Wall clock time and date at job start Mon Mar 30 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30854 * 125.42172 * 2 1 4 4 C 1.33317 * 109.68772 * 179.74092 * 3 2 1 5 5 C 1.50702 * 126.10611 * 180.27866 * 4 3 2 6 6 C 1.36663 * 107.78666 * 0.37733 * 4 3 2 7 7 C 1.46760 * 126.84526 * 179.89362 * 6 4 3 8 8 O 1.21683 * 120.00111 * 324.54950 * 7 6 4 9 9 N 1.34778 * 119.99770 * 144.54541 * 7 6 4 10 10 C 1.46921 * 120.63038 * 354.43632 * 9 7 6 11 11 C 1.53197 * 108.77355 * 233.62692 * 10 9 7 12 12 C 1.53039 * 109.31202 * 305.36287 * 11 10 9 13 13 C 1.53042 * 109.53575 * 61.36974 * 12 11 10 14 14 H 1.08993 * 109.50056 * 58.61436 * 13 12 11 15 15 C 1.50700 * 109.49800 * 178.68084 * 13 12 11 16 16 H 1.07995 * 119.99908 * 5.41026 * 15 13 12 17 17 C 1.37878 * 120.00167 * 185.40650 * 15 13 12 18 18 N 1.31514 * 120.00027 * 9.11517 * 17 15 13 19 19 Si 1.86796 * 120.00121 * 189.10603 * 17 15 13 20 20 H 1.48495 * 109.47355 * 94.99212 * 19 17 15 21 21 H 1.48501 * 109.47278 * 214.99020 * 19 17 15 22 22 H 1.48505 * 109.47322 * 334.98882 * 19 17 15 23 23 C 1.46929 * 120.62813 * 174.45336 * 9 7 6 24 24 N 1.34499 * 125.41773 * 179.97438 * 2 1 3 25 25 H 0.96995 * 126.47361 * 0.04444 * 24 2 1 26 26 H 1.09003 * 109.47487 * 270.02526 * 1 2 3 27 27 H 1.09002 * 109.46933 * 30.02449 * 1 2 3 28 28 H 1.09001 * 109.47146 * 150.02079 * 1 2 3 29 29 H 1.09002 * 109.46989 * 270.11598 * 5 4 3 30 30 H 1.08995 * 109.47305 * 30.11874 * 5 4 3 31 31 H 1.09005 * 109.46921 * 150.12276 * 5 4 3 32 32 H 1.09000 * 109.58877 * 353.41757 * 10 9 7 33 33 H 1.09004 * 109.58546 * 113.70061 * 10 9 7 34 34 H 1.09008 * 109.49524 * 185.41417 * 11 10 9 35 35 H 1.08996 * 109.49325 * 65.31972 * 11 10 9 36 36 H 1.08995 * 109.46313 * 301.34471 * 12 11 10 37 37 H 1.09002 * 109.45834 * 181.38162 * 12 11 10 38 38 H 0.96996 * 120.00276 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.59060 * 6.58682 * 23 9 7 40 40 H 1.08999 * 109.58972 * 246.16038 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5486 0.7048 0.0057 5 6 4.7335 1.6360 0.0135 6 6 3.5976 -0.6609 0.0009 7 6 4.8028 -1.4983 0.0022 8 8 5.7945 -1.1383 -0.6041 9 7 4.8112 -2.6661 0.6750 10 6 3.6675 -3.0571 1.5102 11 6 4.1747 -3.3866 2.9178 12 6 5.2756 -4.4455 2.8240 13 6 6.4460 -3.8959 2.0053 14 1 6.8259 -2.9897 2.4768 15 6 7.5429 -4.9272 1.9408 16 1 7.3848 -5.9105 2.3586 17 6 8.7482 -4.6156 1.3484 18 7 9.0088 -3.3741 1.0013 19 14 10.0113 -5.9565 1.0389 20 1 9.8643 -6.4642 -0.3488 21 1 11.3768 -5.4020 1.2210 22 1 9.7970 -7.0695 1.9985 23 6 5.9646 -3.5722 0.5874 24 7 2.2864 -1.0961 0.0005 25 1 1.9849 -2.0180 0.0003 26 1 -0.3634 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 5.0230 1.8642 -1.0123 30 1 4.4674 2.5583 0.5297 31 1 5.5672 1.1587 0.5287 32 1 2.9546 -2.2341 1.5620 33 1 3.1832 -3.9335 1.0796 34 1 3.3514 -3.7701 3.5206 35 1 4.5756 -2.4848 3.3803 36 1 4.8806 -5.3381 2.3390 37 1 5.6212 -4.6997 3.8261 38 1 9.8566 -3.1548 0.5842 39 1 6.7673 -3.0892 0.0304 40 1 5.6691 -4.4921 0.0829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598746498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:03 Heat of formation + Delta-G solvation = 11.126753 kcal Electronic energy + Delta-G solvation = -22169.473207 eV Core-core repulsion = 18984.630108 eV Total energy + Delta-G solvation = -3184.843098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.25594 -39.19216 -36.78209 -33.78236 -33.12473 -32.19207 -31.65604 -29.93517 -29.11011 -26.76002 -25.15834 -24.30386 -22.05950 -21.41574 -20.94898 -19.55901 -18.78680 -17.39287 -16.31117 -16.15335 -15.55009 -15.27396 -14.59075 -14.37517 -13.94233 -13.74637 -13.46395 -13.17503 -12.97599 -12.79540 -12.70499 -12.53276 -12.37795 -12.21157 -11.99355 -11.87270 -11.09605 -10.99163 -10.64156 -10.50419 -10.32410 -10.20579 -9.99581 -9.80676 -9.54359 -9.13867 -9.05175 -8.44437 -8.26693 -7.86893 -6.05454 -4.11002 1.55392 2.78057 2.95908 3.28044 3.36898 3.38195 3.40151 3.75560 4.24482 4.40714 4.77319 4.93668 5.09261 5.14709 5.25129 5.26012 5.33130 5.38108 5.48906 5.61068 5.80927 5.89407 5.99006 6.04611 6.11666 6.20204 6.22089 6.50176 6.53438 6.71411 6.74659 6.87759 6.99184 7.07709 7.24856 7.53852 7.79378 7.90793 7.96248 8.07374 8.32667 8.67319 8.93475 9.53867 11.02298 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027339 B = 0.004908 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.940732 B = 5703.495344 C = 6363.095817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.221 3.779 3 N -0.493 5.493 4 C 0.079 3.921 5 C -0.070 4.070 6 C -0.070 4.070 7 C 0.582 3.418 8 O -0.516 6.516 9 N -0.602 5.602 10 C 0.100 3.900 11 C -0.132 4.132 12 C -0.110 4.110 13 C 0.039 3.961 14 H 0.038 0.962 15 C -0.525 4.525 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.876 5.876 19 Si 0.888 3.112 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.118 3.882 24 N -0.552 5.552 25 H 0.421 0.579 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.264 0.736 39 H 0.108 0.892 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.800 3.615 -0.254 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.042 4.042 3 N -0.214 5.214 4 C -0.054 4.054 5 C -0.127 4.127 6 C -0.186 4.186 7 C 0.367 3.633 8 O -0.391 6.391 9 N -0.335 5.335 10 C -0.024 4.024 11 C -0.170 4.170 12 C -0.147 4.147 13 C 0.019 3.981 14 H 0.056 0.944 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.512 5.512 19 Si 0.716 3.284 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.002 4.002 24 N -0.159 5.159 25 H 0.261 0.739 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.126 0.874 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.340 4.724 -0.678 17.023 hybrid contribution 0.729 -2.111 -0.156 2.238 sum -15.611 2.613 -0.833 15.850 Atomic orbital electron populations 1.20237 0.84529 1.04215 1.03785 1.23309 0.95651 0.81742 1.03516 1.69999 1.01690 1.28333 1.21412 1.20954 0.93002 0.90321 1.01142 1.20140 0.92698 0.96879 1.03030 1.21194 0.84044 0.95583 1.17788 1.16962 0.85571 0.80533 0.80192 1.90861 1.33454 1.70517 1.44250 1.48449 1.19967 1.19561 1.45548 1.21832 0.88767 0.99327 0.92453 1.21922 0.99325 1.00838 0.94908 1.21628 0.95877 0.96449 1.00792 1.18977 0.91503 0.97341 0.90242 0.94426 1.21025 0.97574 0.98605 1.39164 0.92342 1.25041 0.97992 0.95175 0.95558 1.69976 1.24078 1.16806 1.40383 0.86639 0.80914 0.82202 0.78641 1.20631 1.21202 1.19877 1.22269 0.85663 0.90158 1.02083 1.43498 1.06037 1.10048 1.56354 0.73870 0.89821 0.88934 0.90678 0.90625 0.91220 0.90321 0.91330 0.92020 0.92145 0.91910 0.93250 0.92718 0.92636 0.87409 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.51 36.00 0.38 -0.11 16 2 C 0.22 2.71 8.12 -155.62 -1.26 1.45 16 3 N -0.49 -7.63 11.20 -6.85 -0.08 -7.71 16 4 C 0.08 1.33 7.14 -82.52 -0.59 0.74 16 5 C -0.07 -1.09 9.82 36.01 0.35 -0.74 16 6 C -0.07 -1.19 6.04 -82.14 -0.50 -1.69 16 7 C 0.58 11.86 7.38 -12.82 -0.09 11.76 16 8 O -0.52 -12.51 15.53 5.20 0.08 -12.43 16 9 N -0.60 -11.74 2.97 -174.28 -0.52 -12.26 16 10 C 0.10 1.49 5.52 -3.71 -0.02 1.47 16 11 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 12 C -0.11 -2.12 5.11 -26.69 -0.14 -2.25 16 13 C 0.04 0.93 2.11 -91.65 -0.19 0.74 16 14 H 0.04 1.04 8.09 -51.93 -0.42 0.62 16 15 C -0.53 -13.99 8.48 -34.44 -0.29 -14.28 16 16 H 0.06 1.53 7.76 -52.49 -0.41 1.12 16 17 C 0.07 1.81 5.25 -17.82 -0.09 1.72 16 18 N -0.88 -25.41 12.19 55.43 0.68 -24.73 16 19 Si 0.89 21.01 29.55 -169.99 -5.02 15.99 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 23 C 0.12 2.76 5.49 -3.71 -0.02 2.74 16 24 N -0.55 -6.97 4.74 -7.02 -0.03 -7.01 16 25 H 0.42 4.09 7.51 -40.82 -0.31 3.79 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.35 7.55 -51.93 -0.39 0.95 16 32 H 0.07 0.89 4.80 -51.93 -0.25 0.64 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.11 2.95 5.91 -51.93 -0.31 2.65 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -32.65 324.05 -8.51 -41.16 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.87 Total: 2.80 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.63 Total: -0.69 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.05 Total: -51.71 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.65 -8.51 -41.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598746498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.287 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds