Wall clock time and date at job start Mon Mar 30 2020 02:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34126 * 125.98696 * 2 1 4 4 C 1.30500 * 109.25531 * 179.97438 * 3 2 1 5 5 N 1.35044 * 108.69938 * 0.02562 * 4 3 2 6 6 H 0.97000 * 126.39550 * 179.97438 * 5 4 3 7 7 C 1.34668 * 125.98950 * 179.69025 * 2 1 3 8 8 C 1.50694 * 126.59038 * 359.96361 * 7 2 1 9 9 C 1.50695 * 109.47349 * 85.00160 * 8 7 2 10 10 O 1.21282 * 119.99848 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00214 * 180.02562 * 9 8 7 12 12 C 1.46930 * 120.63057 * 359.71799 * 11 9 8 13 13 C 1.53619 * 108.54321 * 126.37006 * 12 11 9 14 14 C 1.53043 * 109.24375 * 54.85786 * 13 12 11 15 15 C 1.53036 * 109.53398 * 298.50871 * 14 13 12 16 16 H 1.09000 * 109.50003 * 301.40893 * 15 14 13 17 17 C 1.50701 * 109.49416 * 181.31686 * 15 14 13 18 18 H 1.07994 * 120.00096 * 0.16205 * 17 15 14 19 19 C 1.37881 * 120.00038 * 180.15927 * 17 15 14 20 20 N 1.31514 * 119.99952 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00109 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46813 * 90.00526 * 21 19 17 23 23 H 1.48494 * 109.47089 * 210.00175 * 21 19 17 24 24 H 1.48498 * 109.46940 * 330.00642 * 21 19 17 25 25 C 1.46926 * 120.63430 * 179.97438 * 11 9 8 26 26 H 1.09002 * 109.47152 * 90.02483 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.02583 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.02564 * 1 2 3 29 29 H 1.08003 * 125.65233 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47298 * 205.00184 * 8 7 2 31 31 H 1.09003 * 109.47428 * 324.99393 * 8 7 2 32 32 H 1.09003 * 109.58355 * 246.20162 * 12 11 9 33 33 H 1.09004 * 109.58544 * 6.62440 * 12 11 9 34 34 H 1.08998 * 109.63574 * 294.86069 * 13 12 11 35 35 H 1.09002 * 109.45398 * 174.74010 * 13 12 11 36 36 H 1.09002 * 109.45483 * 178.48714 * 14 13 12 37 37 H 1.09000 * 109.44653 * 58.52215 * 14 13 12 38 38 H 0.97000 * 120.00389 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.58305 * 353.36676 * 25 11 9 40 40 H 1.09003 * 109.58999 * 113.79387 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7096 0.0006 5 7 3.5913 -0.6401 0.0004 6 1 4.3914 -1.1885 0.0003 7 6 2.2984 -1.0896 0.0059 8 6 1.8472 -2.5274 0.0144 9 6 1.5780 -2.9779 -1.3982 10 8 1.7364 -2.2070 -2.3210 11 7 1.1602 -4.2370 -1.6360 12 6 0.9686 -5.1838 -0.5289 13 6 -0.4539 -5.7571 -0.6170 14 6 -0.6684 -6.3630 -2.0059 15 6 -0.5228 -5.2713 -3.0685 16 1 -1.2486 -4.4804 -2.8794 17 6 -0.7661 -5.8622 -4.4333 18 1 -1.0037 -6.9109 -4.5331 19 6 -0.6854 -5.0639 -5.5546 20 7 -0.3956 -3.7868 -5.4331 21 14 -0.9862 -5.7965 -7.2464 22 1 -2.4294 -5.6931 -7.5810 23 1 -0.1896 -5.0542 -8.2560 24 1 -0.5791 -7.2246 -7.2469 25 6 0.8931 -4.6906 -3.0077 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 0.8902 0.5134 28 1 -0.3633 -0.8898 0.5143 29 1 4.4004 1.3688 0.0011 30 1 2.6274 -3.1504 0.4520 31 1 0.9356 -2.6187 0.6050 32 1 1.6965 -5.9912 -0.6086 33 1 1.0971 -4.6656 0.4214 34 1 -1.1803 -4.9616 -0.4509 35 1 -0.5813 -6.5302 0.1408 36 1 -1.6676 -6.7947 -2.0633 37 1 0.0742 -7.1414 -2.1809 38 1 -0.3385 -3.2252 -6.2219 39 1 0.9716 -3.8469 -3.6933 40 1 1.6149 -5.4586 -3.2858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:55 Heat of formation + Delta-G solvation = -14.278878 kcal Electronic energy + Delta-G solvation = -22027.393315 eV Core-core repulsion = 18841.448546 eV Total energy + Delta-G solvation = -3185.944769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.01913 -40.84327 -38.28437 -35.32055 -34.02124 -33.80590 -33.22630 -31.52151 -29.87609 -27.33707 -26.73945 -25.58028 -23.41382 -22.64340 -21.63474 -20.56930 -19.72471 -18.61690 -18.51074 -17.83493 -16.72508 -16.48929 -16.33408 -15.85661 -15.40885 -15.12851 -14.76672 -14.63753 -14.20467 -14.05735 -13.87821 -13.72482 -13.70758 -13.45247 -13.07795 -12.91643 -12.87900 -12.65850 -12.25742 -12.22138 -11.77637 -11.60602 -11.10573 -10.94148 -10.91558 -10.83048 -10.58263 -10.48819 -9.35439 -9.13928 -8.11380 -6.28613 1.04821 1.39025 1.39771 1.50442 1.78991 2.12544 2.27975 2.38928 2.47231 3.17086 3.63156 3.78982 3.94186 4.09941 4.14824 4.22802 4.38688 4.40722 4.47276 4.48764 4.64540 4.80057 4.82696 4.85610 4.92240 5.04201 5.07727 5.13953 5.26582 5.29222 5.33159 5.39374 5.55736 5.68379 5.82893 5.92649 6.02640 6.34107 6.61578 6.74839 6.85228 7.16648 7.39797 7.43780 8.91288 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021335 B = 0.004937 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.081773 B = 5669.974935 C = 6384.886249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.015 4.015 3 N -0.538 5.538 4 C 0.192 3.808 5 N -0.554 5.554 6 H 0.433 0.567 7 C -0.011 4.011 8 C -0.051 4.051 9 C 0.496 3.504 10 O -0.589 6.589 11 N -0.610 5.610 12 C 0.101 3.899 13 C -0.128 4.128 14 C -0.106 4.106 15 C 0.038 3.962 16 H -0.015 1.015 17 C -0.536 4.536 18 H 0.061 0.939 19 C 0.010 3.990 20 N -0.915 5.915 21 Si 0.955 3.045 22 H -0.275 1.275 23 H -0.289 1.289 24 H -0.261 1.261 25 C 0.126 3.874 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.248 0.752 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.258 0.742 39 H 0.072 0.928 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.851 -0.745 17.343 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 N -0.259 5.259 4 C -0.092 4.092 5 N -0.159 5.159 6 H 0.274 0.726 7 C -0.127 4.127 8 C -0.091 4.091 9 C 0.285 3.715 10 O -0.470 6.470 11 N -0.343 5.343 12 C -0.020 4.020 13 C -0.166 4.166 14 C -0.144 4.144 15 C 0.019 3.981 16 H 0.004 0.996 17 C -0.575 4.575 18 H 0.079 0.921 19 C -0.190 4.190 20 N -0.554 5.554 21 Si 0.781 3.219 22 H -0.201 1.201 23 H -0.215 1.215 24 H -0.185 1.185 25 C 0.004 3.996 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.264 0.736 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 7.649 0.616 16.764 18.437 hybrid contribution 0.343 -0.957 -1.796 2.064 sum 7.993 -0.341 14.968 16.971 Atomic orbital electron populations 1.20020 0.87866 1.03371 1.01099 1.20734 0.97077 0.88765 1.07769 1.70095 1.02262 1.31661 1.21878 1.25638 0.97458 0.82584 1.03521 1.43080 1.07876 1.08764 1.56132 0.72605 1.20431 0.84775 0.95951 1.11537 1.20135 1.05871 0.90036 0.93076 1.21302 0.76796 0.81324 0.92081 1.90727 1.54028 1.54130 1.48080 1.48535 1.65008 1.11702 1.09012 1.22174 0.97423 0.92955 0.89495 1.22000 0.96475 1.00938 0.97179 1.21519 1.00523 0.97704 0.94647 1.18893 0.91752 0.93521 0.93954 0.99641 1.21556 1.47828 0.95837 0.92244 0.92053 1.25888 0.94822 0.95051 1.03211 1.70098 1.48976 1.06114 1.30211 0.85597 0.78093 0.78843 0.79412 1.20102 1.21546 1.18463 1.21609 0.97262 0.99003 0.81753 0.94059 0.90698 0.89627 0.73631 0.84417 0.84464 0.90074 0.86321 0.92798 0.87738 0.93265 0.92588 0.93321 0.90961 0.94876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.99 10.22 71.24 0.73 -1.26 16 2 C -0.02 -0.50 7.09 41.39 0.29 -0.21 16 3 N -0.54 -17.47 11.25 -188.31 -2.12 -19.59 16 4 C 0.19 4.51 13.04 180.26 2.35 6.86 16 5 N -0.55 -12.19 6.15 -186.50 -1.15 -13.34 16 6 H 0.43 6.18 8.96 -92.71 -0.83 5.35 16 7 C -0.01 -0.30 5.73 40.95 0.23 -0.06 16 8 C -0.05 -1.19 4.33 29.10 0.13 -1.07 16 9 C 0.50 18.57 7.69 87.66 0.67 19.24 16 10 O -0.59 -29.66 15.45 -3.04 -0.05 -29.71 16 11 N -0.61 -22.60 2.97 -818.13 -2.43 -25.03 16 12 C 0.10 2.44 6.37 86.51 0.55 2.99 16 13 C -0.13 -3.39 6.10 30.82 0.19 -3.21 16 14 C -0.11 -3.94 5.10 30.62 0.16 -3.78 16 15 C 0.04 1.90 2.25 -11.48 -0.03 1.87 16 16 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 17 C -0.54 -29.57 8.56 25.60 0.22 -29.35 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 19 C 0.01 0.54 5.30 84.66 0.45 0.99 16 20 N -0.92 -56.51 11.39 21.45 0.24 -56.27 16 21 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 25 C 0.13 6.20 5.40 86.35 0.47 6.67 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.08 2.11 7.27 -2.38 -0.02 2.09 16 29 H 0.25 3.18 8.06 -2.91 -0.02 3.16 16 30 H 0.14 2.01 7.93 -2.38 -0.02 1.99 16 31 H 0.14 2.53 6.89 -2.39 -0.02 2.52 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.12 1.77 5.93 -2.39 -0.01 1.75 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 39 H 0.07 4.34 5.12 -2.39 -0.01 4.32 16 40 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -84.06 324.76 3.16 -80.89 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.22 Total: 16.70 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 6.41 Total: -0.32 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -5.45 Total: -114.23 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.05 Total: -29.71 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -84.06 3.16 -80.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.616 kcal (2) G-P(sol) polarization free energy of solvation -84.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds