Wall clock time and date at job start Mon Mar 30 2020 02:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34125 * 125.98994 * 2 1 4 4 C 1.30500 * 109.25480 * 179.88186 * 3 2 1 5 5 N 1.35042 * 108.70247 * 0.38540 * 4 3 2 6 6 H 0.97000 * 126.40122 * 179.76374 * 5 4 3 7 7 C 1.34666 * 125.98978 * 180.31680 * 2 1 3 8 8 C 1.50709 * 126.59004 * 359.93540 * 7 2 1 9 9 C 1.50693 * 109.46745 * 85.00636 * 8 7 2 10 10 O 1.21284 * 120.00596 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00038 * 180.02562 * 9 8 7 12 12 C 1.46928 * 120.63055 * 359.71532 * 11 9 8 13 13 C 1.52753 * 109.01354 * 233.58913 * 12 11 9 14 14 C 1.53047 * 109.37973 * 305.58793 * 13 12 11 15 15 C 1.53041 * 109.53922 * 61.24115 * 14 13 12 16 16 H 1.08999 * 109.49769 * 58.58295 * 15 14 13 17 17 C 1.50704 * 109.52310 * 178.66949 * 15 14 13 18 18 H 1.08005 * 119.99952 * 359.84690 * 17 15 14 19 19 C 1.37875 * 120.00005 * 179.85285 * 17 15 14 20 20 N 1.31519 * 119.99859 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 120.00147 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46920 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47026 * 119.99784 * 21 19 17 24 24 H 1.48502 * 109.47166 * 239.99997 * 21 19 17 25 25 C 1.46926 * 120.63473 * 179.97438 * 11 9 8 26 26 H 1.09002 * 109.47152 * 269.68681 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.68781 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.68762 * 1 2 3 29 29 H 1.08005 * 125.65047 * 180.14544 * 4 3 2 30 30 H 1.09005 * 109.46664 * 205.00349 * 8 7 2 31 31 H 1.09000 * 109.46880 * 325.00363 * 8 7 2 32 32 H 1.09008 * 109.58275 * 353.42350 * 12 11 9 33 33 H 1.09003 * 109.58511 * 113.84568 * 12 11 9 34 34 H 1.09000 * 109.57134 * 185.55370 * 13 12 11 35 35 H 1.09005 * 109.36242 * 65.49318 * 13 12 11 36 36 H 1.09003 * 109.45869 * 301.21652 * 14 13 12 37 37 H 1.09006 * 109.44561 * 181.25452 * 14 13 12 38 38 H 0.96993 * 120.00121 * 180.02562 * 20 19 17 39 39 H 1.08996 * 109.58646 * 246.15430 * 25 11 9 40 40 H 1.08994 * 109.58519 * 6.43617 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 0.0025 5 7 3.5913 -0.6401 -0.0044 6 1 4.3914 -1.1886 -0.0076 7 6 2.2984 -1.0896 -0.0060 8 6 1.8472 -2.5275 -0.0126 9 6 1.5776 -2.9628 -1.4299 10 8 1.7356 -2.1822 -2.3446 11 7 1.1597 -4.2193 -1.6810 12 6 0.9685 -5.1779 -0.5841 13 6 1.7652 -6.4456 -0.8865 14 6 1.3669 -6.9792 -2.2645 15 6 1.6956 -5.9337 -3.3327 16 1 2.7612 -5.7061 -3.3033 17 6 1.3335 -6.4723 -4.6929 18 1 0.9132 -7.4628 -4.7871 19 6 1.5389 -5.7008 -5.8169 20 7 2.0503 -4.4946 -5.7021 21 14 1.0907 -6.3686 -7.5028 22 1 0.5378 -7.7396 -7.3612 23 1 0.0741 -5.4867 -8.1303 24 1 2.3046 -6.4108 -8.3572 25 6 0.8921 -4.6583 -3.0574 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5187 28 1 -0.3633 0.8928 -0.5090 29 1 4.4005 1.3687 0.0054 30 1 2.6275 -3.1551 0.4180 31 1 0.9357 -2.6250 0.5771 32 1 1.3217 -4.7400 0.3496 33 1 -0.0892 -5.4266 -0.4964 34 1 1.5525 -7.2000 -0.1289 35 1 2.8302 -6.2133 -0.8802 36 1 0.2972 -7.1881 -2.2778 37 1 1.9186 -7.8962 -2.4719 38 1 2.1944 -3.9516 -6.4928 39 1 -0.1718 -4.8638 -3.1751 40 1 1.1926 -3.8767 -3.7551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:58 Heat of formation + Delta-G solvation = -14.714084 kcal Electronic energy + Delta-G solvation = -21980.484319 eV Core-core repulsion = 18794.520677 eV Total energy + Delta-G solvation = -3185.963641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.01830 -40.85881 -38.30983 -35.33352 -34.01363 -33.80546 -33.23392 -31.56402 -29.87225 -27.33879 -26.74943 -25.58235 -23.41475 -22.65735 -21.61590 -20.60372 -19.69936 -18.64872 -18.50848 -17.83786 -16.74651 -16.41089 -16.39117 -15.86637 -15.39732 -15.15597 -14.78642 -14.62528 -14.26159 -14.03298 -13.89569 -13.68722 -13.62253 -13.47644 -13.06469 -12.98831 -12.93074 -12.64708 -12.27863 -12.21317 -11.77344 -11.61905 -11.10393 -10.96012 -10.91627 -10.82993 -10.59740 -10.49935 -9.36235 -9.12408 -8.12942 -6.29764 1.05028 1.37417 1.39515 1.51095 1.78750 2.12328 2.27482 2.38592 2.47217 3.15937 3.63023 3.78926 3.93570 4.06667 4.16270 4.23023 4.38426 4.41694 4.46751 4.51043 4.64193 4.80158 4.84517 4.85882 4.91556 5.03707 5.08606 5.13124 5.27581 5.27754 5.31236 5.38990 5.55112 5.67360 5.84310 5.90878 6.01038 6.33059 6.59312 6.74205 6.84054 7.15935 7.38946 7.42983 8.90071 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.004849 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.161112 B = 5773.019964 C = 6493.513226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.014 4.014 3 N -0.536 5.536 4 C 0.190 3.810 5 N -0.557 5.557 6 H 0.432 0.568 7 C -0.013 4.013 8 C -0.051 4.051 9 C 0.496 3.504 10 O -0.589 6.589 11 N -0.610 5.610 12 C 0.100 3.900 13 C -0.127 4.127 14 C -0.107 4.107 15 C 0.039 3.961 16 H -0.015 1.015 17 C -0.535 4.535 18 H 0.061 0.939 19 C 0.009 3.991 20 N -0.916 5.916 21 Si 0.955 3.045 22 H -0.259 1.259 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.126 3.874 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.246 0.754 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.258 0.742 39 H 0.033 0.967 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.835 1.274 17.951 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.142 4.142 3 N -0.257 5.257 4 C -0.094 4.094 5 N -0.161 5.161 6 H 0.272 0.728 7 C -0.130 4.130 8 C -0.091 4.091 9 C 0.285 3.715 10 O -0.469 6.469 11 N -0.342 5.342 12 C -0.021 4.021 13 C -0.165 4.165 14 C -0.144 4.144 15 C 0.020 3.980 16 H 0.004 0.996 17 C -0.573 4.573 18 H 0.079 0.921 19 C -0.190 4.190 20 N -0.555 5.555 21 Si 0.781 3.219 22 H -0.183 1.183 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.003 3.997 26 H 0.109 0.891 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.261 0.739 30 H 0.148 0.852 31 H 0.162 0.838 32 H 0.136 0.864 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.643 2.634 17.377 17.587 hybrid contribution 0.722 -1.046 -1.808 2.210 sum 1.365 1.589 15.569 15.709 Atomic orbital electron populations 1.20024 0.87302 1.02000 1.02840 1.20810 0.97337 0.88458 1.07604 1.70104 1.02113 1.31627 1.21855 1.25612 0.97566 0.82512 1.03716 1.43142 1.08064 1.08867 1.56013 0.72840 1.20482 0.84700 0.96072 1.11712 1.20144 1.05927 0.90032 0.92999 1.21298 0.76645 0.81494 0.92059 1.90731 1.53770 1.53722 1.48711 1.48530 1.65404 1.11334 1.08963 1.21995 1.01374 0.89345 0.89380 1.21852 0.99703 0.97707 0.97267 1.21525 1.00423 0.97847 0.94648 1.18906 0.93467 0.91942 0.93727 0.99645 1.21586 1.42131 1.01420 0.92212 0.92053 1.25881 0.94894 0.95039 1.03159 1.70100 1.44987 1.10356 1.30013 0.85542 0.77751 0.78871 0.79747 1.18290 1.20997 1.20895 1.21631 0.97060 0.99608 0.81375 0.89130 0.92212 0.92305 0.73856 0.85178 0.83831 0.86361 0.90114 0.87644 0.92894 0.92574 0.93225 0.93319 0.94897 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.73 10.13 71.24 0.72 -1.01 16 2 C -0.01 -0.43 7.09 41.39 0.29 -0.14 16 3 N -0.54 -17.16 11.25 -188.31 -2.12 -19.28 16 4 C 0.19 4.60 13.04 180.26 2.35 6.95 16 5 N -0.56 -13.03 6.15 -186.48 -1.15 -14.18 16 6 H 0.43 7.24 8.96 -92.71 -0.83 6.41 16 7 C -0.01 -0.38 5.73 40.95 0.23 -0.14 16 8 C -0.05 -1.20 4.16 29.10 0.12 -1.08 16 9 C 0.50 18.61 7.69 87.65 0.67 19.28 16 10 O -0.59 -29.65 15.45 -3.04 -0.05 -29.70 16 11 N -0.61 -22.64 2.98 -819.66 -2.44 -25.08 16 12 C 0.10 2.44 6.31 86.22 0.54 2.98 16 13 C -0.13 -3.33 6.06 30.53 0.19 -3.14 16 14 C -0.11 -3.93 5.11 30.62 0.16 -3.77 16 15 C 0.04 1.92 2.25 -11.45 -0.03 1.90 16 16 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 17 C -0.53 -29.37 8.57 25.60 0.22 -29.15 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 19 C 0.01 0.53 5.30 84.65 0.45 0.98 16 20 N -0.92 -56.14 11.39 21.45 0.24 -55.90 16 21 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 25 C 0.13 6.18 5.40 86.38 0.47 6.65 16 26 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 1.66 7.89 -2.39 -0.02 1.65 16 28 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.25 3.43 8.06 -2.91 -0.02 3.40 16 30 H 0.13 2.16 7.68 -2.38 -0.02 2.14 16 31 H 0.14 2.45 7.84 -2.39 -0.02 2.43 16 32 H 0.12 1.78 5.94 -2.38 -0.01 1.76 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.46 8.14 -2.38 -0.02 1.45 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.07 4.32 5.13 -2.39 -0.01 4.31 16 Total: -1.00 -82.92 325.77 3.12 -79.79 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.22 Total: 17.50 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 6.39 Total: 0.30 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -5.46 Total: -114.44 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.05 Total: -29.70 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -82.92 3.12 -79.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.080 kcal (2) G-P(sol) polarization free energy of solvation -82.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds