Wall clock time and date at job start Mon Mar 30 2020 02:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30865 * 125.41677 * 2 1 4 4 C 1.33314 * 109.68524 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.10467 * 179.97438 * 4 3 2 6 6 C 1.36666 * 107.78764 * 359.73673 * 4 3 2 7 7 C 1.46758 * 126.84376 * 180.30130 * 6 4 3 8 8 O 1.21682 * 120.00380 * 103.55975 * 7 6 4 9 9 N 1.34779 * 120.00218 * 283.55343 * 7 6 4 10 10 C 1.46924 * 120.62668 * 4.65552 * 9 7 6 11 11 C 1.52763 * 109.00773 * 233.58283 * 10 9 7 12 12 C 1.53039 * 109.38177 * 305.58649 * 11 10 9 13 13 C 1.50700 * 109.46381 * 181.26313 * 12 11 10 14 14 H 1.07996 * 120.00156 * 239.93668 * 13 12 11 15 15 C 1.37875 * 119.99968 * 59.92843 * 13 12 11 16 16 N 1.31514 * 120.00435 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99955 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47381 * 60.00262 * 17 15 13 19 19 H 1.48498 * 109.47175 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47221 * 300.00263 * 17 15 13 21 21 C 1.53035 * 109.53869 * 61.23886 * 12 11 10 22 22 C 1.46924 * 120.63570 * 184.92999 * 9 7 6 23 23 N 1.34491 * 125.42325 * 180.02562 * 2 1 3 24 24 H 0.96998 * 126.47359 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.47037 * 269.97088 * 1 2 3 26 26 H 1.09001 * 109.47762 * 29.97415 * 1 2 3 27 27 H 1.09005 * 109.46867 * 149.97243 * 1 2 3 28 28 H 1.09010 * 109.46723 * 89.97940 * 5 4 3 29 29 H 1.09001 * 109.47306 * 209.97476 * 5 4 3 30 30 H 1.09000 * 109.47185 * 329.98057 * 5 4 3 31 31 H 1.09002 * 109.58958 * 353.41330 * 10 9 7 32 32 H 1.09003 * 109.58880 * 113.84127 * 10 9 7 33 33 H 1.09004 * 109.56732 * 185.55746 * 11 10 9 34 34 H 1.08996 * 109.36388 * 65.49934 * 11 10 9 35 35 H 1.09001 * 109.46140 * 301.22110 * 12 11 10 36 36 H 0.96996 * 120.00381 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.50225 * 178.68029 * 21 12 11 38 38 H 1.09003 * 109.49817 * 58.58570 * 21 12 11 39 39 H 1.08994 * 109.58782 * 246.15773 * 22 9 7 40 40 H 1.09007 * 109.58124 * 6.44535 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7050 -0.0006 5 6 4.7335 1.6363 -0.0013 6 6 3.5976 -0.6607 0.0050 7 6 4.8029 -1.4980 0.0128 8 8 5.1579 -2.0440 1.0406 9 7 5.5166 -1.6624 -1.1187 10 6 5.1600 -0.9302 -2.3416 11 6 4.9879 -1.9272 -3.4861 12 6 6.2520 -2.7810 -3.6103 13 6 6.0964 -3.7443 -4.7587 14 1 6.1478 -4.8084 -4.5817 15 6 5.8885 -3.2671 -6.0354 16 7 5.8263 -1.9713 -6.2512 17 14 5.6950 -4.4612 -7.4588 18 1 4.5258 -5.3424 -7.2104 19 1 5.4842 -3.7014 -8.7172 20 1 6.9217 -5.2891 -7.5807 21 6 6.4699 -3.5642 -2.3138 22 6 6.6622 -2.5816 -1.1544 23 7 2.2865 -1.0960 -0.0005 24 1 1.9851 -2.0179 -0.0006 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3635 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5143 28 1 5.0194 1.8612 1.0263 29 1 5.5690 1.1608 -0.5151 30 1 4.4691 2.5603 -0.5155 31 1 4.2258 -0.3907 -2.1853 32 1 5.9538 -0.2259 -2.5904 33 1 4.8205 -1.3876 -4.4183 34 1 4.1330 -2.5709 -3.2792 35 1 7.1104 -2.1345 -3.7926 36 1 5.6803 -1.6356 -7.1494 37 1 7.3572 -4.1898 -2.4113 38 1 5.6010 -4.1925 -2.1178 39 1 7.5810 -2.0147 -1.3044 40 1 6.7203 -3.1296 -0.2139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598694513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:49 Heat of formation + Delta-G solvation = -13.160762 kcal Electronic energy + Delta-G solvation = -22103.054915 eV Core-core repulsion = 18917.158631 eV Total energy + Delta-G solvation = -3185.896284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.33032 -40.90033 -38.47254 -35.41777 -34.49344 -33.55005 -32.67424 -31.77966 -30.09719 -28.54050 -27.20145 -24.80364 -24.01914 -22.70298 -22.07620 -21.13105 -20.10015 -18.86804 -18.31314 -17.83986 -16.93868 -16.56254 -16.38594 -16.05485 -15.10029 -14.96688 -14.85568 -14.53756 -14.37180 -14.11569 -13.96771 -13.92695 -13.37870 -13.35490 -13.22278 -13.16013 -12.98991 -12.80217 -12.50959 -12.17889 -12.01153 -11.66429 -11.47950 -11.06793 -11.02589 -11.01172 -10.82115 -10.41701 -9.70698 -9.31956 -8.08767 -6.22130 0.60254 1.08365 1.42330 1.43424 1.50365 1.77997 1.94026 2.32997 2.43461 3.18227 3.29831 3.51124 3.94987 4.03451 4.10270 4.22028 4.31281 4.40286 4.53190 4.56622 4.65900 4.72407 4.74901 4.77219 4.83109 4.92345 4.94263 5.04932 5.10650 5.14346 5.18457 5.37372 5.44940 5.56038 5.61918 5.95639 6.08277 6.26342 6.30567 6.37257 6.85881 6.87490 6.93335 7.45975 8.94673 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.004996 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.891425 B = 5602.819295 C = 6162.490864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.235 3.765 3 N -0.517 5.517 4 C 0.050 3.950 5 C -0.075 4.075 6 C -0.092 4.092 7 C 0.596 3.404 8 O -0.573 6.573 9 N -0.583 5.583 10 C 0.121 3.879 11 C -0.111 4.111 12 C 0.046 3.954 13 C -0.535 4.535 14 H 0.049 0.951 15 C 0.019 3.981 16 N -0.912 5.912 17 Si 0.948 3.052 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.112 4.112 22 C 0.116 3.884 23 N -0.537 5.537 24 H 0.433 0.567 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.024 0.976 35 H 0.007 0.993 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.994 4.314 10.285 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.029 4.029 3 N -0.239 5.239 4 C -0.083 4.083 5 C -0.132 4.132 6 C -0.209 4.209 7 C 0.382 3.618 8 O -0.453 6.453 9 N -0.314 5.314 10 C -0.001 4.001 11 C -0.150 4.150 12 C 0.027 3.973 13 C -0.573 4.573 14 H 0.068 0.932 15 C -0.180 4.180 16 N -0.551 5.551 17 Si 0.774 3.226 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.150 4.150 22 C -0.006 4.006 23 N -0.142 5.142 24 H 0.273 0.727 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.043 0.957 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.070 4.955 10.647 14.249 hybrid contribution 0.211 -1.930 -1.070 2.217 sum -7.859 3.025 9.577 12.753 Atomic orbital electron populations 1.20490 0.80931 1.05849 1.05370 1.24197 0.97351 0.80523 1.00855 1.69988 1.01574 1.29437 1.22859 1.21238 0.94156 0.90054 1.02847 1.20232 0.91868 0.97807 1.03334 1.20411 0.85336 0.95282 1.19911 1.17108 0.82343 0.79326 0.82975 1.90767 1.71585 1.50468 1.32487 1.48179 1.30462 1.42581 1.10153 1.21755 1.00802 0.94311 0.83255 1.21696 0.98580 0.97405 0.97297 1.18612 0.93502 0.93727 0.91448 1.21504 1.49407 0.93178 0.93228 0.93244 1.25624 0.94969 0.96497 1.00928 1.69936 1.50301 1.13024 1.21877 0.85777 0.78624 0.79268 0.78951 1.20054 1.20977 1.19874 1.21858 1.01008 0.97434 0.94748 1.21762 0.87629 0.91507 0.99691 1.43011 1.04414 1.11158 1.55661 0.72696 0.87983 0.88158 0.88292 0.90057 0.91306 0.89342 0.90346 0.90946 0.90277 0.95671 0.97470 0.92914 0.91068 0.93811 0.90273 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.51 71.24 0.75 -0.14 16 2 C 0.23 5.60 8.12 138.20 1.12 6.72 16 3 N -0.52 -15.22 11.20 -175.57 -1.97 -17.19 16 4 C 0.05 1.52 6.41 41.97 0.27 1.79 16 5 C -0.07 -1.92 10.24 71.24 0.73 -1.19 16 6 C -0.09 -2.92 5.25 40.01 0.21 -2.71 16 7 C 0.60 21.14 7.18 86.47 0.62 21.77 16 8 O -0.57 -23.18 16.54 -4.29 -0.07 -23.25 16 9 N -0.58 -20.44 2.98 -824.35 -2.46 -22.90 16 10 C 0.12 4.35 5.89 86.22 0.51 4.86 16 11 C -0.11 -4.89 5.14 30.53 0.16 -4.73 16 12 C 0.05 2.13 2.06 -11.51 -0.02 2.11 16 13 C -0.54 -28.12 8.56 25.60 0.22 -27.90 16 14 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 15 C 0.02 1.00 5.30 84.65 0.45 1.45 16 16 N -0.91 -49.82 11.31 21.45 0.24 -49.58 16 17 Si 0.95 42.04 29.54 68.60 2.03 44.07 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 C -0.11 -4.40 5.30 30.67 0.16 -4.23 16 22 C 0.12 3.99 6.42 86.36 0.55 4.55 16 23 N -0.54 -13.78 6.19 -176.12 -1.09 -14.87 16 24 H 0.43 8.89 8.96 -92.71 -0.83 8.05 16 25 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.07 1.78 7.53 -2.39 -0.02 1.76 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 2.71 5.80 -2.39 -0.01 2.70 16 32 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.08 3.95 6.03 -2.39 -0.01 3.93 16 34 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 36 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 37 H 0.07 2.65 8.14 -2.39 -0.02 2.64 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.09 2.91 7.03 -2.38 -0.02 2.90 16 Total: -1.00 -65.52 326.42 2.63 -62.89 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.22 Total: 18.49 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.73 Total: 2.34 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -5.27 Total: -104.54 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.07 Total: -23.25 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -65.52 2.63 -62.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598694513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.728 kcal (2) G-P(sol) polarization free energy of solvation -65.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds