 19 17 15 21 21 H 1.48498 * 109.47268 * 210.00459 * 19 17 15 22 22 H 1.48498 * 109.46988 * 330.00575 * 19 17 15 23 23 C 1.46919 * 120.63242 * 179.97438 * 9 7 6 24 24 N 1.30848 * 125.89897 * 180.31079 * 2 1 3 25 25 H 1.08996 * 109.47182 * 89.99597 * 1 2 3 26 26 H 1.09005 * 109.46640 * 209.99804 * 1 2 3 27 27 H 1.08997 * 109.46803 * 329.99218 * 1 2 3 28 28 H 1.07996 * 126.03861 * 0.02562 * 3 2 1 29 29 H 1.08002 * 126.12442 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47375 * 5.00248 * 6 5 4 31 31 H 1.09004 * 109.47181 * 245.00376 * 6 5 4 32 32 H 1.08998 * 109.58959 * 246.20295 * 10 9 7 33 33 H 1.09003 * 109.58181 * 6.48778 * 10 9 7 34 34 H 1.08998 * 109.50939 * 294.70294 * 11 10 9 35 35 H 1.09003 * 109.48831 * 174.59930 * 11 10 9 36 36 H 1.09002 * 109.46115 * 178.59924 * 12 11 10 37 37 H 1.09004 * 109.45806 * 58.62809 * 12 11 10 38 38 H 0.96998 * 119.99864 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.59005 * 113.79701 * 23 9 7 40 40 H 1.09000 * 109.58835 * 353.37037 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7153 0.0006 5 7 3.6088 -0.6341 0.0004 6 6 4.7899 -1.5008 0.0003 7 6 4.7127 -2.4553 1.1639 8 8 3.7646 -2.4152 1.9192 9 7 5.6976 -3.3528 1.3659 10 6 6.8527 -3.4132 0.4598 11 6 8.1360 -3.3075 1.2896 12 6 8.1293 -4.3895 2.3721 13 6 6.9336 -4.1746 3.3027 14 1 6.9957 -3.1834 3.7520 15 6 6.9459 -5.2208 4.3873 16 1 7.7285 -5.9647 4.4111 17 6 5.9587 -5.2277 5.3497 18 7 5.0060 -4.3216 5.3210 19 14 5.9736 -6.5250 6.6937 20 1 6.7553 -6.0269 7.8539 21 1 4.5805 -6.8107 7.1214 22 1 6.5967 -7.7688 6.1742 23 6 5.6367 -4.2894 2.4962 24 7 2.2742 -1.0599 -0.0057 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9923 2.1598 0.0004 29 1 4.4892 1.3485 0.0003 30 1 5.6885 -0.8905 0.0900 31 1 4.8260 -2.0657 -0.9313 32 1 6.8439 -4.3596 -0.0809 33 1 6.8044 -2.5867 -0.2492 34 1 8.1867 -2.3246 1.7580 35 1 9.0010 -3.4471 0.6411 36 1 9.0528 -4.3324 2.9483 37 1 8.0534 -5.3709 1.9040 38 1 4.3112 -4.3267 5.9979 39 1 5.5285 -5.3074 2.1218 40 1 4.7876 -4.0397 3.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597899500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:21 Heat of formation + Delta-G solvation = 15.972556 kcal Electronic energy + Delta-G solvation = -21753.484778 eV Core-core repulsion = 18568.851809 eV Total energy + Delta-G solvation = -3184.632969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.14588 -40.85364 -38.35671 -35.42055 -34.76917 -33.48138 -31.78952 -31.16822 -30.34393 -27.73128 -26.82011 -25.50265 -23.45017 -22.16580 -21.58091 -20.75449 -19.74913 -18.64706 -18.17637 -17.75916 -16.69937 -16.58625 -16.21637 -15.68643 -15.18776 -15.03297 -14.83301 -14.57731 -14.48501 -14.24808 -13.95715 -13.75138 -13.57117 -13.42270 -12.95937 -12.90821 -12.88681 -12.71565 -12.30422 -12.25213 -11.82284 -11.64689 -11.40738 -11.17517 -10.96848 -10.77574 -10.55329 -10.08589 -9.44813 -9.42287 -8.14843 -6.32306 0.98356 1.36772 1.38263 1.48892 1.55566 1.65009 1.94470 2.19869 2.39214 3.13700 3.44527 3.70095 3.97332 4.02857 4.10703 4.12522 4.19511 4.33883 4.45270 4.59859 4.73172 4.79743 4.82218 4.82683 4.86474 4.95393 5.04273 5.10714 5.25073 5.25907 5.28391 5.34678 5.51501 5.61314 5.81464 5.87543 5.97344 6.15530 6.30369 6.62552 6.81796 6.87458 7.28918 7.38920 8.88119 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020587 B = 0.004718 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.765782 B = 5933.354648 C = 6990.011398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.042 3.958 3 C -0.284 4.284 4 C 0.056 3.944 5 N -0.374 5.374 6 C 0.124 3.876 7 C 0.479 3.521 8 O -0.577 6.577 9 N -0.608 5.608 10 C 0.099 3.901 11 C -0.126 4.126 12 C -0.107 4.107 13 C 0.040 3.960 14 H -0.014 1.014 15 C -0.537 4.537 16 H 0.063 0.937 17 C 0.008 3.992 18 N -0.917 5.917 19 Si 0.957 3.043 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.260 1.260 23 C 0.127 3.873 24 N -0.328 5.328 25 H 0.092 0.908 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.173 0.827 29 H 0.217 0.783 30 H 0.168 0.832 31 H 0.139 0.861 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.258 0.742 39 H 0.032 0.968 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 10.182 -16.318 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C -0.313 4.313 4 C -0.089 4.089 5 N -0.156 5.156 6 C -0.001 4.001 7 C 0.267 3.733 8 O -0.456 6.456 9 N -0.341 5.341 10 C -0.022 4.022 11 C -0.164 4.164 12 C -0.145 4.145 13 C 0.020 3.980 14 H 0.004 0.996 15 C -0.575 4.575 16 H 0.081 0.919 17 C -0.191 4.191 18 N -0.556 5.556 19 Si 0.782 3.218 20 H -0.199 1.199 21 H -0.216 1.216 22 H -0.184 1.184 23 C 0.004 3.996 24 N -0.151 5.151 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.191 0.809 29 H 0.234 0.766 30 H 0.185 0.815 31 H 0.156 0.844 32 H 0.099 0.901 33 H 0.138 0.862 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.069 8.885 -15.847 18.285 hybrid contribution -0.361 -0.104 1.523 1.569 sum 1.708 8.781 -14.324 16.887 Atomic orbital electron populations 1.20236 0.85234 1.03406 1.03766 1.23056 0.98496 0.91301 0.99596 1.21754 0.91658 1.00337 1.17588 1.23298 1.01361 0.83886 1.00329 1.48246 1.04627 1.05427 1.57345 1.21818 0.86650 0.93531 0.98056 1.21442 0.82390 0.82370 0.87141 1.90771 1.34647 1.71476 1.48713 1.48529 1.21682 1.34599 1.29309 1.22136 0.83979 1.04429 0.91665 1.21922 0.98022 0.98764 0.97681 1.21526 0.97593 0.98681 0.96654 1.18889 0.91571 0.94780 0.92732 0.99553 1.21567 1.10528 1.14626 1.10779 0.91886 1.25918 0.95143 0.97729 1.00303 1.70103 1.14115 1.35979 1.35425 0.85570 0.77026 0.79795 0.79407 1.19884 1.21625 1.18402 1.21634 1.02593 0.89217 0.86124 1.77394 0.87841 1.24614 1.25283 0.88958 0.92715 0.88501 0.80940 0.76641 0.81480 0.84358 0.90100 0.86170 0.92552 0.87367 0.92980 0.92621 0.93321 0.94930 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.45 71.23 0.74 -0.82 16 2 C 0.04 1.30 7.22 43.10 0.31 1.62 16 3 C -0.28 -7.08 10.74 21.99 0.24 -6.84 16 4 C 0.06 1.32 11.45 83.54 0.96 2.27 16 5 N -0.37 -11.53 3.39 -351.79 -1.19 -12.72 16 6 C 0.12 3.13 5.34 85.64 0.46 3.59 16 7 C 0.48 19.20 7.73 87.66 0.68 19.88 16 8 O -0.58 -31.23 15.13 -3.04 -0.05 -31.27 16 9 N -0.61 -23.37 2.97 -818.99 -2.43 -25.81 16 10 C 0.10 2.41 6.34 86.36 0.55 2.96 16 11 C -0.13 -3.26 6.08 30.67 0.19 -3.07 16 12 C -0.11 -3.95 5.11 30.62 0.16 -3.79 16 13 C 0.04 1.98 2.25 -11.48 -0.03 1.96 16 14 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 15 C -0.54 -29.83 8.56 25.60 0.22 -29.61 16 16 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 17 C 0.01 0.47 5.30 84.65 0.45 0.92 16 18 N -0.92 -57.47 11.40 21.45 0.24 -57.22 16 19 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 23 C 0.13 6.41 5.40 86.35 0.47 6.87 16 24 N -0.33 -12.43 11.66 -47.38 -0.55 -12.99 16 25 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.22 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.17 2.50 7.62 -2.39 -0.02 2.48 16 31 H 0.14 2.61 7.94 -2.38 -0.02 2.60 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.12 1.69 5.93 -2.39 -0.01 1.68 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 39 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 4.32 5.13 -2.39 -0.01 4.30 16 Total: -1.00 -87.38 327.59 4.45 -82.93 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.02 Total: 14.02 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 5.38 Total: -4.07 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -3.94 Total: -108.73 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.05 Total: -31.27 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -87.38 4.45 -82.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.903 kcal (2) G-P(sol) polarization free energy of solvation -87.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds