Wall clock time and date at job start Mon Mar 30 2020 01:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34656 * 125.80258 * 2 1 4 4 H 0.97005 * 124.85242 * 359.97438 * 3 2 1 5 5 C 1.36445 * 110.29784 * 180.29991 * 3 2 1 6 6 C 1.34480 * 108.85833 * 359.72142 * 5 3 2 7 7 C 1.36772 * 125.80087 * 179.82275 * 2 1 3 8 8 C 1.47261 * 126.94228 * 359.97438 * 7 2 1 9 9 O 1.21623 * 120.00083 * 321.65976 * 8 7 2 10 10 N 1.34781 * 119.99910 * 141.65848 * 8 7 2 11 11 C 1.47078 * 120.88319 * 174.39599 * 10 8 7 12 12 C 1.53240 * 108.52111 * 128.83964 * 11 10 8 13 13 N 1.46899 * 109.33793 * 53.82950 * 12 11 10 14 14 C 1.46903 * 110.99769 * 172.74753 * 13 12 11 15 15 C 1.50694 * 109.47072 * 190.00372 * 14 13 12 16 16 H 1.08003 * 120.00099 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00312 * 180.02562 * 15 14 13 18 18 N 1.31524 * 119.99638 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00353 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47109 * 59.99909 * 19 17 15 21 21 H 1.48507 * 109.47093 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47155 * 299.99610 * 19 17 15 23 23 C 1.46900 * 111.27295 * 296.89529 * 13 12 11 24 24 C 1.47081 * 120.88062 * 354.42228 * 10 8 7 25 25 H 1.08998 * 109.47013 * 270.17249 * 1 2 3 26 26 H 1.08999 * 109.46892 * 30.17112 * 1 2 3 27 27 H 1.08996 * 109.47058 * 150.17219 * 1 2 3 28 28 H 1.08005 * 125.57075 * 179.70379 * 5 3 2 29 29 H 1.08007 * 126.83528 * 180.02562 * 6 5 3 30 30 H 1.09006 * 109.62349 * 9.13180 * 11 10 8 31 31 H 1.09000 * 109.63130 * 248.55322 * 11 10 8 32 32 H 1.08995 * 109.49072 * 173.79250 * 12 11 10 33 33 H 1.09001 * 109.48937 * 293.87138 * 12 11 10 34 34 H 1.09001 * 109.47106 * 310.00269 * 14 13 12 35 35 H 1.08999 * 109.47318 * 70.00102 * 14 13 12 36 36 H 0.96992 * 119.99409 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.49162 * 183.06248 * 23 13 12 38 38 H 1.08998 * 109.49166 * 303.14821 * 23 13 12 39 39 H 1.09004 * 109.63011 * 111.44883 * 24 10 8 40 40 H 1.08999 * 109.63119 * 350.87521 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0074 -0.0004 5 6 3.6095 0.7274 -0.0067 6 6 3.6882 -0.6151 -0.0050 7 6 2.3071 -1.1093 0.0034 8 6 1.8702 -2.5156 0.0083 9 8 0.9011 -2.8491 0.6632 10 7 2.5443 -3.4332 -0.7130 11 6 2.2019 -4.8610 -0.6273 12 6 2.0092 -5.4014 -2.0482 13 7 3.2009 -5.0954 -2.8509 14 6 3.1300 -5.7444 -4.1669 15 6 4.4606 -5.6160 -4.8625 16 1 5.2771 -5.1032 -4.3759 17 6 4.6354 -6.1522 -6.1207 18 7 3.6409 -6.7762 -6.7135 19 14 6.2845 -5.9925 -6.9833 20 1 7.3367 -6.6472 -6.1650 21 1 6.2125 -6.6475 -8.3142 22 1 6.6151 -4.5552 -7.1569 23 6 3.3929 -3.6456 -2.9885 24 6 3.6423 -3.0333 -1.6062 25 1 -0.3633 0.0031 1.0276 26 1 -0.3633 0.8884 -0.5165 27 1 -0.3633 -0.8915 -0.5111 28 1 4.4497 1.4060 -0.0127 29 1 4.5890 -1.2110 -0.0086 30 1 1.2786 -4.9827 -0.0609 31 1 3.0103 -5.4026 -0.1361 32 1 1.8636 -6.4809 -2.0101 33 1 1.1356 -4.9319 -2.5005 34 1 2.8871 -6.7993 -4.0392 35 1 2.3579 -5.2639 -4.7678 36 1 3.7640 -7.1538 -7.5984 37 1 4.2508 -3.4518 -3.6323 38 1 2.5001 -3.2005 -3.4277 39 1 4.5892 -3.3991 -1.2090 40 1 3.6714 -1.9466 -1.6868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602208578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:45 Heat of formation + Delta-G solvation = 20.618888 kcal Electronic energy + Delta-G solvation = -21711.695184 eV Core-core repulsion = 18527.263696 eV Total energy + Delta-G solvation = -3184.431488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.35015 -39.32350 -37.23953 -34.26992 -32.44213 -31.70242 -31.47465 -30.25061 -28.18982 -26.53304 -25.34859 -23.31056 -22.70800 -21.39328 -20.80230 -19.89825 -18.09186 -17.66463 -16.33656 -16.16942 -15.47310 -15.15802 -14.67489 -14.42624 -14.31246 -13.84555 -13.81379 -13.52370 -13.40149 -12.93421 -12.84247 -12.69396 -12.47125 -12.11616 -11.83290 -11.67131 -11.20779 -10.98316 -10.87748 -10.66793 -10.54538 -10.46384 -9.83524 -9.59560 -9.24622 -8.79871 -8.45275 -8.35437 -8.15574 -7.24542 -6.03027 -4.04819 1.85822 2.38432 2.99626 3.32892 3.35552 3.37354 3.39827 3.58158 4.41761 4.71543 4.82288 4.92448 5.04290 5.10589 5.32373 5.42451 5.47955 5.50407 5.54298 5.69389 5.78407 5.82165 5.84193 5.91062 5.97344 6.08388 6.17235 6.37968 6.55853 6.58393 6.67757 6.80393 6.93537 7.28418 7.33002 7.34060 7.75615 7.81438 8.07301 8.18493 8.52296 8.53885 9.02281 9.59395 11.07852 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.004213 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.163176 B = 6644.868550 C = 7294.134545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.090 3.910 3 N -0.555 5.555 4 H 0.414 0.586 5 C -0.019 4.019 6 C -0.165 4.165 7 C -0.223 4.223 8 C 0.590 3.410 9 O -0.559 6.559 10 N -0.602 5.602 11 C 0.119 3.881 12 C 0.042 3.958 13 N -0.535 5.535 14 C 0.193 3.807 15 C -0.509 4.509 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.051 3.949 24 C 0.107 3.893 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.169 0.831 29 H 0.148 0.852 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.025 0.975 34 H 0.031 0.969 35 H -0.010 1.010 36 H 0.262 0.738 37 H 0.095 0.905 38 H 0.022 0.978 39 H 0.071 0.929 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 15.734 12.791 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.027 4.027 3 N -0.151 5.151 4 H 0.250 0.750 5 C -0.146 4.146 6 C -0.189 4.189 7 C -0.233 4.233 8 C 0.380 3.620 9 O -0.439 6.439 10 N -0.334 5.334 11 C -0.004 4.004 12 C -0.088 4.088 13 N -0.261 5.261 14 C 0.068 3.932 15 C -0.547 4.547 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.078 4.078 24 C -0.016 4.016 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.186 0.814 29 H 0.165 0.835 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.008 0.992 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.041 0.959 39 H 0.089 0.911 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.439 15.372 13.198 20.407 hybrid contribution 0.238 0.715 -1.155 1.379 sum -2.201 16.087 12.042 20.215 Atomic orbital electron populations 1.20405 0.87331 1.03375 1.03363 1.20204 0.93495 0.85695 1.03307 1.41516 1.06226 1.08205 1.59110 0.74995 1.21714 0.85600 0.96419 1.10871 1.22104 0.95801 0.93458 1.07566 1.20140 0.93499 0.92078 1.17598 1.17439 0.81794 0.84199 0.78596 1.90719 1.27544 1.81320 1.44298 1.48015 1.35035 1.07178 1.43178 1.21730 1.01495 0.79695 0.97452 1.22393 0.92601 1.00581 0.93202 1.62084 1.35755 1.08603 1.19623 1.19719 0.96846 0.94110 0.82490 1.21111 0.97367 1.35892 1.00340 0.91853 1.24993 0.96890 0.95334 0.97353 1.69955 1.31321 1.37343 1.15178 0.86558 0.84021 0.78227 0.78569 1.20132 1.21399 1.20292 1.22337 1.01417 0.89119 0.94965 1.22187 0.89246 1.00175 0.89955 0.90251 0.91791 0.89551 0.81381 0.83454 0.89465 0.91084 0.90196 0.95631 0.95072 0.99186 0.92860 0.88677 0.95937 0.91118 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 9.86 36.01 0.35 -0.52 16 2 C 0.09 1.05 7.17 -81.88 -0.59 0.47 16 3 N -0.55 -4.74 5.90 -9.11 -0.05 -4.80 16 4 H 0.41 2.07 8.96 -40.82 -0.37 1.70 16 5 C -0.02 -0.17 11.89 -16.83 -0.20 -0.37 16 6 C -0.16 -1.91 8.70 -37.50 -0.33 -2.24 16 7 C -0.22 -3.16 5.36 -103.35 -0.55 -3.72 16 8 C 0.59 10.00 7.34 -12.59 -0.09 9.91 16 9 O -0.56 -10.76 15.74 5.26 0.08 -10.68 16 10 N -0.60 -10.03 3.01 -173.79 -0.52 -10.55 16 11 C 0.12 1.99 6.61 -3.60 -0.02 1.96 16 12 C 0.04 0.78 5.62 -3.70 -0.02 0.76 16 13 N -0.54 -11.51 4.62 -235.77 -1.09 -12.60 16 14 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 15 C -0.51 -14.03 8.41 -34.44 -0.29 -14.32 16 16 H 0.06 1.71 7.13 -52.48 -0.37 1.33 16 17 C 0.06 1.56 5.46 -17.81 -0.10 1.46 16 18 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 19 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 C 0.05 0.98 5.46 -3.70 -0.02 0.96 16 24 C 0.11 1.68 5.59 -3.60 -0.02 1.66 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 1.05 7.62 -51.93 -0.40 0.65 16 28 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 29 H 0.15 1.57 7.39 -52.48 -0.39 1.18 16 30 H 0.09 1.44 7.04 -51.93 -0.37 1.07 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.44 7.99 -51.93 -0.41 1.03 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 35 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.10 1.92 6.67 -51.93 -0.35 1.57 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.28 4.87 -51.93 -0.25 1.03 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -33.36 324.58 -8.71 -42.07 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.83 Total: 0.19 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.90 Total: 1.02 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.93 Total: -53.79 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.36 -8.71 -42.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.685 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds