Wall clock time and date at job start Mon Mar 30 2020 02:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34125 * 125.98994 * 2 1 4 4 C 1.30500 * 109.25480 * 179.88186 * 3 2 1 5 5 N 1.35042 * 108.70247 * 0.38540 * 4 3 2 6 6 H 0.97000 * 126.40122 * 179.76374 * 5 4 3 7 7 C 1.34666 * 125.98978 * 180.31680 * 2 1 3 8 8 C 1.50709 * 126.59004 * 359.93540 * 7 2 1 9 9 C 1.50693 * 109.46745 * 85.00636 * 8 7 2 10 10 O 1.21284 * 120.00596 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00038 * 180.02562 * 9 8 7 12 12 C 1.46928 * 120.63055 * 359.71532 * 11 9 8 13 13 C 1.52753 * 109.01354 * 233.58913 * 12 11 9 14 14 C 1.53047 * 109.37973 * 305.58793 * 13 12 11 15 15 C 1.53041 * 109.53922 * 61.24115 * 14 13 12 16 16 H 1.08999 * 109.49769 * 58.58295 * 15 14 13 17 17 C 1.50704 * 109.52310 * 178.66949 * 15 14 13 18 18 H 1.08005 * 119.99952 * 359.84690 * 17 15 14 19 19 C 1.37875 * 120.00005 * 179.85285 * 17 15 14 20 20 N 1.31519 * 119.99859 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 120.00147 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46920 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47026 * 119.99784 * 21 19 17 24 24 H 1.48502 * 109.47166 * 239.99997 * 21 19 17 25 25 C 1.46926 * 120.63473 * 179.97438 * 11 9 8 26 26 H 1.09002 * 109.47152 * 269.68681 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.68781 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.68762 * 1 2 3 29 29 H 1.08005 * 125.65047 * 180.14544 * 4 3 2 30 30 H 1.09005 * 109.46664 * 205.00349 * 8 7 2 31 31 H 1.09000 * 109.46880 * 325.00363 * 8 7 2 32 32 H 1.09008 * 109.58275 * 353.42350 * 12 11 9 33 33 H 1.09003 * 109.58511 * 113.84568 * 12 11 9 34 34 H 1.09000 * 109.57134 * 185.55370 * 13 12 11 35 35 H 1.09005 * 109.36242 * 65.49318 * 13 12 11 36 36 H 1.09003 * 109.45869 * 301.21652 * 14 13 12 37 37 H 1.09006 * 109.44561 * 181.25452 * 14 13 12 38 38 H 0.96993 * 120.00121 * 180.02562 * 20 19 17 39 39 H 1.08996 * 109.58646 * 246.15430 * 25 11 9 40 40 H 1.08994 * 109.58519 * 6.43617 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 0.0025 5 7 3.5913 -0.6401 -0.0044 6 1 4.3914 -1.1886 -0.0076 7 6 2.2984 -1.0896 -0.0060 8 6 1.8472 -2.5275 -0.0126 9 6 1.5776 -2.9628 -1.4299 10 8 1.7356 -2.1822 -2.3446 11 7 1.1597 -4.2193 -1.6810 12 6 0.9685 -5.1779 -0.5841 13 6 1.7652 -6.4456 -0.8865 14 6 1.3669 -6.9792 -2.2645 15 6 1.6956 -5.9337 -3.3327 16 1 2.7612 -5.7061 -3.3033 17 6 1.3335 -6.4723 -4.6929 18 1 0.9132 -7.4628 -4.7871 19 6 1.5389 -5.7008 -5.8169 20 7 2.0503 -4.4946 -5.7021 21 14 1.0907 -6.3686 -7.5028 22 1 0.5378 -7.7396 -7.3612 23 1 0.0741 -5.4867 -8.1303 24 1 2.3046 -6.4108 -8.3572 25 6 0.8921 -4.6583 -3.0574 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5187 28 1 -0.3633 0.8928 -0.5090 29 1 4.4005 1.3687 0.0054 30 1 2.6275 -3.1551 0.4180 31 1 0.9357 -2.6250 0.5771 32 1 1.3217 -4.7400 0.3496 33 1 -0.0892 -5.4266 -0.4964 34 1 1.5525 -7.2000 -0.1289 35 1 2.8302 -6.2133 -0.8802 36 1 0.2972 -7.1881 -2.2778 37 1 1.9186 -7.8962 -2.4719 38 1 2.1944 -3.9516 -6.4928 39 1 -0.1718 -4.8638 -3.1751 40 1 1.1926 -3.8767 -3.7551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:58 Heat of formation + Delta-G solvation = 8.390935 kcal Electronic energy + Delta-G solvation = -21979.482410 eV Core-core repulsion = 18794.520677 eV Total energy + Delta-G solvation = -3184.961732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.97141 -39.36464 -36.72824 -33.49911 -32.96662 -32.45801 -31.74745 -29.91821 -28.68470 -25.98654 -25.04968 -24.12455 -21.87486 -21.57685 -20.14052 -19.37293 -18.29982 -17.50128 -16.87162 -16.09626 -15.23988 -15.11360 -14.67911 -14.56637 -14.18083 -13.74262 -13.34011 -13.14229 -12.77993 -12.63948 -12.61395 -12.54477 -12.41467 -11.96584 -11.95023 -11.69581 -11.03535 -10.94259 -10.52064 -10.42357 -10.27247 -9.93145 -9.84033 -9.72703 -9.30201 -9.15069 -8.92170 -8.46233 -8.03514 -7.76600 -6.02257 -4.11316 2.12719 3.18117 3.22107 3.27401 3.29056 3.37068 3.39745 3.79285 4.40957 4.65167 4.85906 5.03722 5.05383 5.26232 5.28548 5.37812 5.44651 5.47795 5.48468 5.62436 5.84663 5.94626 6.10647 6.11035 6.14609 6.26131 6.32813 6.55214 6.63148 6.81238 6.90742 6.93220 7.12257 7.26322 7.49523 7.61794 7.83957 7.97139 8.20196 8.23539 8.36204 8.85782 8.93976 9.54780 11.02921 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.004849 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.161112 B = 5773.019964 C = 6493.513226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.015 3.985 3 N -0.493 5.493 4 C 0.182 3.818 5 N -0.562 5.562 6 H 0.417 0.583 7 C 0.003 3.997 8 C -0.067 4.067 9 C 0.503 3.497 10 O -0.524 6.524 11 N -0.607 5.607 12 C 0.108 3.892 13 C -0.134 4.134 14 C -0.111 4.111 15 C 0.040 3.960 16 H 0.027 0.973 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.113 3.887 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.206 0.794 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.263 0.737 39 H 0.042 0.958 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.866 2.663 15.274 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.114 4.114 3 N -0.213 5.213 4 C -0.101 4.101 5 N -0.165 5.165 6 H 0.255 0.745 7 C -0.113 4.113 8 C -0.108 4.108 9 C 0.289 3.711 10 O -0.400 6.400 11 N -0.341 5.341 12 C -0.016 4.016 13 C -0.173 4.173 14 C -0.148 4.148 15 C 0.021 3.979 16 H 0.045 0.955 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.007 4.007 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.222 0.778 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.672 4.084 14.650 15.223 hybrid contribution 0.677 -1.495 -0.970 1.906 sum 1.349 2.589 13.680 13.988 Atomic orbital electron populations 1.20012 0.87986 1.02957 1.01452 1.20365 0.96292 0.87796 1.06955 1.70123 1.00578 1.30737 1.19885 1.24786 0.97289 0.81899 1.06150 1.43103 1.08009 1.08669 1.56730 0.74521 1.20276 0.83996 0.95639 1.11357 1.20135 1.03208 0.90410 0.97059 1.20272 0.78303 0.82373 0.90170 1.90757 1.51183 1.51978 1.46113 1.48517 1.65791 1.10091 1.09679 1.21569 1.00014 0.90553 0.89469 1.21878 0.99988 0.96322 0.99087 1.21627 1.00106 0.99563 0.93551 1.18973 0.96090 0.90112 0.92723 0.95511 1.21116 1.42952 1.01404 0.90531 0.92307 1.25057 0.94797 0.94907 0.99270 1.69896 1.43357 1.08984 1.29531 0.86540 0.78179 0.79038 0.84289 1.19761 1.20926 1.21026 1.22285 0.98127 1.01408 0.78902 0.91776 0.91445 0.91209 0.77778 0.88810 0.87215 0.91242 0.91882 0.92141 0.92315 0.93110 0.93045 0.92705 0.94008 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.13 36.01 0.36 -0.55 16 2 C 0.01 0.24 7.09 -82.85 -0.59 -0.35 16 3 N -0.49 -8.04 11.25 -10.87 -0.12 -8.16 16 4 C 0.18 2.35 13.04 -90.38 -1.18 1.17 16 5 N -0.56 -7.10 6.15 -10.29 -0.06 -7.16 16 6 H 0.42 3.97 8.96 -40.82 -0.37 3.60 16 7 C 0.00 0.05 5.73 -81.60 -0.47 -0.42 16 8 C -0.07 -0.90 4.16 -29.03 -0.12 -1.02 16 9 C 0.50 9.57 7.69 -10.99 -0.08 9.48 16 10 O -0.52 -12.70 15.45 5.55 0.09 -12.61 16 11 N -0.61 -11.53 2.98 -173.01 -0.52 -12.05 16 12 C 0.11 1.53 6.31 -3.94 -0.02 1.50 16 13 C -0.13 -2.01 6.06 -26.83 -0.16 -2.17 16 14 C -0.11 -2.12 5.11 -26.69 -0.14 -2.26 16 15 C 0.04 0.97 2.25 -91.63 -0.21 0.76 16 16 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 17 C -0.52 -13.97 8.57 -34.44 -0.29 -14.27 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.88 -25.66 11.39 55.43 0.63 -25.03 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.11 2.68 5.40 -3.69 -0.02 2.66 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.21 1.70 8.06 -52.48 -0.42 1.28 16 30 H 0.09 1.02 7.68 -51.93 -0.40 0.62 16 31 H 0.11 1.19 7.84 -51.93 -0.41 0.78 16 32 H 0.07 0.74 5.94 -51.92 -0.31 0.43 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.12 3.44 5.13 -51.93 -0.27 3.17 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -34.72 325.77 -9.03 -43.75 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.93 Total: 4.00 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.01 Total: -3.82 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.07 Total: -52.39 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.72 -9.03 -43.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.142 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds