Wall clock time and date at job start Mon Mar 30 2020 02:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39872 * 125.89422 * 2 1 4 4 C 1.35322 * 107.91948 * 179.97438 * 3 2 1 5 5 N 1.34947 * 107.74449 * 0.02562 * 4 3 2 6 6 C 1.46503 * 126.03787 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47005 * 124.99620 * 6 5 4 8 8 O 1.21284 * 120.00087 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00162 * 180.02562 * 7 6 5 10 10 C 1.46933 * 120.62602 * 359.97327 * 9 7 6 11 11 C 1.53188 * 108.77495 * 233.63137 * 10 9 7 12 12 C 1.53034 * 109.31404 * 305.36890 * 11 10 9 13 13 C 1.53346 * 109.61010 * 61.37429 * 12 11 10 14 14 H 1.09002 * 109.47277 * 58.54691 * 13 12 11 15 15 C 1.50698 * 109.68835 * 178.74685 * 13 12 11 16 16 H 1.08009 * 119.99739 * 359.75029 * 15 13 12 17 17 C 1.37876 * 120.00334 * 179.75168 * 15 13 12 18 18 N 1.31517 * 119.99819 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00035 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47523 * 89.99881 * 19 17 15 21 21 H 1.48500 * 109.46942 * 210.00260 * 19 17 15 22 22 H 1.48506 * 109.47413 * 329.99809 * 19 17 15 23 23 C 1.46919 * 120.63395 * 180.02562 * 9 7 6 24 24 N 1.30835 * 125.90258 * 180.29546 * 2 1 3 25 25 H 1.09005 * 109.47028 * 90.00864 * 1 2 3 26 26 H 1.08999 * 109.47215 * 210.00246 * 1 2 3 27 27 H 1.09004 * 109.47960 * 330.00531 * 1 2 3 28 28 H 1.08003 * 126.04418 * 359.97438 * 3 2 1 29 29 H 1.08000 * 126.12537 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.46507 * 5.00008 * 6 5 4 31 31 H 1.08993 * 109.46902 * 244.99790 * 6 5 4 32 32 H 1.08994 * 109.58580 * 353.42544 * 10 9 7 33 33 H 1.09002 * 109.58042 * 113.84624 * 10 9 7 34 34 H 1.08994 * 109.49494 * 65.32533 * 11 10 9 35 35 H 1.09000 * 109.49460 * 185.41816 * 11 10 9 36 36 H 1.08999 * 109.45836 * 181.38851 * 12 11 10 37 37 H 1.09000 * 109.46169 * 301.34220 * 12 11 10 38 38 H 0.96996 * 119.99912 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.58751 * 246.15665 * 23 9 7 40 40 H 1.08996 * 109.58750 * 6.43850 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3270 1.1331 0.0000 4 6 3.6142 0.7155 0.0006 5 7 3.6087 -0.6340 0.0004 6 6 4.7899 -1.5006 0.0003 7 6 4.7128 -2.4549 1.1640 8 8 3.7648 -2.4148 1.9194 9 7 5.6978 -3.3524 1.3660 10 6 6.8529 -3.4128 0.4598 11 6 7.0049 -4.8493 -0.0501 12 6 7.0917 -5.8035 1.1432 13 6 5.8005 -5.7173 1.9660 14 1 4.9493 -5.9705 1.3340 15 6 5.8714 -6.6787 3.1243 16 1 6.7474 -7.2955 3.2612 17 6 4.8181 -6.7710 4.0092 18 7 3.7513 -6.0203 3.8421 19 14 4.9065 -7.9622 5.4453 20 1 5.5084 -7.2795 6.6186 21 1 3.5379 -8.4245 5.7898 22 1 5.7433 -9.1300 5.0692 23 6 5.6365 -4.2897 2.4958 24 7 2.2742 -1.0598 -0.0055 25 1 -0.3633 -0.0002 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3635 0.8900 0.5137 28 1 1.9921 2.1599 -0.0004 29 1 4.4890 1.3488 0.0011 30 1 5.6884 -0.8901 0.0900 31 1 4.8259 -2.0655 -0.9311 32 1 6.6915 -2.7409 -0.3831 33 1 7.7544 -3.1184 0.9971 34 1 6.1426 -5.1108 -0.6632 35 1 7.9137 -4.9292 -0.6466 36 1 7.2247 -6.8237 0.7834 37 1 7.9398 -5.5260 1.7692 38 1 3.0101 -6.0855 4.4644 39 1 6.4387 -4.0669 3.1993 40 1 4.6736 -4.1946 2.9976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597899501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:23 Heat of formation + Delta-G solvation = 15.974210 kcal Electronic energy + Delta-G solvation = -21770.213912 eV Core-core repulsion = 18585.581015 eV Total energy + Delta-G solvation = -3184.632897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.14341 -40.84659 -38.34701 -35.41851 -34.76885 -33.47802 -31.79157 -31.16083 -30.34840 -27.73153 -26.82427 -25.49899 -23.45736 -22.13542 -21.61875 -20.71244 -19.79960 -18.61210 -18.18408 -17.75058 -16.81530 -16.45964 -16.21537 -15.64311 -15.24171 -15.02211 -14.87366 -14.63647 -14.35765 -14.20951 -14.08874 -13.72368 -13.52236 -13.43863 -12.96301 -12.91584 -12.88417 -12.69291 -12.31398 -12.26509 -11.82330 -11.65716 -11.38002 -11.15808 -10.97538 -10.78091 -10.55851 -10.09172 -9.45554 -9.40466 -8.14276 -6.32514 1.00001 1.37394 1.37687 1.49082 1.55828 1.64143 1.95141 2.22152 2.39261 3.13615 3.45021 3.70240 3.98120 4.03236 4.10880 4.12271 4.19075 4.32549 4.45719 4.59759 4.72973 4.79141 4.81445 4.82749 4.86195 4.95526 5.03759 5.09539 5.24119 5.26534 5.27347 5.33745 5.51426 5.61284 5.81141 5.87447 5.97607 6.17484 6.30054 6.62914 6.81778 6.89075 7.29368 7.38795 8.88569 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.004783 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.684454 B = 5852.699443 C = 6915.986484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.041 3.959 3 C -0.284 4.284 4 C 0.058 3.942 5 N -0.374 5.374 6 C 0.124 3.876 7 C 0.479 3.521 8 O -0.577 6.577 9 N -0.608 5.608 10 C 0.100 3.900 11 C -0.129 4.129 12 C -0.106 4.106 13 C 0.038 3.962 14 H -0.020 1.020 15 C -0.536 4.536 16 H 0.064 0.936 17 C 0.007 3.993 18 N -0.918 5.918 19 Si 0.959 3.041 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.260 1.260 23 C 0.127 3.873 24 N -0.333 5.333 25 H 0.090 0.910 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.174 0.826 29 H 0.221 0.779 30 H 0.176 0.824 31 H 0.131 0.869 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.109 0.891 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.258 0.742 39 H 0.038 0.962 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 14.986 -12.115 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.125 4.125 3 C -0.313 4.313 4 C -0.086 4.086 5 N -0.157 5.157 6 C -0.001 4.001 7 C 0.266 3.734 8 O -0.456 6.456 9 N -0.341 5.341 10 C -0.021 4.021 11 C -0.167 4.167 12 C -0.144 4.144 13 C 0.019 3.981 14 H -0.002 1.002 15 C -0.575 4.575 16 H 0.082 0.918 17 C -0.192 4.192 18 N -0.556 5.556 19 Si 0.784 3.216 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.184 1.184 23 C 0.004 3.996 24 N -0.156 5.156 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.192 0.808 29 H 0.238 0.762 30 H 0.193 0.807 31 H 0.148 0.852 32 H 0.137 0.863 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.127 0.873 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.686 13.679 -11.653 18.848 hybrid contribution -0.563 -0.327 1.303 1.457 sum 5.122 13.352 -10.350 17.653 Atomic orbital electron populations 1.20237 0.85446 1.03356 1.03695 1.23049 0.98438 0.91398 0.99647 1.21758 0.91663 1.00231 1.17647 1.23330 1.01366 0.83706 1.00198 1.48259 1.04524 1.05508 1.57368 1.21822 0.86881 0.93528 0.97826 1.21447 0.82146 0.82558 0.87220 1.90770 1.34103 1.71684 1.49039 1.48536 1.22066 1.33920 1.29614 1.22143 0.88071 0.98341 0.93577 1.21928 1.02881 0.94463 0.97378 1.21564 0.97368 0.98875 0.96552 1.18954 0.93380 0.91640 0.94170 1.00151 1.21550 1.02621 1.22204 1.11090 0.91804 1.25943 0.94946 0.97436 1.00858 1.70122 1.06925 1.40655 1.37940 0.85544 0.77202 0.79459 0.79423 1.19892 1.21531 1.18401 1.21623 1.01548 0.89251 0.87140 1.77465 0.88072 1.24765 1.25264 0.89109 0.92993 0.88274 0.80821 0.76223 0.80678 0.85151 0.86331 0.89276 0.93361 0.87288 0.93239 0.92164 0.93322 0.94413 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 10.44 71.23 0.74 -0.92 16 2 C 0.04 1.30 7.22 43.10 0.31 1.61 16 3 C -0.28 -6.93 10.74 21.99 0.24 -6.69 16 4 C 0.06 1.32 11.45 83.54 0.96 2.27 16 5 N -0.37 -11.52 3.39 -351.80 -1.19 -12.71 16 6 C 0.12 3.13 5.34 85.63 0.46 3.58 16 7 C 0.48 19.20 7.73 87.66 0.68 19.88 16 8 O -0.58 -31.26 15.13 -3.04 -0.05 -31.31 16 9 N -0.61 -23.36 2.97 -818.99 -2.44 -25.79 16 10 C 0.10 2.42 6.34 86.36 0.55 2.97 16 11 C -0.13 -3.48 6.08 30.67 0.19 -3.30 16 12 C -0.11 -3.99 5.13 30.72 0.16 -3.83 16 13 C 0.04 1.93 2.26 -11.37 -0.03 1.91 16 14 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 15 C -0.54 -30.07 8.57 25.60 0.22 -29.85 16 16 H 0.06 3.41 7.75 -2.91 -0.02 3.39 16 17 C 0.01 0.42 5.30 84.65 0.45 0.87 16 18 N -0.92 -58.11 11.39 21.45 0.24 -57.87 16 19 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 23 C 0.13 6.40 5.39 86.35 0.47 6.87 16 24 N -0.33 -13.02 11.66 -47.39 -0.55 -13.58 16 25 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 29 H 0.22 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.18 2.29 7.87 -2.39 -0.02 2.27 16 31 H 0.13 2.70 7.69 -2.39 -0.02 2.69 16 32 H 0.12 1.70 5.93 -2.39 -0.01 1.68 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 35 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 39 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 4.29 5.11 -2.39 -0.01 4.28 16 Total: -1.00 -89.17 327.61 4.45 -84.73 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 1.02 Total: 13.81 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 5.38 Total: -4.63 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -3.94 Total: -109.94 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.05 Total: -31.31 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -89.17 4.45 -84.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.701 kcal (2) G-P(sol) polarization free energy of solvation -89.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds