Wall clock time and date at job start Mon Mar 30 2020 02:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39872 * 125.89422 * 2 1 4 4 C 1.35322 * 107.91948 * 179.97438 * 3 2 1 5 5 N 1.34947 * 107.74449 * 0.02562 * 4 3 2 6 6 C 1.46503 * 126.03787 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47005 * 124.99620 * 6 5 4 8 8 O 1.21284 * 120.00087 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00162 * 180.02562 * 7 6 5 10 10 C 1.46933 * 120.62602 * 359.97327 * 9 7 6 11 11 C 1.53188 * 108.77495 * 233.63137 * 10 9 7 12 12 C 1.53034 * 109.31404 * 305.36890 * 11 10 9 13 13 C 1.53346 * 109.61010 * 61.37429 * 12 11 10 14 14 H 1.09002 * 109.47277 * 58.54691 * 13 12 11 15 15 C 1.50698 * 109.68835 * 178.74685 * 13 12 11 16 16 H 1.08009 * 119.99739 * 359.75029 * 15 13 12 17 17 C 1.37876 * 120.00334 * 179.75168 * 15 13 12 18 18 N 1.31517 * 119.99819 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00035 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47523 * 89.99881 * 19 17 15 21 21 H 1.48500 * 109.46942 * 210.00260 * 19 17 15 22 22 H 1.48506 * 109.47413 * 329.99809 * 19 17 15 23 23 C 1.46919 * 120.63395 * 180.02562 * 9 7 6 24 24 N 1.30835 * 125.90258 * 180.29546 * 2 1 3 25 25 H 1.09005 * 109.47028 * 90.00864 * 1 2 3 26 26 H 1.08999 * 109.47215 * 210.00246 * 1 2 3 27 27 H 1.09004 * 109.47960 * 330.00531 * 1 2 3 28 28 H 1.08003 * 126.04418 * 359.97438 * 3 2 1 29 29 H 1.08000 * 126.12537 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.46507 * 5.00008 * 6 5 4 31 31 H 1.08993 * 109.46902 * 244.99790 * 6 5 4 32 32 H 1.08994 * 109.58580 * 353.42544 * 10 9 7 33 33 H 1.09002 * 109.58042 * 113.84624 * 10 9 7 34 34 H 1.08994 * 109.49494 * 65.32533 * 11 10 9 35 35 H 1.09000 * 109.49460 * 185.41816 * 11 10 9 36 36 H 1.08999 * 109.45836 * 181.38851 * 12 11 10 37 37 H 1.09000 * 109.46169 * 301.34220 * 12 11 10 38 38 H 0.96996 * 119.99912 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.58751 * 246.15665 * 23 9 7 40 40 H 1.08996 * 109.58750 * 6.43850 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3270 1.1331 0.0000 4 6 3.6142 0.7155 0.0006 5 7 3.6087 -0.6340 0.0004 6 6 4.7899 -1.5006 0.0003 7 6 4.7128 -2.4549 1.1640 8 8 3.7648 -2.4148 1.9194 9 7 5.6978 -3.3524 1.3660 10 6 6.8529 -3.4128 0.4598 11 6 7.0049 -4.8493 -0.0501 12 6 7.0917 -5.8035 1.1432 13 6 5.8005 -5.7173 1.9660 14 1 4.9493 -5.9705 1.3340 15 6 5.8714 -6.6787 3.1243 16 1 6.7474 -7.2955 3.2612 17 6 4.8181 -6.7710 4.0092 18 7 3.7513 -6.0203 3.8421 19 14 4.9065 -7.9622 5.4453 20 1 5.5084 -7.2795 6.6186 21 1 3.5379 -8.4245 5.7898 22 1 5.7433 -9.1300 5.0692 23 6 5.6365 -4.2897 2.4958 24 7 2.2742 -1.0598 -0.0055 25 1 -0.3633 -0.0002 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3635 0.8900 0.5137 28 1 1.9921 2.1599 -0.0004 29 1 4.4890 1.3488 0.0011 30 1 5.6884 -0.8901 0.0900 31 1 4.8259 -2.0655 -0.9311 32 1 6.6915 -2.7409 -0.3831 33 1 7.7544 -3.1184 0.9971 34 1 6.1426 -5.1108 -0.6632 35 1 7.9137 -4.9292 -0.6466 36 1 7.2247 -6.8237 0.7834 37 1 7.9398 -5.5260 1.7692 38 1 3.0101 -6.0855 4.4644 39 1 6.4387 -4.0669 3.1993 40 1 4.6736 -4.1946 2.9976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597899501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:24 Heat of formation + Delta-G solvation = 40.841132 kcal Electronic energy + Delta-G solvation = -21769.135601 eV Core-core repulsion = 18585.581015 eV Total energy + Delta-G solvation = -3183.554586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04761 -39.34394 -36.73066 -33.81624 -33.30740 -31.82529 -30.43810 -29.78810 -29.19690 -26.34820 -25.05694 -24.01760 -21.88300 -21.05741 -20.17830 -19.44493 -18.34109 -17.02015 -16.79254 -16.09870 -15.32768 -14.86389 -14.54601 -14.35030 -13.94124 -13.76780 -13.62774 -13.16173 -13.05588 -12.79335 -12.65294 -12.41407 -12.26771 -11.95123 -11.92554 -11.73527 -11.03643 -10.92683 -10.54445 -10.44276 -10.28966 -10.25465 -9.93365 -9.47679 -9.14887 -9.05933 -8.84406 -8.45082 -8.34904 -7.80035 -5.99844 -4.09544 2.06091 2.57039 2.98859 3.09846 3.30562 3.37984 3.40106 3.63935 4.42087 4.56916 4.80134 4.84337 5.01374 5.12676 5.19118 5.29856 5.38048 5.42213 5.57655 5.70533 5.74549 5.89489 5.94097 5.97094 6.09558 6.23348 6.25693 6.55286 6.61982 6.79060 6.85864 6.93080 7.05055 7.15547 7.23830 7.61893 7.84958 7.97079 7.97246 8.17718 8.37144 8.78394 8.94867 9.56413 11.05205 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.004783 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.684454 B = 5852.699443 C = 6915.986484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.057 3.943 3 C -0.272 4.272 4 C 0.049 3.951 5 N -0.358 5.358 6 C 0.114 3.886 7 C 0.491 3.509 8 O -0.506 6.506 9 N -0.606 5.606 10 C 0.107 3.893 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.041 3.959 14 H 0.029 0.971 15 C -0.523 4.523 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.879 5.879 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.114 3.886 24 N -0.256 5.256 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.170 0.830 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.264 0.736 39 H 0.042 0.958 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 13.013 -10.364 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.110 4.110 3 C -0.302 4.302 4 C -0.097 4.097 5 N -0.140 5.140 6 C -0.011 4.011 7 C 0.275 3.725 8 O -0.380 6.380 9 N -0.341 5.341 10 C -0.017 4.017 11 C -0.173 4.173 12 C -0.149 4.149 13 C 0.021 3.979 14 H 0.047 0.953 15 C -0.561 4.561 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.516 5.516 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.006 4.006 24 N -0.078 5.078 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.162 0.838 29 H 0.188 0.812 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.742 11.707 -9.855 15.547 hybrid contribution 0.328 0.273 0.778 0.887 sum 3.070 11.980 -9.077 15.341 Atomic orbital electron populations 1.20118 0.86993 1.03218 1.02451 1.22384 0.97003 0.90889 1.00768 1.21299 0.91640 0.99506 1.17763 1.22467 0.99680 0.84661 1.02847 1.48074 1.05112 1.04114 1.56658 1.21616 0.85259 0.93762 1.00475 1.20286 0.83540 0.82255 0.86417 1.90801 1.31413 1.69612 1.46128 1.48517 1.20278 1.35146 1.30116 1.21678 0.89423 0.97836 0.92729 1.21944 1.01087 0.95086 0.99134 1.21673 1.00482 0.97380 0.95342 1.19015 0.92228 0.91790 0.94827 0.95308 1.21056 1.02741 1.21885 1.10464 0.92343 1.25064 0.95283 0.95752 0.97937 1.69889 1.06124 1.38694 1.36891 0.86587 0.77330 0.81331 0.82725 1.20645 1.21177 1.19905 1.22301 1.04737 0.88079 0.85500 1.77549 0.85935 1.22225 1.22138 0.90962 0.90862 0.90782 0.83830 0.81233 0.86469 0.87392 0.91532 0.91689 0.92053 0.92080 0.92951 0.93149 0.92590 0.93963 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.44 36.00 0.38 -0.45 16 2 C 0.06 0.90 7.22 -82.41 -0.59 0.30 16 3 C -0.27 -3.62 10.74 -40.01 -0.43 -4.05 16 4 C 0.05 0.63 11.45 -17.22 -0.20 0.43 16 5 N -0.36 -5.80 3.39 -62.55 -0.21 -6.01 16 6 C 0.11 1.62 5.34 -5.19 -0.03 1.59 16 7 C 0.49 9.81 7.73 -10.98 -0.08 9.73 16 8 O -0.51 -12.92 15.13 5.55 0.08 -12.84 16 9 N -0.61 -11.77 2.97 -172.80 -0.51 -12.28 16 10 C 0.11 1.52 6.34 -3.71 -0.02 1.49 16 11 C -0.13 -2.04 6.08 -26.62 -0.16 -2.20 16 12 C -0.11 -2.15 5.13 -26.53 -0.14 -2.29 16 13 C 0.04 1.00 2.26 -91.51 -0.21 0.79 16 14 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 15 C -0.52 -14.19 8.57 -34.44 -0.30 -14.49 16 16 H 0.06 1.55 7.75 -52.48 -0.41 1.14 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -26.09 11.39 55.43 0.63 -25.46 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 23 C 0.11 2.75 5.39 -3.73 -0.02 2.73 16 24 N -0.26 -4.90 11.66 33.67 0.39 -4.51 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.14 1.47 8.06 -52.48 -0.42 1.04 16 29 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.12 1.13 7.87 -51.93 -0.41 0.72 16 31 H 0.11 1.33 7.69 -51.93 -0.40 0.93 16 32 H 0.07 0.69 5.93 -51.93 -0.31 0.38 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.12 3.52 5.11 -51.93 -0.27 3.26 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -35.53 327.61 -7.60 -43.12 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.00 Total: 1.40 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.90 Total: -4.76 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.30 Total: -48.27 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.53 -7.60 -43.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.962 kcal (2) G-P(sol) polarization free energy of solvation -35.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds