Wall clock time and date at job start Mon Mar 30 2020 01:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34656 * 125.80258 * 2 1 4 4 H 0.97005 * 124.85242 * 359.97438 * 3 2 1 5 5 C 1.36445 * 110.29784 * 180.29991 * 3 2 1 6 6 C 1.34480 * 108.85833 * 359.72142 * 5 3 2 7 7 C 1.36772 * 125.80087 * 179.82275 * 2 1 3 8 8 C 1.47261 * 126.94228 * 359.97438 * 7 2 1 9 9 O 1.21623 * 120.00083 * 321.65976 * 8 7 2 10 10 N 1.34781 * 119.99910 * 141.65848 * 8 7 2 11 11 C 1.47078 * 120.88319 * 174.39599 * 10 8 7 12 12 C 1.53240 * 108.52111 * 128.83964 * 11 10 8 13 13 N 1.46899 * 109.33793 * 53.82950 * 12 11 10 14 14 C 1.46903 * 110.99769 * 172.74753 * 13 12 11 15 15 C 1.50694 * 109.47072 * 190.00372 * 14 13 12 16 16 H 1.08003 * 120.00099 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00312 * 180.02562 * 15 14 13 18 18 N 1.31524 * 119.99638 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00353 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47109 * 59.99909 * 19 17 15 21 21 H 1.48507 * 109.47093 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47155 * 299.99610 * 19 17 15 23 23 C 1.46900 * 111.27295 * 296.89529 * 13 12 11 24 24 C 1.47081 * 120.88062 * 354.42228 * 10 8 7 25 25 H 1.08998 * 109.47013 * 270.17249 * 1 2 3 26 26 H 1.08999 * 109.46892 * 30.17112 * 1 2 3 27 27 H 1.08996 * 109.47058 * 150.17219 * 1 2 3 28 28 H 1.08005 * 125.57075 * 179.70379 * 5 3 2 29 29 H 1.08007 * 126.83528 * 180.02562 * 6 5 3 30 30 H 1.09006 * 109.62349 * 9.13180 * 11 10 8 31 31 H 1.09000 * 109.63130 * 248.55322 * 11 10 8 32 32 H 1.08995 * 109.49072 * 173.79250 * 12 11 10 33 33 H 1.09001 * 109.48937 * 293.87138 * 12 11 10 34 34 H 1.09001 * 109.47106 * 310.00269 * 14 13 12 35 35 H 1.08999 * 109.47318 * 70.00102 * 14 13 12 36 36 H 0.96992 * 119.99409 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.49162 * 183.06248 * 23 13 12 38 38 H 1.08998 * 109.49166 * 303.14821 * 23 13 12 39 39 H 1.09004 * 109.63011 * 111.44883 * 24 10 8 40 40 H 1.08999 * 109.63119 * 350.87521 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0074 -0.0004 5 6 3.6095 0.7274 -0.0067 6 6 3.6882 -0.6151 -0.0050 7 6 2.3071 -1.1093 0.0034 8 6 1.8702 -2.5156 0.0083 9 8 0.9011 -2.8491 0.6632 10 7 2.5443 -3.4332 -0.7130 11 6 2.2019 -4.8610 -0.6273 12 6 2.0092 -5.4014 -2.0482 13 7 3.2009 -5.0954 -2.8509 14 6 3.1300 -5.7444 -4.1669 15 6 4.4606 -5.6160 -4.8625 16 1 5.2771 -5.1032 -4.3759 17 6 4.6354 -6.1522 -6.1207 18 7 3.6409 -6.7762 -6.7135 19 14 6.2845 -5.9925 -6.9833 20 1 7.3367 -6.6472 -6.1650 21 1 6.2125 -6.6475 -8.3142 22 1 6.6151 -4.5552 -7.1569 23 6 3.3929 -3.6456 -2.9885 24 6 3.6423 -3.0333 -1.6062 25 1 -0.3633 0.0031 1.0276 26 1 -0.3633 0.8884 -0.5165 27 1 -0.3633 -0.8915 -0.5111 28 1 4.4497 1.4060 -0.0127 29 1 4.5890 -1.2110 -0.0086 30 1 1.2786 -4.9827 -0.0609 31 1 3.0103 -5.4026 -0.1361 32 1 1.8636 -6.4809 -2.0101 33 1 1.1356 -4.9319 -2.5005 34 1 2.8871 -6.7993 -4.0392 35 1 2.3579 -5.2639 -4.7678 36 1 3.7640 -7.1538 -7.5984 37 1 4.2508 -3.4518 -3.6323 38 1 2.5001 -3.2005 -3.4277 39 1 4.5892 -3.3991 -1.2090 40 1 3.6714 -1.9466 -1.6868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602208578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:45 Heat of formation + Delta-G solvation = -2.895279 kcal Electronic energy + Delta-G solvation = -21712.714835 eV Core-core repulsion = 18527.263696 eV Total energy + Delta-G solvation = -3185.451139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.21967 -40.64155 -38.78013 -35.92238 -34.40170 -32.70114 -32.50646 -31.45515 -29.95885 -27.72240 -26.81355 -24.75068 -24.26159 -23.00738 -21.61637 -21.30199 -19.30103 -18.53763 -18.47110 -17.43399 -16.71093 -16.62745 -16.29567 -15.98935 -15.43218 -15.38065 -15.28710 -14.79338 -14.45533 -14.28001 -13.97927 -13.76728 -13.59080 -13.44274 -13.37867 -13.00809 -12.74384 -12.55934 -12.53629 -12.33992 -12.29245 -12.11195 -11.72462 -11.28737 -10.90711 -10.59455 -9.79038 -9.59459 -9.10027 -9.02026 -8.18505 -6.29169 0.86224 1.44551 1.48074 1.55754 1.58215 1.96764 2.34972 2.42612 2.48467 3.13847 3.25253 3.75635 3.92907 4.05901 4.09412 4.25140 4.28809 4.34140 4.42416 4.45079 4.60577 4.67587 4.68878 4.76154 4.86163 4.94520 4.99901 5.02939 5.08157 5.18636 5.21143 5.26128 5.54051 5.65316 5.82906 6.02854 6.03793 6.25192 6.50737 6.57545 6.73194 6.86268 7.24309 7.40767 8.92899 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.004213 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.163176 B = 6644.868550 C = 7294.134545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.088 3.912 3 N -0.537 5.537 4 H 0.434 0.566 5 C 0.005 3.995 6 C -0.190 4.190 7 C -0.265 4.265 8 C 0.586 3.414 9 O -0.591 6.591 10 N -0.607 5.607 11 C 0.127 3.873 12 C 0.044 3.956 13 N -0.536 5.536 14 C 0.208 3.792 15 C -0.522 4.522 16 H 0.070 0.930 17 C 0.001 3.999 18 N -0.938 5.938 19 Si 0.972 3.028 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.264 1.264 23 C 0.053 3.947 24 C 0.123 3.877 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.210 0.790 29 H 0.153 0.847 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.011 0.989 34 H 0.005 0.995 35 H -0.043 1.043 36 H 0.264 0.736 37 H 0.087 0.913 38 H 0.007 0.993 39 H 0.083 0.917 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.325 18.387 13.485 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.031 4.031 3 N -0.134 5.134 4 H 0.274 0.726 5 C -0.123 4.123 6 C -0.214 4.214 7 C -0.275 4.275 8 C 0.378 3.622 9 O -0.474 6.474 10 N -0.339 5.339 11 C 0.004 3.996 12 C -0.085 4.085 13 N -0.261 5.261 14 C 0.081 3.919 15 C -0.560 4.560 16 H 0.088 0.912 17 C -0.197 4.197 18 N -0.578 5.578 19 Si 0.796 3.204 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.189 1.189 23 C -0.076 4.076 24 C 0.000 4.000 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.077 0.923 28 H 0.227 0.773 29 H 0.171 0.829 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.030 0.970 34 H 0.024 0.976 35 H -0.025 1.025 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.025 0.975 39 H 0.101 0.899 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.479 18.071 13.913 22.812 hybrid contribution -0.444 -0.057 -1.335 1.408 sum -0.922 18.014 12.578 21.990 Atomic orbital electron populations 1.20399 0.86722 1.03555 1.03650 1.20346 0.94147 0.86111 1.02524 1.41535 1.05948 1.08547 1.57401 0.72633 1.22308 0.86426 0.96063 1.07533 1.22256 0.94799 0.94838 1.09475 1.20152 0.95606 0.90951 1.20839 1.17945 0.81057 0.85395 0.77784 1.90684 1.28974 1.82076 1.45662 1.48101 1.35350 1.07046 1.43414 1.21609 1.02106 0.80283 0.95588 1.22427 0.91064 1.00924 0.94063 1.62037 1.36929 1.09953 1.17205 1.19390 0.95557 0.92671 0.84243 1.21425 0.97858 1.35898 1.00848 0.91184 1.25956 1.00919 0.94700 0.98138 1.70101 1.33765 1.38296 1.15633 0.85393 0.78994 0.78840 0.77136 1.19159 1.21230 1.18880 1.22370 1.00285 0.87659 0.97323 1.22121 0.89284 1.01188 0.87365 0.89915 0.88650 0.92271 0.77330 0.82912 0.89307 0.89898 0.89868 0.97027 0.97650 1.02534 0.92741 0.89495 0.97466 0.89873 0.86812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.63 9.86 71.24 0.70 -0.93 16 2 C 0.09 1.88 7.17 41.78 0.30 2.18 16 3 N -0.54 -7.23 5.90 -182.73 -1.08 -8.31 16 4 H 0.43 2.47 8.96 -92.70 -0.83 1.64 16 5 C 0.00 0.06 11.89 83.12 0.99 1.05 16 6 C -0.19 -3.92 8.70 23.62 0.21 -3.71 16 7 C -0.27 -7.21 5.36 -19.04 -0.10 -7.31 16 8 C 0.59 19.91 7.34 86.61 0.64 20.55 16 9 O -0.59 -23.26 15.74 -4.10 -0.06 -23.32 16 10 N -0.61 -20.15 3.01 -821.99 -2.47 -22.62 16 11 C 0.13 4.28 6.61 86.35 0.57 4.85 16 12 C 0.04 1.72 5.62 86.38 0.49 2.21 16 13 N -0.54 -23.64 4.62 -899.84 -4.16 -27.79 16 14 C 0.21 11.23 4.72 85.55 0.40 11.64 16 15 C -0.52 -29.20 8.41 25.60 0.22 -28.99 16 16 H 0.07 3.75 7.13 -2.91 -0.02 3.73 16 17 C 0.00 0.04 5.46 84.65 0.46 0.50 16 18 N -0.94 -56.65 13.29 21.45 0.28 -56.36 16 19 Si 0.97 43.51 29.54 68.60 2.03 45.53 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 C 0.05 2.04 5.46 86.38 0.47 2.52 16 24 C 0.12 3.75 5.59 86.35 0.48 4.23 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.06 1.46 7.62 -2.39 -0.02 1.44 16 28 H 0.21 1.11 8.06 -2.91 -0.02 1.09 16 29 H 0.15 2.87 7.39 -2.91 -0.02 2.84 16 30 H 0.09 2.99 7.04 -2.38 -0.02 2.97 16 31 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.08 3.13 7.99 -2.39 -0.02 3.11 16 33 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.01 0.31 7.97 -2.39 -0.02 0.30 16 35 H -0.04 -2.57 8.12 -2.39 -0.02 -2.59 16 36 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.09 3.51 6.67 -2.39 -0.02 3.50 16 38 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.11 3.02 4.87 -2.39 -0.01 3.00 16 Total: -1.00 -74.35 324.58 0.57 -73.77 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.22 Total: 10.32 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.82 Total: 8.79 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -7.42 Total: -115.09 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.06 Total: -23.32 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -74.35 0.57 -73.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.875 kcal (2) G-P(sol) polarization free energy of solvation -74.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds