Wall clock time and date at job start Mon Mar 30 2020 02:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30859 * 125.41752 * 2 1 4 4 C 1.33326 * 109.68037 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.10155 * 179.97438 * 4 3 2 6 6 C 1.36658 * 107.78915 * 359.97438 * 4 3 2 7 7 C 1.46760 * 126.84180 * 179.97438 * 6 4 3 8 8 O 1.21684 * 120.00439 * 352.09413 * 7 6 4 9 9 N 1.34784 * 119.99996 * 172.10048 * 7 6 4 10 10 C 1.46500 * 119.99857 * 0.34480 * 9 7 6 11 11 C 1.50699 * 109.47164 * 82.50117 * 10 9 7 12 12 H 1.08000 * 120.00160 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99899 * 180.02562 * 13 11 10 15 15 Si 1.86792 * 119.99938 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47404 * 90.00231 * 15 13 11 17 17 H 1.48504 * 109.47118 * 210.00215 * 15 13 11 18 18 H 1.48501 * 109.47108 * 329.99738 * 15 13 11 19 19 C 1.46497 * 120.00302 * 180.34376 * 9 7 6 20 20 C 1.52999 * 109.47017 * 94.94447 * 19 9 7 21 21 C 1.52996 * 117.50007 * 247.48633 * 20 19 9 22 22 C 1.53000 * 117.49822 * 178.82590 * 20 19 9 23 23 N 1.34494 * 125.41863 * 180.02562 * 2 1 3 24 24 H 0.97001 * 126.47235 * 0.25291 * 23 2 1 25 25 H 1.08997 * 109.46930 * 269.98224 * 1 2 3 26 26 H 1.09004 * 109.46725 * 29.98256 * 1 2 3 27 27 H 1.08999 * 109.46705 * 149.97690 * 1 2 3 28 28 H 1.09003 * 109.46900 * 270.00143 * 5 4 3 29 29 H 1.09001 * 109.46952 * 29.99850 * 5 4 3 30 30 H 1.08996 * 109.47117 * 150.00238 * 5 4 3 31 31 H 1.08994 * 109.47429 * 202.50588 * 10 9 7 32 32 H 1.09003 * 109.46937 * 322.50598 * 10 9 7 33 33 H 0.96999 * 119.99958 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.47423 * 214.94686 * 19 9 7 35 35 H 1.09007 * 109.47068 * 334.95029 * 19 9 7 36 36 H 1.08998 * 115.54936 * 33.16071 * 20 19 9 37 37 H 1.08998 * 117.50177 * 0.02562 * 21 20 19 38 38 H 1.08997 * 117.49476 * 145.02135 * 21 20 19 39 39 H 1.08999 * 117.49910 * 214.98280 * 22 20 19 40 40 H 1.09000 * 117.49707 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7048 -0.0006 5 6 4.7336 1.6360 -0.0013 6 6 3.5976 -0.6609 -0.0004 7 6 4.8029 -1.4982 -0.0013 8 8 5.8980 -0.9883 -0.1474 9 7 4.6968 -2.8322 0.1595 10 6 3.3777 -3.4472 0.3276 11 6 2.7426 -3.6510 -1.0237 12 1 3.2686 -3.3521 -1.9183 13 6 1.4894 -4.2183 -1.1179 14 7 0.9353 -4.3967 -2.2972 15 14 0.5787 -4.7335 0.4294 16 1 -0.2442 -3.5990 0.9205 17 1 -0.3031 -5.8885 0.1235 18 1 1.5593 -5.1226 1.4746 19 6 5.9004 -3.6673 0.1660 20 6 6.3546 -3.8960 1.6091 21 6 7.6766 -3.2596 2.0429 22 6 7.5885 -4.7730 1.8308 23 7 2.2865 -1.0960 -0.0005 24 1 1.9850 -2.0180 -0.0043 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 5.0188 1.8603 -1.0292 29 1 4.4696 2.5604 0.5125 30 1 5.5694 1.1608 0.5122 31 1 3.4866 -4.4099 0.8269 32 1 2.7468 -2.7943 0.9308 33 1 0.0536 -4.7954 -2.3635 34 1 5.6796 -4.6268 -0.3017 35 1 6.6934 -3.1662 -0.3893 36 1 5.5568 -3.9533 2.3495 37 1 8.2226 -2.6777 1.3004 38 1 7.7486 -2.8986 3.0688 39 1 7.6026 -5.4071 2.7172 40 1 8.0769 -5.1868 0.9485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598692635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:45 Heat of formation + Delta-G solvation = 37.683236 kcal Electronic energy + Delta-G solvation = -22444.872668 eV Core-core repulsion = 19261.181145 eV Total energy + Delta-G solvation = -3183.691523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.29683 -40.58131 -38.25853 -37.01804 -34.70200 -34.11374 -33.06426 -30.55406 -29.96439 -28.81974 -26.58303 -24.72691 -23.22135 -22.73612 -22.14519 -21.27177 -20.25691 -19.29903 -18.41757 -17.54115 -17.23737 -16.84122 -16.31303 -15.95989 -15.68990 -15.01165 -14.95571 -14.73855 -14.53308 -14.10388 -14.01938 -13.69147 -13.53900 -13.34025 -13.22672 -13.03185 -12.95060 -12.66258 -12.54436 -12.34683 -12.22049 -11.90393 -11.42441 -11.30128 -11.05936 -10.94978 -10.81284 -10.76853 -9.73148 -9.21604 -8.49451 -6.63050 0.36916 1.23673 1.30664 1.38814 1.78301 1.96499 2.14260 2.24755 2.37713 2.80370 2.93039 3.35743 3.66627 3.80849 3.98850 4.04385 4.11682 4.16820 4.29064 4.37808 4.51913 4.54275 4.66077 4.66622 4.75760 4.80861 4.83627 4.89066 4.96789 5.01256 5.08827 5.14648 5.16774 5.23255 5.27277 5.54952 5.68675 5.98757 6.35078 6.44021 6.49874 6.92952 7.00316 7.14569 8.65424 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.009217 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.107559 B = 3037.099769 C = 4817.855263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.215 3.785 3 N -0.517 5.517 4 C 0.067 3.933 5 C -0.060 4.060 6 C -0.108 4.108 7 C 0.592 3.408 8 O -0.563 6.563 9 N -0.592 5.592 10 C 0.203 3.797 11 C -0.561 4.561 12 H 0.033 0.967 13 C 0.035 3.965 14 N -0.915 5.915 15 Si 0.907 3.093 16 H -0.242 1.242 17 H -0.271 1.271 18 H -0.239 1.239 19 C 0.148 3.852 20 C -0.186 4.186 21 C -0.174 4.174 22 C -0.152 4.152 23 N -0.537 5.537 24 H 0.439 0.561 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.029 0.971 33 H 0.277 0.723 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 1.777 9.976 10.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.049 4.049 3 N -0.239 5.239 4 C -0.069 4.069 5 C -0.117 4.117 6 C -0.225 4.225 7 C 0.382 3.618 8 O -0.443 6.443 9 N -0.321 5.321 10 C 0.081 3.919 11 C -0.600 4.600 12 H 0.051 0.949 13 C -0.168 4.168 14 N -0.551 5.551 15 Si 0.727 3.273 16 H -0.166 1.166 17 H -0.196 1.196 18 H -0.162 1.162 19 C 0.026 3.974 20 C -0.205 4.205 21 C -0.211 4.211 22 C -0.189 4.189 23 N -0.153 5.153 24 H 0.294 0.706 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.131 0.869 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.095 2.658 9.789 10.606 hybrid contribution -0.534 -1.768 -0.205 1.858 sum 2.562 0.891 9.584 9.960 Atomic orbital electron populations 1.20468 0.82035 1.05152 1.05393 1.24206 0.97519 0.81896 1.01317 1.69989 1.01448 1.29079 1.23377 1.21464 0.94108 0.90468 1.00882 1.20152 0.91807 0.96836 1.02954 1.20968 0.85020 0.95445 1.21116 1.17003 0.86810 0.81858 0.76147 1.90671 1.27077 1.73488 1.53106 1.47753 1.08462 1.05667 1.70217 1.19947 0.80943 0.95088 0.95968 1.21418 1.02897 1.43316 0.92321 0.94898 1.25745 0.97689 0.93955 0.99443 1.70005 1.17110 1.42331 1.25699 0.86310 0.80274 0.80704 0.79991 1.16597 1.19579 1.16218 1.21039 0.86309 0.94529 0.95522 1.22617 0.92823 1.07960 0.97096 1.23021 0.99208 0.96285 1.02562 1.23035 0.98732 0.92980 1.04161 1.44992 1.05668 1.12407 1.52197 0.70611 0.87469 0.87249 0.90580 0.90855 0.89600 0.90504 0.92115 0.95325 0.91331 0.90020 0.90718 0.88338 0.89400 0.88175 0.86889 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.00 10.51 71.24 0.75 -1.25 16 2 C 0.22 8.22 8.12 138.20 1.12 9.34 16 3 N -0.52 -20.66 11.20 -175.56 -1.97 -22.63 16 4 C 0.07 2.75 7.14 41.96 0.30 3.05 16 5 C -0.06 -2.03 9.81 71.24 0.70 -1.33 16 6 C -0.11 -4.79 6.62 40.01 0.26 -4.53 16 7 C 0.59 26.43 7.58 86.47 0.66 27.08 16 8 O -0.56 -25.59 14.44 -4.30 -0.06 -25.66 16 9 N -0.59 -24.70 2.48 -830.78 -2.06 -26.76 16 10 C 0.20 8.66 3.84 85.63 0.33 8.99 16 11 C -0.56 -28.39 7.89 25.60 0.20 -28.19 16 12 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 13 C 0.03 1.73 5.18 84.66 0.44 2.17 16 14 N -0.92 -49.94 13.96 21.45 0.30 -49.64 16 15 Si 0.91 34.97 26.97 68.60 1.85 36.82 16 16 H -0.24 -8.42 7.11 99.48 0.71 -7.71 16 17 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 18 H -0.24 -8.48 6.54 99.48 0.65 -7.83 16 19 C 0.15 5.25 5.71 86.38 0.49 5.75 16 20 C -0.19 -5.39 6.01 -10.80 -0.06 -5.46 16 21 C -0.17 -4.43 10.18 30.62 0.31 -4.12 16 22 C -0.15 -3.33 10.25 30.62 0.31 -3.01 16 23 N -0.54 -22.87 4.83 -176.12 -0.85 -23.72 16 24 H 0.44 19.01 3.00 -92.71 -0.28 18.73 16 25 H 0.11 2.36 8.14 -2.39 -0.02 2.35 16 26 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.08 2.67 6.67 -2.39 -0.02 2.65 16 31 H 0.06 2.42 7.08 -2.39 -0.02 2.40 16 32 H 0.03 1.21 4.63 -2.39 -0.01 1.20 16 33 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 34 H 0.08 2.84 8.11 -2.39 -0.02 2.82 16 35 H 0.07 2.74 7.02 -2.38 -0.02 2.72 16 36 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.09 2.41 8.04 -2.39 -0.02 2.39 16 38 H 0.10 2.29 8.14 -2.39 -0.02 2.28 16 39 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.10 2.09 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -62.92 327.66 3.74 -59.19 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: 0.72 Total: 43.92 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 5.81 Total: 8.48 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -4.58 Total: -122.75 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.06 Total: -25.66 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 1.85 Total: 36.82 kcal Total: -62.92 3.74 -59.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598692635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.869 kcal (2) G-P(sol) polarization free energy of solvation -62.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds