Wall clock time and date at job start Mon Mar 30 2020 02:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34126 * 125.98696 * 2 1 4 4 C 1.30500 * 109.25531 * 179.97438 * 3 2 1 5 5 N 1.35044 * 108.69938 * 0.02562 * 4 3 2 6 6 H 0.97000 * 126.39550 * 179.97438 * 5 4 3 7 7 C 1.34668 * 125.98950 * 179.69025 * 2 1 3 8 8 C 1.50694 * 126.59038 * 359.96361 * 7 2 1 9 9 C 1.50695 * 109.47349 * 85.00160 * 8 7 2 10 10 O 1.21282 * 119.99848 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00214 * 180.02562 * 9 8 7 12 12 C 1.46930 * 120.63057 * 359.71799 * 11 9 8 13 13 C 1.53619 * 108.54321 * 126.37006 * 12 11 9 14 14 C 1.53043 * 109.24375 * 54.85786 * 13 12 11 15 15 C 1.53036 * 109.53398 * 298.50871 * 14 13 12 16 16 H 1.09000 * 109.50003 * 301.40893 * 15 14 13 17 17 C 1.50701 * 109.49416 * 181.31686 * 15 14 13 18 18 H 1.07994 * 120.00096 * 0.16205 * 17 15 14 19 19 C 1.37881 * 120.00038 * 180.15927 * 17 15 14 20 20 N 1.31514 * 119.99952 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00109 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46813 * 90.00526 * 21 19 17 23 23 H 1.48494 * 109.47089 * 210.00175 * 21 19 17 24 24 H 1.48498 * 109.46940 * 330.00642 * 21 19 17 25 25 C 1.46926 * 120.63430 * 179.97438 * 11 9 8 26 26 H 1.09002 * 109.47152 * 90.02483 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.02583 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.02564 * 1 2 3 29 29 H 1.08003 * 125.65233 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47298 * 205.00184 * 8 7 2 31 31 H 1.09003 * 109.47428 * 324.99393 * 8 7 2 32 32 H 1.09003 * 109.58355 * 246.20162 * 12 11 9 33 33 H 1.09004 * 109.58544 * 6.62440 * 12 11 9 34 34 H 1.08998 * 109.63574 * 294.86069 * 13 12 11 35 35 H 1.09002 * 109.45398 * 174.74010 * 13 12 11 36 36 H 1.09002 * 109.45483 * 178.48714 * 14 13 12 37 37 H 1.09000 * 109.44653 * 58.52215 * 14 13 12 38 38 H 0.97000 * 120.00389 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.58305 * 353.36676 * 25 11 9 40 40 H 1.09003 * 109.58999 * 113.79387 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7096 0.0006 5 7 3.5913 -0.6401 0.0004 6 1 4.3914 -1.1885 0.0003 7 6 2.2984 -1.0896 0.0059 8 6 1.8472 -2.5274 0.0144 9 6 1.5780 -2.9779 -1.3982 10 8 1.7364 -2.2070 -2.3210 11 7 1.1602 -4.2370 -1.6360 12 6 0.9686 -5.1838 -0.5289 13 6 -0.4539 -5.7571 -0.6170 14 6 -0.6684 -6.3630 -2.0059 15 6 -0.5228 -5.2713 -3.0685 16 1 -1.2486 -4.4804 -2.8794 17 6 -0.7661 -5.8622 -4.4333 18 1 -1.0037 -6.9109 -4.5331 19 6 -0.6854 -5.0639 -5.5546 20 7 -0.3956 -3.7868 -5.4331 21 14 -0.9862 -5.7965 -7.2464 22 1 -2.4294 -5.6931 -7.5810 23 1 -0.1896 -5.0542 -8.2560 24 1 -0.5791 -7.2246 -7.2469 25 6 0.8931 -4.6906 -3.0077 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 0.8902 0.5134 28 1 -0.3633 -0.8898 0.5143 29 1 4.4004 1.3688 0.0011 30 1 2.6274 -3.1504 0.4520 31 1 0.9356 -2.6187 0.6050 32 1 1.6965 -5.9912 -0.6086 33 1 1.0971 -4.6656 0.4214 34 1 -1.1803 -4.9616 -0.4509 35 1 -0.5813 -6.5302 0.1408 36 1 -1.6676 -6.7947 -2.0633 37 1 0.0742 -7.1414 -2.1809 38 1 -0.3385 -3.2252 -6.2219 39 1 0.9716 -3.8469 -3.6933 40 1 1.6149 -5.4586 -3.2858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:56 Heat of formation + Delta-G solvation = 9.080321 kcal Electronic energy + Delta-G solvation = -22026.380384 eV Core-core repulsion = 18841.448546 eV Total energy + Delta-G solvation = -3184.931838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.96758 -39.34583 -36.69473 -33.48402 -32.95627 -32.45155 -31.72068 -29.87386 -28.64982 -25.96250 -25.03241 -24.11770 -21.87037 -21.56568 -20.15311 -19.31683 -18.31909 -17.49301 -16.85309 -16.09174 -15.18326 -15.17165 -14.66157 -14.53112 -14.19305 -13.71255 -13.33045 -13.11793 -12.70151 -12.66084 -12.55705 -12.53517 -12.38086 -11.95177 -11.89677 -11.65584 -11.01049 -10.93558 -10.51735 -10.42619 -10.24650 -9.91250 -9.82929 -9.71815 -9.29470 -9.13176 -8.91665 -8.43531 -8.02454 -7.75728 -6.00003 -4.09252 2.13020 3.15859 3.25021 3.28207 3.30627 3.37893 3.39760 3.79852 4.42375 4.65204 4.86412 5.03372 5.08174 5.24789 5.30191 5.38064 5.43744 5.47649 5.51799 5.62479 5.95129 5.98829 6.12701 6.15045 6.23938 6.28176 6.33242 6.57817 6.64634 6.82498 6.92940 6.95628 7.13265 7.27111 7.49048 7.63581 7.86322 7.99211 8.21171 8.24392 8.38143 8.86589 8.95646 9.56604 11.05020 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021335 B = 0.004937 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.081773 B = 5669.974935 C = 6384.886249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.020 3.980 3 N -0.493 5.493 4 C 0.181 3.819 5 N -0.564 5.564 6 H 0.416 0.584 7 C 0.000 4.000 8 C -0.066 4.066 9 C 0.503 3.497 10 O -0.525 6.525 11 N -0.607 5.607 12 C 0.107 3.893 13 C -0.134 4.134 14 C -0.111 4.111 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.879 5.879 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.113 3.887 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.205 0.795 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.264 0.736 39 H 0.123 0.877 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.647 1.061 14.689 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 N -0.213 5.213 4 C -0.102 4.102 5 N -0.167 5.167 6 H 0.253 0.747 7 C -0.115 4.115 8 C -0.107 4.107 9 C 0.289 3.711 10 O -0.401 6.401 11 N -0.341 5.341 12 C -0.016 4.016 13 C -0.172 4.172 14 C -0.148 4.148 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.561 4.561 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.517 5.517 21 Si 0.719 3.281 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.007 4.007 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.222 0.778 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.440 2.485 14.058 15.661 hybrid contribution 0.698 -1.540 -0.968 1.949 sum 7.138 0.945 13.090 14.939 Atomic orbital electron populations 1.20044 0.87842 1.01883 1.02826 1.20398 0.96372 0.87758 1.06384 1.70132 1.00556 1.30755 1.19832 1.24784 0.97309 0.81878 1.06234 1.43082 1.07911 1.08630 1.57074 0.74679 1.20257 0.83948 0.95645 1.11682 1.20122 1.03148 0.90323 0.97153 1.20274 0.78382 0.82221 0.90212 1.90750 1.51403 1.52461 1.45455 1.48523 1.65422 1.10504 1.09654 1.21747 0.97585 0.92869 0.89438 1.22022 0.96029 1.00076 0.99086 1.21625 1.00401 0.99298 0.93521 1.18955 0.92672 0.93167 0.93092 0.95288 1.21075 1.48741 0.95669 0.90623 0.92398 1.25055 0.94873 0.94820 0.99248 1.69883 1.47400 1.04633 1.29742 0.86605 0.78228 0.79141 0.84107 1.20638 1.21208 1.19926 1.22272 0.97818 1.01347 0.79272 0.90827 0.91506 0.91716 0.77805 0.88987 0.87125 0.92044 0.91208 0.92003 0.92253 0.93006 0.93249 0.92633 0.85957 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.22 36.01 0.37 -0.64 16 2 C 0.02 0.33 7.09 -82.85 -0.59 -0.26 16 3 N -0.49 -8.11 11.25 -10.87 -0.12 -8.24 16 4 C 0.18 2.31 13.04 -90.37 -1.18 1.13 16 5 N -0.56 -6.88 6.15 -10.30 -0.06 -6.94 16 6 H 0.42 3.62 8.96 -40.82 -0.37 3.26 16 7 C 0.00 0.00 5.73 -81.60 -0.47 -0.47 16 8 C -0.07 -0.89 4.33 -29.04 -0.13 -1.01 16 9 C 0.50 9.58 7.69 -10.99 -0.08 9.49 16 10 O -0.52 -12.69 15.45 5.56 0.09 -12.61 16 11 N -0.61 -11.54 2.97 -172.52 -0.51 -12.06 16 12 C 0.11 1.52 6.37 -3.49 -0.02 1.50 16 13 C -0.13 -2.02 6.10 -26.39 -0.16 -2.18 16 14 C -0.11 -2.13 5.10 -26.69 -0.14 -2.26 16 15 C 0.04 0.98 2.25 -91.67 -0.21 0.77 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.52 -14.04 8.56 -34.44 -0.29 -14.33 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.88 -25.70 11.39 55.43 0.63 -25.07 16 21 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.11 2.68 5.40 -3.73 -0.02 2.66 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.82 7.27 -51.93 -0.38 0.44 16 29 H 0.21 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.09 0.94 7.93 -51.93 -0.41 0.53 16 31 H 0.11 1.27 6.89 -51.93 -0.36 0.91 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.75 5.93 -51.93 -0.31 0.44 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.12 3.45 5.12 -51.93 -0.27 3.18 16 40 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 324.76 15.07 4.89 4.89 Total: -1.00 -34.77 324.76 -8.97 -43.75 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.86 Total: 4.01 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -3.01 Total: -3.96 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.07 Total: -52.30 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.77 -8.97 -43.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.829 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds