Wall clock time and date at job start Mon Mar 30 2020 02:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30859 * 125.41752 * 2 1 4 4 C 1.33326 * 109.68037 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.10155 * 179.97438 * 4 3 2 6 6 C 1.36658 * 107.78915 * 359.97438 * 4 3 2 7 7 C 1.46760 * 126.84180 * 179.97438 * 6 4 3 8 8 O 1.21684 * 120.00439 * 352.09413 * 7 6 4 9 9 N 1.34784 * 119.99996 * 172.10048 * 7 6 4 10 10 C 1.46500 * 119.99857 * 0.34480 * 9 7 6 11 11 C 1.50699 * 109.47164 * 82.50117 * 10 9 7 12 12 H 1.08000 * 120.00160 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99899 * 180.02562 * 13 11 10 15 15 Si 1.86792 * 119.99938 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47404 * 90.00231 * 15 13 11 17 17 H 1.48504 * 109.47118 * 210.00215 * 15 13 11 18 18 H 1.48501 * 109.47108 * 329.99738 * 15 13 11 19 19 C 1.46497 * 120.00302 * 180.34376 * 9 7 6 20 20 C 1.52999 * 109.47017 * 94.94447 * 19 9 7 21 21 C 1.52996 * 117.50007 * 247.48633 * 20 19 9 22 22 C 1.53000 * 117.49822 * 178.82590 * 20 19 9 23 23 N 1.34494 * 125.41863 * 180.02562 * 2 1 3 24 24 H 0.97001 * 126.47235 * 0.25291 * 23 2 1 25 25 H 1.08997 * 109.46930 * 269.98224 * 1 2 3 26 26 H 1.09004 * 109.46725 * 29.98256 * 1 2 3 27 27 H 1.08999 * 109.46705 * 149.97690 * 1 2 3 28 28 H 1.09003 * 109.46900 * 270.00143 * 5 4 3 29 29 H 1.09001 * 109.46952 * 29.99850 * 5 4 3 30 30 H 1.08996 * 109.47117 * 150.00238 * 5 4 3 31 31 H 1.08994 * 109.47429 * 202.50588 * 10 9 7 32 32 H 1.09003 * 109.46937 * 322.50598 * 10 9 7 33 33 H 0.96999 * 119.99958 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.47423 * 214.94686 * 19 9 7 35 35 H 1.09007 * 109.47068 * 334.95029 * 19 9 7 36 36 H 1.08998 * 115.54936 * 33.16071 * 20 19 9 37 37 H 1.08998 * 117.50177 * 0.02562 * 21 20 19 38 38 H 1.08997 * 117.49476 * 145.02135 * 21 20 19 39 39 H 1.08999 * 117.49910 * 214.98280 * 22 20 19 40 40 H 1.09000 * 117.49707 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7048 -0.0006 5 6 4.7336 1.6360 -0.0013 6 6 3.5976 -0.6609 -0.0004 7 6 4.8029 -1.4982 -0.0013 8 8 5.8980 -0.9883 -0.1474 9 7 4.6968 -2.8322 0.1595 10 6 3.3777 -3.4472 0.3276 11 6 2.7426 -3.6510 -1.0237 12 1 3.2686 -3.3521 -1.9183 13 6 1.4894 -4.2183 -1.1179 14 7 0.9353 -4.3967 -2.2972 15 14 0.5787 -4.7335 0.4294 16 1 -0.2442 -3.5990 0.9205 17 1 -0.3031 -5.8885 0.1235 18 1 1.5593 -5.1226 1.4746 19 6 5.9004 -3.6673 0.1660 20 6 6.3546 -3.8960 1.6091 21 6 7.6766 -3.2596 2.0429 22 6 7.5885 -4.7730 1.8308 23 7 2.2865 -1.0960 -0.0005 24 1 1.9850 -2.0180 -0.0043 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 5.0188 1.8603 -1.0292 29 1 4.4696 2.5604 0.5125 30 1 5.5694 1.1608 0.5122 31 1 3.4866 -4.4099 0.8269 32 1 2.7468 -2.7943 0.9308 33 1 0.0536 -4.7954 -2.3635 34 1 5.6796 -4.6268 -0.3017 35 1 6.6934 -3.1662 -0.3893 36 1 5.5568 -3.9533 2.3495 37 1 8.2226 -2.6777 1.3004 38 1 7.7486 -2.8986 3.0688 39 1 7.6026 -5.4071 2.7172 40 1 8.0769 -5.1868 0.9485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598692635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:46 Heat of formation + Delta-G solvation = 53.486003 kcal Electronic energy + Delta-G solvation = -22444.187408 eV Core-core repulsion = 19261.181145 eV Total energy + Delta-G solvation = -3183.006263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.71463 -39.00180 -36.97612 -35.39634 -32.87348 -32.56125 -31.57659 -28.91717 -28.49644 -27.31596 -25.07203 -22.92842 -22.19511 -21.30406 -20.59933 -19.89505 -18.66174 -17.40845 -16.79792 -16.04444 -15.63921 -15.24140 -14.76722 -14.51034 -14.28844 -13.54026 -13.47843 -13.21676 -12.87639 -12.69336 -12.60623 -12.25909 -12.05910 -11.92281 -11.87493 -11.57067 -11.46494 -11.37361 -11.11994 -11.02283 -10.59928 -10.28294 -9.95029 -9.75911 -9.72565 -9.33444 -9.19994 -9.06194 -8.08864 -7.63202 -6.58302 -4.64989 1.99310 2.84405 2.97714 3.00048 3.35490 3.50855 3.80791 3.88835 4.00298 4.06844 4.68138 4.79148 4.94611 5.09952 5.17155 5.33177 5.49485 5.62309 5.63693 5.74844 5.77208 5.81028 5.96925 6.02639 6.04462 6.06665 6.13966 6.21214 6.26794 6.30122 6.40111 6.45750 6.47672 6.67528 6.99738 7.13532 7.21878 7.85134 8.03882 8.09304 8.51528 8.54541 8.78537 8.94979 10.52544 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.009217 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.107559 B = 3037.099769 C = 4817.855263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.214 3.786 3 N -0.505 5.505 4 C 0.071 3.929 5 C -0.064 4.064 6 C -0.074 4.074 7 C 0.600 3.400 8 O -0.549 6.549 9 N -0.589 5.589 10 C 0.194 3.806 11 C -0.562 4.562 12 H 0.087 0.913 13 C 0.078 3.922 14 N -0.866 5.866 15 Si 0.848 3.152 16 H -0.266 1.266 17 H -0.271 1.271 18 H -0.257 1.257 19 C 0.151 3.849 20 C -0.166 4.166 21 C -0.173 4.173 22 C -0.178 4.178 23 N -0.524 5.524 24 H 0.442 0.558 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.021 0.979 33 H 0.273 0.727 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.527 1.931 7.645 8.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.050 4.050 3 N -0.227 5.227 4 C -0.065 4.065 5 C -0.122 4.122 6 C -0.192 4.192 7 C 0.389 3.611 8 O -0.429 6.429 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.600 4.600 12 H 0.105 0.895 13 C -0.129 4.129 14 N -0.501 5.501 15 Si 0.673 3.327 16 H -0.191 1.191 17 H -0.195 1.195 18 H -0.181 1.181 19 C 0.028 3.972 20 C -0.185 4.185 21 C -0.210 4.210 22 C -0.216 4.216 23 N -0.140 5.140 24 H 0.298 0.702 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.612 2.806 7.450 8.742 hybrid contribution -0.729 -1.868 0.630 2.102 sum 2.883 0.938 8.080 8.630 Atomic orbital electron populations 1.20221 0.85229 1.04302 1.03228 1.23234 0.95706 0.82597 1.03512 1.69923 1.01481 1.28845 1.22487 1.20895 0.93072 0.90287 1.02256 1.20108 0.93139 0.96585 1.02388 1.20758 0.84668 0.94710 1.19045 1.16840 0.86728 0.81374 0.76115 1.90702 1.26703 1.73198 1.52247 1.47668 1.07873 1.05705 1.70652 1.20101 0.80589 0.94368 0.97803 1.21524 1.02673 1.43140 0.92683 0.89481 1.24981 0.97203 0.94521 0.96160 1.69863 1.16361 1.40985 1.22910 0.87259 0.81128 0.80432 0.83915 1.19103 1.19531 1.18135 1.20916 0.87567 0.95320 0.93448 1.22775 0.91837 1.04766 0.99163 1.22986 1.00733 0.95049 1.02227 1.22915 1.02009 0.93621 1.03048 1.44979 1.05534 1.12222 1.51292 0.70160 0.90409 0.89175 0.90401 0.91385 0.91900 0.90038 0.93504 0.96180 0.91625 0.89920 0.89819 0.88053 0.88422 0.89408 0.89110 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.51 36.01 0.38 -0.70 16 2 C 0.21 4.21 8.12 -155.61 -1.26 2.95 16 3 N -0.51 -10.37 11.20 -6.84 -0.08 -10.45 16 4 C 0.07 1.47 7.14 -82.51 -0.59 0.88 16 5 C -0.06 -1.11 9.81 36.01 0.35 -0.76 16 6 C -0.07 -1.61 6.62 -82.15 -0.54 -2.15 16 7 C 0.60 13.12 7.58 -12.81 -0.10 13.02 16 8 O -0.55 -12.22 14.44 5.20 0.08 -12.15 16 9 N -0.59 -12.12 2.48 -176.57 -0.44 -12.55 16 10 C 0.19 4.15 3.84 -5.19 -0.02 4.13 16 11 C -0.56 -13.86 7.89 -34.44 -0.27 -14.14 16 12 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 13 C 0.08 1.94 5.18 -17.82 -0.09 1.85 16 14 N -0.87 -23.13 13.96 55.43 0.77 -22.36 16 15 Si 0.85 17.61 26.97 -169.99 -4.58 13.03 16 16 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.26 -5.11 6.54 56.52 0.37 -4.74 16 19 C 0.15 2.64 5.71 -4.04 -0.02 2.62 16 20 C -0.17 -2.51 6.01 -90.62 -0.54 -3.05 16 21 C -0.17 -2.34 10.18 -26.70 -0.27 -2.61 16 22 C -0.18 -2.18 10.25 -26.69 -0.27 -2.45 16 23 N -0.52 -11.22 4.83 -7.02 -0.03 -11.25 16 24 H 0.44 9.64 3.00 -40.82 -0.12 9.52 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.43 6.67 -51.93 -0.35 1.08 16 31 H 0.05 0.97 7.08 -51.93 -0.37 0.60 16 32 H 0.02 0.44 4.63 -51.93 -0.24 0.20 16 33 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 35 H 0.08 1.49 7.02 -51.92 -0.36 1.13 16 36 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.10 1.37 8.04 -51.93 -0.42 0.95 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -28.39 327.66 -8.28 -36.67 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.67 Total: 14.53 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -3.26 Total: -0.41 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.23 Total: -56.61 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -4.58 Total: 13.03 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.39 -8.28 -36.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598692635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.160 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds