Wall clock time and date at job start Mon Mar 30 2020 02:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30865 * 125.41677 * 2 1 4 4 C 1.33314 * 109.68524 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.10467 * 179.97438 * 4 3 2 6 6 C 1.36666 * 107.78764 * 359.73673 * 4 3 2 7 7 C 1.46758 * 126.84376 * 180.30130 * 6 4 3 8 8 O 1.21682 * 120.00380 * 103.55975 * 7 6 4 9 9 N 1.34779 * 120.00218 * 283.55343 * 7 6 4 10 10 C 1.46924 * 120.62668 * 4.65552 * 9 7 6 11 11 C 1.52763 * 109.00773 * 233.58283 * 10 9 7 12 12 C 1.53039 * 109.38177 * 305.58649 * 11 10 9 13 13 C 1.50700 * 109.46381 * 181.26313 * 12 11 10 14 14 H 1.07996 * 120.00156 * 239.93668 * 13 12 11 15 15 C 1.37875 * 119.99968 * 59.92843 * 13 12 11 16 16 N 1.31514 * 120.00435 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99955 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47381 * 60.00262 * 17 15 13 19 19 H 1.48498 * 109.47175 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47221 * 300.00263 * 17 15 13 21 21 C 1.53035 * 109.53869 * 61.23886 * 12 11 10 22 22 C 1.46924 * 120.63570 * 184.92999 * 9 7 6 23 23 N 1.34491 * 125.42325 * 180.02562 * 2 1 3 24 24 H 0.96998 * 126.47359 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.47037 * 269.97088 * 1 2 3 26 26 H 1.09001 * 109.47762 * 29.97415 * 1 2 3 27 27 H 1.09005 * 109.46867 * 149.97243 * 1 2 3 28 28 H 1.09010 * 109.46723 * 89.97940 * 5 4 3 29 29 H 1.09001 * 109.47306 * 209.97476 * 5 4 3 30 30 H 1.09000 * 109.47185 * 329.98057 * 5 4 3 31 31 H 1.09002 * 109.58958 * 353.41330 * 10 9 7 32 32 H 1.09003 * 109.58880 * 113.84127 * 10 9 7 33 33 H 1.09004 * 109.56732 * 185.55746 * 11 10 9 34 34 H 1.08996 * 109.36388 * 65.49934 * 11 10 9 35 35 H 1.09001 * 109.46140 * 301.22110 * 12 11 10 36 36 H 0.96996 * 120.00381 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.50225 * 178.68029 * 21 12 11 38 38 H 1.09003 * 109.49817 * 58.58570 * 21 12 11 39 39 H 1.08994 * 109.58782 * 246.15773 * 22 9 7 40 40 H 1.09007 * 109.58124 * 6.44535 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7050 -0.0006 5 6 4.7335 1.6363 -0.0013 6 6 3.5976 -0.6607 0.0050 7 6 4.8029 -1.4980 0.0128 8 8 5.1579 -2.0440 1.0406 9 7 5.5166 -1.6624 -1.1187 10 6 5.1600 -0.9302 -2.3416 11 6 4.9879 -1.9272 -3.4861 12 6 6.2520 -2.7810 -3.6103 13 6 6.0964 -3.7443 -4.7587 14 1 6.1478 -4.8084 -4.5817 15 6 5.8885 -3.2671 -6.0354 16 7 5.8263 -1.9713 -6.2512 17 14 5.6950 -4.4612 -7.4588 18 1 4.5258 -5.3424 -7.2104 19 1 5.4842 -3.7014 -8.7172 20 1 6.9217 -5.2891 -7.5807 21 6 6.4699 -3.5642 -2.3138 22 6 6.6622 -2.5816 -1.1544 23 7 2.2865 -1.0960 -0.0005 24 1 1.9851 -2.0179 -0.0006 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3635 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5143 28 1 5.0194 1.8612 1.0263 29 1 5.5690 1.1608 -0.5151 30 1 4.4691 2.5603 -0.5155 31 1 4.2258 -0.3907 -2.1853 32 1 5.9538 -0.2259 -2.5904 33 1 4.8205 -1.3876 -4.4183 34 1 4.1330 -2.5709 -3.2792 35 1 7.1104 -2.1345 -3.7926 36 1 5.6803 -1.6356 -7.1494 37 1 7.3572 -4.1898 -2.4113 38 1 5.6010 -4.1925 -2.1178 39 1 7.5810 -2.0147 -1.3044 40 1 6.7203 -3.1296 -0.2139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598694513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:50 Heat of formation + Delta-G solvation = 5.479520 kcal Electronic energy + Delta-G solvation = -22102.246612 eV Core-core repulsion = 18917.158631 eV Total energy + Delta-G solvation = -3185.087981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.21830 -39.43589 -36.85918 -33.70664 -33.34073 -32.26611 -31.15143 -30.19193 -29.17119 -27.04142 -25.71204 -23.19436 -22.42990 -21.39118 -20.93595 -19.70708 -18.70145 -17.44654 -16.69866 -16.20988 -15.65945 -15.24673 -14.72601 -14.58875 -13.79846 -13.63956 -13.30784 -13.12583 -13.04483 -12.81249 -12.72129 -12.58569 -12.43396 -12.33902 -12.06107 -11.70323 -11.35119 -10.97381 -10.72816 -10.46980 -10.39074 -10.14375 -9.92750 -9.76313 -9.59434 -9.25924 -9.03012 -8.44020 -8.22107 -8.10828 -6.08142 -4.14853 1.74172 2.37955 2.93610 3.16678 3.25692 3.31119 3.33558 3.57210 4.26389 4.36182 4.75567 4.90588 5.09220 5.21313 5.29702 5.33279 5.55683 5.65437 5.71777 5.75196 5.84386 5.87672 5.99650 6.02588 6.05144 6.06356 6.26534 6.36448 6.56117 6.64148 6.77611 6.94271 7.03466 7.19487 7.26624 7.58938 7.74799 7.84338 7.97131 7.98510 8.32885 8.33804 8.88272 9.50591 10.97383 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.004996 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.891425 B = 5602.819295 C = 6162.490864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.221 3.779 3 N -0.487 5.487 4 C 0.053 3.947 5 C -0.074 4.074 6 C -0.059 4.059 7 C 0.588 3.412 8 O -0.547 6.547 9 N -0.583 5.583 10 C 0.103 3.897 11 C -0.122 4.122 12 C 0.048 3.952 13 C -0.515 4.515 14 H 0.054 0.946 15 C 0.063 3.937 16 N -0.891 5.891 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.123 4.123 22 C 0.111 3.889 23 N -0.540 5.540 24 H 0.423 0.577 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.035 0.965 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.910 4.306 9.859 12.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.043 4.043 3 N -0.209 5.209 4 C -0.079 4.079 5 C -0.132 4.132 6 C -0.177 4.177 7 C 0.373 3.627 8 O -0.425 6.425 9 N -0.315 5.315 10 C -0.019 4.019 11 C -0.161 4.161 12 C 0.030 3.970 13 C -0.553 4.553 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.161 4.161 22 C -0.010 4.010 23 N -0.143 5.143 24 H 0.261 0.739 25 H 0.100 0.900 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.986 4.963 10.221 13.338 hybrid contribution -0.071 -1.938 -0.947 2.159 sum -7.057 3.025 9.273 12.039 Atomic orbital electron populations 1.20231 0.84434 1.04408 1.03637 1.23243 0.95630 0.81348 1.04055 1.69933 1.01528 1.28287 1.21108 1.20845 0.93288 0.89913 1.03883 1.20161 0.92649 0.97757 1.02601 1.20623 0.84905 0.95227 1.16925 1.16958 0.82179 0.79884 0.83650 1.90790 1.70838 1.49187 1.31667 1.48206 1.30377 1.42617 1.10255 1.22022 1.00066 0.95380 0.84408 1.21943 0.99718 0.97353 0.97072 1.18642 0.93882 0.93987 0.90489 1.21145 1.49360 0.92855 0.91902 0.92753 1.24954 0.95103 0.95089 0.98723 1.69816 1.49815 1.11784 1.21539 0.86676 0.78658 0.81102 0.81673 1.20393 1.21256 1.20256 1.22017 1.01024 0.97403 0.95655 1.21803 0.87067 0.91691 1.00464 1.42977 1.05266 1.10301 1.55800 0.73890 0.90009 0.88816 0.90548 0.91013 0.90994 0.90411 0.91263 0.91531 0.87605 0.94617 0.95263 0.92833 0.91796 0.93060 0.91640 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.51 36.00 0.38 -0.18 16 2 C 0.22 2.86 8.12 -155.61 -1.26 1.60 16 3 N -0.49 -7.55 11.20 -6.84 -0.08 -7.63 16 4 C 0.05 0.84 6.41 -82.51 -0.53 0.32 16 5 C -0.07 -0.99 10.24 36.01 0.37 -0.62 16 6 C -0.06 -0.96 5.25 -82.15 -0.43 -1.40 16 7 C 0.59 10.66 7.18 -12.82 -0.09 10.57 16 8 O -0.55 -11.24 16.54 5.21 0.09 -11.15 16 9 N -0.58 -10.44 2.98 -174.54 -0.52 -10.96 16 10 C 0.10 1.88 5.89 -3.93 -0.02 1.86 16 11 C -0.12 -2.67 5.14 -26.83 -0.14 -2.81 16 12 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 13 C -0.51 -13.42 8.56 -34.44 -0.29 -13.71 16 14 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -24.10 11.31 55.43 0.63 -23.47 16 17 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.12 -2.42 5.30 -26.61 -0.14 -2.57 16 22 C 0.11 1.97 6.42 -3.71 -0.02 1.95 16 23 N -0.54 -7.33 6.19 -7.02 -0.04 -7.37 16 24 H 0.42 4.67 8.96 -40.82 -0.37 4.30 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.07 0.96 7.53 -51.93 -0.39 0.57 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.22 5.80 -51.93 -0.30 0.92 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.11 2.59 6.03 -51.93 -0.31 2.28 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.39 7.03 -51.93 -0.37 1.03 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -30.79 326.42 -8.43 -39.22 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.93 Total: 3.43 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.47 Total: -2.50 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.01 Total: -49.43 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.79 -8.43 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598694513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.695 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds