Wall clock time and date at job start Mon Mar 30 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30854 * 125.42172 * 2 1 4 4 C 1.33317 * 109.68772 * 179.74092 * 3 2 1 5 5 C 1.50702 * 126.10611 * 180.27866 * 4 3 2 6 6 C 1.36663 * 107.78666 * 0.37733 * 4 3 2 7 7 C 1.46760 * 126.84526 * 179.89362 * 6 4 3 8 8 O 1.21683 * 120.00111 * 324.54950 * 7 6 4 9 9 N 1.34778 * 119.99770 * 144.54541 * 7 6 4 10 10 C 1.46921 * 120.63038 * 354.43632 * 9 7 6 11 11 C 1.53197 * 108.77355 * 233.62692 * 10 9 7 12 12 C 1.53039 * 109.31202 * 305.36287 * 11 10 9 13 13 C 1.53042 * 109.53575 * 61.36974 * 12 11 10 14 14 H 1.08993 * 109.50056 * 58.61436 * 13 12 11 15 15 C 1.50700 * 109.49800 * 178.68084 * 13 12 11 16 16 H 1.07995 * 119.99908 * 5.41026 * 15 13 12 17 17 C 1.37878 * 120.00167 * 185.40650 * 15 13 12 18 18 N 1.31514 * 120.00027 * 9.11517 * 17 15 13 19 19 Si 1.86796 * 120.00121 * 189.10603 * 17 15 13 20 20 H 1.48495 * 109.47355 * 94.99212 * 19 17 15 21 21 H 1.48501 * 109.47278 * 214.99020 * 19 17 15 22 22 H 1.48505 * 109.47322 * 334.98882 * 19 17 15 23 23 C 1.46929 * 120.62813 * 174.45336 * 9 7 6 24 24 N 1.34499 * 125.41773 * 179.97438 * 2 1 3 25 25 H 0.96995 * 126.47361 * 0.04444 * 24 2 1 26 26 H 1.09003 * 109.47487 * 270.02526 * 1 2 3 27 27 H 1.09002 * 109.46933 * 30.02449 * 1 2 3 28 28 H 1.09001 * 109.47146 * 150.02079 * 1 2 3 29 29 H 1.09002 * 109.46989 * 270.11598 * 5 4 3 30 30 H 1.08995 * 109.47305 * 30.11874 * 5 4 3 31 31 H 1.09005 * 109.46921 * 150.12276 * 5 4 3 32 32 H 1.09000 * 109.58877 * 353.41757 * 10 9 7 33 33 H 1.09004 * 109.58546 * 113.70061 * 10 9 7 34 34 H 1.09008 * 109.49524 * 185.41417 * 11 10 9 35 35 H 1.08996 * 109.49325 * 65.31972 * 11 10 9 36 36 H 1.08995 * 109.46313 * 301.34471 * 12 11 10 37 37 H 1.09002 * 109.45834 * 181.38162 * 12 11 10 38 38 H 0.96996 * 120.00276 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.59060 * 6.58682 * 23 9 7 40 40 H 1.08999 * 109.58972 * 246.16038 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5486 0.7048 0.0057 5 6 4.7335 1.6360 0.0135 6 6 3.5976 -0.6609 0.0009 7 6 4.8028 -1.4983 0.0022 8 8 5.7945 -1.1383 -0.6041 9 7 4.8112 -2.6661 0.6750 10 6 3.6675 -3.0571 1.5102 11 6 4.1747 -3.3866 2.9178 12 6 5.2756 -4.4455 2.8240 13 6 6.4460 -3.8959 2.0053 14 1 6.8259 -2.9897 2.4768 15 6 7.5429 -4.9272 1.9408 16 1 7.3848 -5.9105 2.3586 17 6 8.7482 -4.6156 1.3484 18 7 9.0088 -3.3741 1.0013 19 14 10.0113 -5.9565 1.0389 20 1 9.8643 -6.4642 -0.3488 21 1 11.3768 -5.4020 1.2210 22 1 9.7970 -7.0695 1.9985 23 6 5.9646 -3.5722 0.5874 24 7 2.2864 -1.0961 0.0005 25 1 1.9849 -2.0180 0.0003 26 1 -0.3634 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 5.0230 1.8642 -1.0123 30 1 4.4674 2.5583 0.5297 31 1 5.5672 1.1587 0.5287 32 1 2.9546 -2.2341 1.5620 33 1 3.1832 -3.9335 1.0796 34 1 3.3514 -3.7701 3.5206 35 1 4.5756 -2.4848 3.3803 36 1 4.8806 -5.3381 2.3390 37 1 5.6212 -4.6997 3.8261 38 1 9.8566 -3.1548 0.5842 39 1 6.7673 -3.0892 0.0304 40 1 5.6691 -4.4921 0.0829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598746498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:03 Heat of formation + Delta-G solvation = -10.503213 kcal Electronic energy + Delta-G solvation = -22170.411152 eV Core-core repulsion = 18984.630108 eV Total energy + Delta-G solvation = -3185.781044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.40498 -40.75285 -38.41881 -35.47254 -34.45753 -33.63274 -32.95773 -31.62476 -30.08992 -28.13107 -27.01707 -25.75245 -23.65691 -22.72380 -22.12593 -21.06147 -20.13608 -18.89554 -18.18677 -17.47741 -16.91475 -16.77960 -16.40394 -15.82195 -15.29543 -14.98750 -14.94032 -14.50252 -14.39137 -14.14631 -13.96356 -13.86235 -13.60656 -13.33149 -13.25751 -13.01444 -12.88976 -12.79137 -12.39729 -12.26631 -11.95089 -11.70438 -11.49477 -11.21996 -10.98352 -10.93628 -10.77538 -10.53951 -9.66586 -9.32365 -8.15900 -6.28629 0.31349 1.39510 1.41146 1.51608 1.61843 1.80410 1.93976 2.35169 2.41994 3.15252 3.28929 3.58444 3.84944 3.97030 4.04596 4.10959 4.23525 4.44855 4.56883 4.64204 4.68765 4.69687 4.71238 4.77158 4.80881 4.92162 5.00470 5.00977 5.13011 5.16413 5.20807 5.25807 5.46044 5.50567 5.58632 5.84251 5.90370 6.29158 6.31817 6.44986 6.84915 6.88095 7.10619 7.40832 8.91285 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027339 B = 0.004908 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.940732 B = 5703.495344 C = 6363.095817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.249 3.751 3 N -0.521 5.521 4 C 0.070 3.930 5 C -0.068 4.068 6 C -0.095 4.095 7 C 0.578 3.422 8 O -0.572 6.572 9 N -0.604 5.604 10 C 0.096 3.904 11 C -0.125 4.125 12 C -0.104 4.104 13 C 0.037 3.963 14 H -0.012 1.012 15 C -0.537 4.537 16 H 0.064 0.936 17 C 0.013 3.987 18 N -0.916 5.916 19 Si 0.954 3.046 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.260 1.260 23 C 0.132 3.868 24 N -0.538 5.538 25 H 0.437 0.563 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.260 0.740 39 H 0.058 0.942 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.645 2.227 0.317 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.015 4.015 3 N -0.243 5.243 4 C -0.064 4.064 5 C -0.126 4.126 6 C -0.211 4.211 7 C 0.366 3.634 8 O -0.451 6.451 9 N -0.335 5.335 10 C -0.025 4.025 11 C -0.163 4.163 12 C -0.141 4.141 13 C 0.017 3.983 14 H 0.006 0.994 15 C -0.575 4.575 16 H 0.083 0.917 17 C -0.187 4.187 18 N -0.554 5.554 19 Si 0.779 3.221 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.184 1.184 23 C 0.010 3.990 24 N -0.147 5.147 25 H 0.280 0.720 26 H 0.125 0.875 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.241 3.286 -0.073 20.507 hybrid contribution 1.819 -1.631 -0.298 2.461 sum -18.422 1.655 -0.371 18.500 Atomic orbital electron populations 1.20565 0.80220 1.06114 1.05807 1.24386 0.97514 0.80561 0.99058 1.70052 1.01008 1.29868 1.23361 1.21148 0.93991 0.90517 1.00711 1.20094 0.92022 0.97493 1.02967 1.20529 0.84544 0.95028 1.20994 1.17420 0.86125 0.80592 0.79280 1.90820 1.35884 1.71812 1.46578 1.48430 1.20177 1.18889 1.46016 1.22196 0.87434 1.01673 0.91237 1.21891 0.99458 0.98903 0.96084 1.21509 0.95070 0.97923 0.99622 1.18905 0.93203 0.94914 0.91236 0.99419 1.21478 0.98396 0.99230 1.38386 0.91741 1.25880 1.00331 0.97035 0.95474 1.70155 1.24429 1.19086 1.41722 0.85605 0.78061 0.79651 0.78760 1.20195 1.21469 1.18381 1.21709 0.86056 0.90450 1.00770 1.43354 1.04199 1.11189 1.55996 0.71956 0.87516 0.88260 0.87575 0.90590 0.89250 0.92861 0.88876 0.88476 0.87371 0.93943 0.91628 0.92977 0.93130 0.92362 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.51 71.23 0.75 0.14 16 2 C 0.25 5.21 8.12 138.20 1.12 6.33 16 3 N -0.52 -15.15 11.20 -175.57 -1.97 -17.11 16 4 C 0.07 2.36 7.14 41.97 0.30 2.66 16 5 C -0.07 -2.22 9.82 71.24 0.70 -1.52 16 6 C -0.10 -3.19 6.04 40.01 0.24 -2.95 16 7 C 0.58 24.43 7.38 86.47 0.64 25.07 16 8 O -0.57 -29.89 15.53 -4.29 -0.07 -29.95 16 9 N -0.60 -23.76 2.97 -823.51 -2.45 -26.20 16 10 C 0.10 2.60 5.52 86.37 0.48 3.07 16 11 C -0.13 -3.62 6.08 30.67 0.19 -3.44 16 12 C -0.10 -3.86 5.11 30.62 0.16 -3.70 16 13 C 0.04 1.83 2.11 -11.46 -0.02 1.81 16 14 H -0.01 -0.74 8.09 -2.39 -0.02 -0.76 16 15 C -0.54 -29.21 8.48 25.60 0.22 -28.99 16 16 H 0.06 3.35 7.76 -2.91 -0.02 3.33 16 17 C 0.01 0.72 5.25 84.65 0.44 1.16 16 18 N -0.92 -56.22 12.19 21.45 0.26 -55.95 16 19 Si 0.95 44.06 29.55 68.60 2.03 46.09 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 23 C 0.13 6.40 5.49 86.36 0.47 6.87 16 24 N -0.54 -11.99 4.74 -176.12 -0.83 -12.83 16 25 H 0.44 6.64 7.51 -92.71 -0.70 5.94 16 26 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.05 1.98 7.55 -2.38 -0.02 1.96 16 32 H 0.09 2.08 4.80 -2.39 -0.01 2.07 16 33 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.06 3.42 5.91 -2.39 -0.01 3.41 16 40 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -78.19 324.05 3.01 -75.18 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.35 Total: 14.27 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 5.68 Total: 6.51 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.99 Total: -112.10 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.07 Total: -29.95 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -78.19 3.01 -75.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598746498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.678 kcal (2) G-P(sol) polarization free energy of solvation -78.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds