Wall clock time and date at job start Mon Mar 30 2020 02:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34492 * 126.83534 * 2 1 4 4 N 1.36436 * 108.85750 * 179.97438 * 3 2 1 5 5 H 0.97005 * 124.85458 * 180.02562 * 4 3 2 6 6 C 1.34662 * 110.30199 * 359.97438 * 4 3 2 7 7 C 1.36772 * 108.39388 * 359.74115 * 6 4 3 8 8 C 1.47260 * 126.94433 * 180.25667 * 7 6 4 9 9 O 1.21623 * 120.00093 * 221.12996 * 8 7 6 10 10 N 1.34781 * 119.99711 * 41.12546 * 8 7 6 11 11 C 1.47077 * 120.88090 * 4.54503 * 10 8 7 12 12 C 1.53696 * 108.28010 * 128.75269 * 11 10 8 13 13 N 1.46894 * 109.25483 * 54.07987 * 12 11 10 14 14 C 1.46903 * 111.00257 * 172.61031 * 13 12 11 15 15 C 1.50699 * 109.47022 * 59.58064 * 14 13 12 16 16 H 1.08005 * 120.00074 * 355.54186 * 15 14 13 17 17 C 1.37875 * 120.00215 * 175.53488 * 15 14 13 18 18 N 1.31519 * 119.99859 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00384 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46858 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47164 * 119.99973 * 19 17 15 22 22 H 1.48499 * 109.47147 * 240.00378 * 19 17 15 23 23 C 1.46902 * 111.27173 * 296.75798 * 13 12 11 24 24 C 1.47078 * 120.87884 * 184.81752 * 10 8 7 25 25 H 1.08997 * 109.47067 * 90.02354 * 1 2 3 26 26 H 1.09001 * 109.46850 * 330.01859 * 1 2 3 27 27 H 1.08996 * 109.46828 * 210.02711 * 1 2 3 28 28 H 1.08006 * 125.56684 * 359.97438 * 3 2 1 29 29 H 1.07998 * 125.80556 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.62898 * 248.52065 * 11 10 8 31 31 H 1.09000 * 109.63122 * 9.09533 * 11 10 8 32 32 H 1.09005 * 109.64610 * 294.07972 * 12 11 10 33 33 H 1.09000 * 109.42186 * 173.94919 * 12 11 10 34 34 H 1.08996 * 109.47962 * 179.58532 * 14 13 12 35 35 H 1.09006 * 109.46772 * 299.58753 * 14 13 12 36 36 H 0.97000 * 119.99781 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.49359 * 303.14858 * 23 13 12 38 38 H 1.09001 * 109.49396 * 183.06582 * 23 13 12 39 39 H 1.08997 * 109.63052 * 350.89928 * 24 10 8 40 40 H 1.08998 * 109.62837 * 111.48237 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6553 0.0006 5 1 4.3841 1.2414 0.0011 6 6 3.6657 -0.6902 0.0015 7 6 2.3864 -1.1740 0.0074 8 6 1.9749 -2.5880 0.0157 9 8 1.0414 -2.9537 -0.6727 10 7 2.6330 -3.4768 0.7862 11 6 3.6992 -3.0398 1.7002 12 6 3.4036 -3.6136 3.0950 13 7 3.2310 -5.0688 2.9936 14 6 3.1207 -5.6801 4.3248 15 6 1.9369 -5.0940 5.0501 16 1 1.3705 -4.2921 4.5998 17 6 1.5766 -5.5815 6.2885 18 7 2.2665 -6.5577 6.8370 19 14 0.1087 -4.8555 7.1873 20 1 -0.4927 -3.7769 6.3626 21 1 -0.9007 -5.9182 7.4258 22 1 0.5531 -4.2939 8.4881 23 6 2.0711 -5.4111 2.1595 24 6 2.3079 -4.9101 0.7308 25 1 -0.3633 -0.0004 -1.0276 26 1 -0.3633 0.8902 0.5136 27 1 -0.3633 -0.8897 0.5142 28 1 1.9868 2.1059 -0.0004 29 1 4.5664 -1.2860 0.0017 30 1 4.6607 -3.4102 1.3448 31 1 3.7179 -1.9510 1.7471 32 1 2.4916 -3.1658 3.4898 33 1 4.2366 -3.3917 3.7622 34 1 2.9863 -6.7567 4.2205 35 1 4.0297 -5.4807 4.8925 36 1 2.0128 -6.9009 7.7081 37 1 1.1777 -4.9382 2.5673 38 1 1.9377 -6.4928 2.1483 39 1 1.4062 -5.0584 0.1366 40 1 3.1383 -5.4569 0.2841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602205609.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:25 Heat of formation + Delta-G solvation = -3.580093 kcal Electronic energy + Delta-G solvation = -21919.887579 eV Core-core repulsion = 18734.406744 eV Total energy + Delta-G solvation = -3185.480835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.16775 -40.61212 -38.80296 -35.97905 -34.32908 -33.38093 -32.38778 -30.76096 -29.59039 -27.47196 -27.16867 -24.76430 -24.48985 -23.14011 -21.44966 -20.71713 -19.57275 -18.92570 -18.26896 -17.63698 -16.73242 -16.60247 -16.31308 -15.97734 -15.50697 -15.19076 -15.08139 -14.71554 -14.55869 -14.30720 -13.97895 -13.68730 -13.55168 -13.53090 -13.25783 -12.97546 -12.89806 -12.53506 -12.46723 -12.34602 -12.16730 -11.94842 -11.81342 -11.61150 -10.90532 -10.63187 -9.76103 -9.45253 -9.11217 -9.04960 -8.19012 -6.37720 0.93994 1.31497 1.34017 1.44924 1.52659 1.96963 2.33989 2.35362 2.55034 3.06141 3.32395 3.77971 4.02994 4.09769 4.15255 4.28502 4.34922 4.37796 4.49178 4.53462 4.63542 4.71363 4.78148 4.86770 4.90083 4.97301 5.05092 5.11425 5.18255 5.22416 5.29068 5.31189 5.56604 5.71652 5.83336 5.99538 6.01983 6.17434 6.44511 6.53859 6.76864 6.82635 7.27081 7.33738 8.83460 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019916 B = 0.004797 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.546338 B = 5835.582380 C = 6239.418257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.161 4.161 3 C -0.001 4.001 4 N -0.532 5.532 5 H 0.439 0.561 6 C 0.063 3.937 7 C -0.264 4.264 8 C 0.583 3.417 9 O -0.595 6.595 10 N -0.608 5.608 11 C 0.118 3.882 12 C 0.049 3.951 13 N -0.532 5.532 14 C 0.200 3.800 15 C -0.557 4.557 16 H 0.047 0.953 17 C 0.017 3.983 18 N -0.922 5.922 19 Si 0.951 3.049 20 H -0.276 1.276 21 H -0.277 1.277 22 H -0.272 1.272 23 C 0.056 3.944 24 C 0.126 3.874 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.029 0.971 28 H 0.204 0.796 29 H 0.202 0.798 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.011 0.989 33 H 0.083 0.917 34 H 0.010 0.990 35 H 0.014 0.986 36 H 0.266 0.734 37 H 0.008 0.992 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.052 16.670 -13.543 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.167 4.167 3 C -0.130 4.130 4 N -0.127 5.127 5 H 0.280 0.720 6 C -0.075 4.075 7 C -0.274 4.274 8 C 0.375 3.625 9 O -0.477 6.477 10 N -0.340 5.340 11 C -0.004 4.004 12 C -0.080 4.080 13 N -0.256 5.256 14 C 0.073 3.927 15 C -0.596 4.596 16 H 0.065 0.935 17 C -0.183 4.183 18 N -0.561 5.561 19 Si 0.777 3.223 20 H -0.201 1.201 21 H -0.203 1.203 22 H -0.198 1.198 23 C -0.073 4.073 24 C 0.003 3.997 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.048 0.952 28 H 0.221 0.779 29 H 0.219 0.781 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.029 0.971 33 H 0.102 0.898 34 H 0.028 0.972 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.026 0.974 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.123 16.287 -13.966 22.312 hybrid contribution -1.513 0.108 1.401 2.065 sum 4.610 16.395 -12.564 21.164 Atomic orbital electron populations 1.20031 0.90313 1.01362 1.01491 1.20744 0.95731 0.91471 1.08783 1.21936 0.82361 0.99628 1.09037 1.41498 1.08706 1.06200 1.56334 0.71999 1.22203 0.97785 0.84637 1.02854 1.20316 0.95216 0.91413 1.20491 1.18042 0.80729 0.85508 0.78225 1.90684 1.30888 1.80877 1.45250 1.48155 1.37613 1.07335 1.40871 1.22292 0.90258 1.00856 0.86985 1.22403 1.00059 0.88468 0.97089 1.62449 1.38537 1.09995 1.14570 1.19453 0.94622 0.93911 0.84723 1.21964 1.14767 1.19215 1.03626 0.93530 1.25710 0.99174 0.95159 0.98229 1.70046 1.41156 1.27359 1.17555 0.85615 0.79654 0.78404 0.78654 1.20087 1.20301 1.19772 1.22193 0.91912 1.00307 0.92888 1.21645 1.02030 0.80319 0.95688 0.91973 0.89817 0.95210 0.77948 0.78149 0.88421 0.87258 0.97103 0.89824 0.97191 0.96824 0.92493 0.97378 0.90654 0.90251 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.91 10.27 71.24 0.73 -1.18 16 2 C -0.16 -4.03 6.36 -18.51 -0.12 -4.15 16 3 C 0.00 -0.01 11.82 83.12 0.98 0.97 16 4 N -0.53 -6.15 5.90 -194.55 -1.15 -7.30 16 5 H 0.44 1.34 8.96 -92.70 -0.83 0.51 16 6 C 0.06 1.08 9.56 83.92 0.80 1.88 16 7 C -0.26 -7.26 5.37 -19.04 -0.10 -7.36 16 8 C 0.58 20.49 7.55 86.61 0.65 21.15 16 9 O -0.59 -25.42 16.48 -4.10 -0.07 -25.48 16 10 N -0.61 -19.86 3.00 -821.12 -2.47 -22.32 16 11 C 0.12 3.22 5.65 86.50 0.49 3.71 16 12 C 0.05 1.81 5.17 86.54 0.45 2.26 16 13 N -0.53 -22.48 4.83 -898.86 -4.34 -26.82 16 14 C 0.20 10.38 5.11 85.56 0.44 10.82 16 15 C -0.56 -31.26 7.76 25.60 0.20 -31.07 16 16 H 0.05 2.68 5.87 -2.91 -0.02 2.66 16 17 C 0.02 0.97 5.46 84.65 0.46 1.43 16 18 N -0.92 -54.56 13.29 21.45 0.28 -54.28 16 19 Si 0.95 44.82 29.54 68.60 2.03 46.84 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 23 C 0.06 2.31 5.24 86.38 0.45 2.76 16 24 C 0.13 4.32 6.61 86.35 0.57 4.89 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.20 1.59 8.06 -2.91 -0.02 1.56 16 29 H 0.20 2.22 7.35 -2.91 -0.02 2.20 16 30 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.11 2.48 4.97 -2.39 -0.01 2.46 16 32 H 0.01 0.47 6.63 -2.38 -0.02 0.45 16 33 H 0.08 2.95 8.11 -2.39 -0.02 2.93 16 34 H 0.01 0.56 8.07 -2.39 -0.02 0.54 16 35 H 0.01 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 37 H 0.01 0.38 7.09 -2.39 -0.02 0.36 16 38 H 0.08 3.05 8.06 -2.39 -0.02 3.03 16 39 H 0.08 2.86 7.04 -2.39 -0.02 2.84 16 40 H 0.09 2.69 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -76.57 323.65 0.52 -76.05 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.22 Total: 7.20 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 6.01 Total: 6.11 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -7.67 Total: -110.72 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.07 Total: -25.48 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -76.57 0.52 -76.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205609.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.466 kcal (2) G-P(sol) polarization free energy of solvation -76.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds