Wall clock time and date at job start Mon Mar 30 2020 01:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38220 * 120.41264 * 2 1 4 4 C 1.39486 * 118.33646 * 179.97438 * 3 2 1 5 5 N 1.39051 * 120.51800 * 180.02562 * 4 3 2 6 6 C 1.34785 * 119.99618 * 185.07916 * 5 4 3 7 7 O 1.21259 * 120.00134 * 355.18595 * 6 5 4 8 8 C 1.50700 * 119.99861 * 175.19223 * 6 5 4 9 9 C 1.52991 * 109.47064 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47158 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47396 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47286 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99925 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99774 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00118 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99576 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47226 * 90.00212 * 16 14 12 18 18 H 1.48496 * 109.46771 * 209.99949 * 16 14 12 19 19 H 1.48500 * 109.47057 * 329.99610 * 16 14 12 20 20 N 1.32922 * 118.95896 * 0.27145 * 4 3 2 21 21 C 1.31747 * 120.69944 * 359.44737 * 20 4 3 22 22 C 1.50694 * 119.07983 * 180.28421 * 21 20 4 23 23 N 1.31797 * 121.82965 * 0.57137 * 21 20 4 24 24 H 1.08995 * 109.47344 * 89.99419 * 1 2 3 25 25 H 1.08991 * 109.47408 * 210.00110 * 1 2 3 26 26 H 1.09008 * 109.46557 * 329.99924 * 1 2 3 27 27 H 1.08004 * 120.82617 * 359.95534 * 3 2 1 28 28 H 0.97000 * 120.00243 * 5.36156 * 5 4 3 29 29 H 1.08997 * 109.46974 * 300.00223 * 8 6 5 30 30 H 1.09006 * 109.46993 * 59.99662 * 8 6 5 31 31 H 1.09006 * 109.47250 * 299.99712 * 9 8 6 32 32 H 1.08992 * 109.47415 * 60.00001 * 9 8 6 33 33 H 1.09006 * 109.46774 * 299.99966 * 10 9 8 34 34 H 1.08999 * 109.47620 * 59.99567 * 10 9 8 35 35 H 1.08997 * 109.47292 * 299.99996 * 11 10 9 36 36 H 1.09007 * 109.46925 * 59.99564 * 11 10 9 37 37 H 0.96994 * 119.99610 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47449 * 270.27346 * 22 21 20 39 39 H 1.09000 * 109.47386 * 30.27902 * 22 21 20 40 40 H 1.09006 * 109.46763 * 150.27386 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.1920 0.0000 4 6 3.6007 1.1415 0.0005 5 7 4.3497 2.3130 0.0011 6 6 5.6924 2.2544 -0.1017 7 8 6.2537 1.1796 -0.1067 8 6 6.4959 3.5247 -0.2103 9 6 7.9828 3.1802 -0.3147 10 6 8.7987 4.4698 -0.4243 11 6 10.2858 4.1254 -0.5281 12 6 11.0893 5.3957 -0.6367 13 1 10.5894 6.3529 -0.6317 14 6 12.4628 5.3357 -0.7413 15 7 13.0717 4.1700 -0.7469 16 14 13.4588 6.9104 -0.8752 17 1 13.8313 7.3776 0.4843 18 1 14.6900 6.6517 -1.6642 19 1 12.6471 7.9535 -1.5521 20 7 4.2017 -0.0441 -0.0045 21 6 3.4954 -1.1563 0.0011 22 6 4.2146 -2.4805 0.0016 23 7 2.1776 -1.1428 0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5139 27 1 1.6870 2.1388 -0.0007 28 1 3.9063 3.1722 0.0796 29 1 6.1874 4.0748 -1.0992 30 1 6.3260 4.1388 0.6742 31 1 8.2916 2.6298 0.5741 32 1 8.1523 2.5663 -1.1993 33 1 8.4900 5.0206 -1.3129 34 1 8.6292 5.0834 0.4605 35 1 10.5941 3.5749 0.3606 36 1 10.4557 3.5116 -1.4128 37 1 14.0379 4.1279 -0.8209 38 1 4.3884 -2.8001 -1.0259 39 1 5.1699 -2.3751 0.5158 40 1 3.6056 -3.2244 0.5154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602405196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:48 Heat of formation + Delta-G solvation = -7.571910 kcal Electronic energy + Delta-G solvation = -20184.676175 eV Core-core repulsion = 16999.022241 eV Total energy + Delta-G solvation = -3185.653933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51317 -39.69510 -35.85635 -34.86812 -34.58911 -32.73491 -32.08720 -29.75243 -29.40787 -28.32538 -25.91648 -23.64955 -22.66995 -21.95162 -20.55653 -20.01816 -17.86529 -17.74789 -16.29482 -16.12888 -16.06572 -15.72642 -15.39636 -14.63748 -14.44048 -14.19115 -13.92201 -13.67404 -13.19256 -12.83858 -12.80597 -12.63954 -12.42899 -12.22433 -11.75615 -11.63163 -11.35213 -10.99842 -10.99407 -10.57759 -10.52299 -10.44748 -10.21187 -9.97437 -9.63559 -9.31878 -9.08545 -8.97979 -8.96487 -8.31098 -5.95766 -3.98418 0.69215 0.92153 2.51952 2.61409 3.33572 3.39663 3.42648 3.60772 3.73175 3.86825 4.35521 4.48449 4.65755 4.76253 4.88269 5.10995 5.13878 5.20539 5.24110 5.26850 5.39560 5.42656 5.46361 5.56041 5.73335 5.75783 5.95590 6.08298 6.23632 6.37971 6.50648 6.62045 6.79747 6.98042 7.16589 7.20933 7.73187 7.88704 7.95035 8.05398 8.14670 8.46859 9.09259 9.65232 11.15546 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.044147 B = 0.002491 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.093432 B =11238.996319 C =11825.154713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.196 3.804 3 C -0.278 4.278 4 C 0.414 3.586 5 N -0.662 5.662 6 C 0.499 3.501 7 O -0.458 6.458 8 C -0.136 4.136 9 C -0.105 4.105 10 C -0.110 4.110 11 C 0.019 3.981 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.516 5.516 21 C 0.351 3.649 22 C -0.084 4.084 23 N -0.548 5.548 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.145 0.855 28 H 0.420 0.580 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.129 -6.557 1.930 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.052 3.948 3 C -0.304 4.304 4 C 0.173 3.827 5 N -0.310 5.310 6 C 0.286 3.714 7 O -0.324 6.324 8 C -0.176 4.176 9 C -0.143 4.143 10 C -0.147 4.147 11 C -0.018 4.018 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 N -0.238 5.238 21 C 0.083 3.917 22 C -0.143 4.143 23 N -0.267 5.267 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.163 0.837 28 H 0.257 0.743 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.927 -8.197 1.883 27.257 hybrid contribution -0.055 2.286 -0.057 2.288 sum -25.982 -5.910 1.826 26.708 Atomic orbital electron populations 1.20756 0.87755 1.03974 1.03633 1.21446 0.97357 0.87492 0.88546 1.22031 0.93195 1.01230 1.13967 1.18770 0.87946 0.87166 0.88783 1.43956 1.08036 1.06957 1.72013 1.21552 0.80921 0.93057 0.75888 1.90826 1.68950 1.30554 1.42096 1.21849 0.97499 0.93912 1.04290 1.21487 0.89999 0.99676 1.03110 1.21646 0.98391 0.94601 1.00090 1.19098 0.88596 0.96751 0.97315 1.21272 0.91598 0.92976 1.50047 0.92756 1.25050 0.98082 0.95994 0.95488 1.69974 1.09132 1.23625 1.50680 0.86605 0.79706 0.83723 0.78013 1.20708 1.21252 1.19934 1.68335 1.40175 0.96940 1.18336 1.23231 0.86131 0.94296 0.88015 1.20575 1.00215 0.89447 1.04023 1.68131 1.09665 1.30054 1.18892 0.89704 0.89880 0.90201 0.83678 0.74322 0.88684 0.88713 0.91607 0.91621 0.93408 0.93405 0.96560 0.96559 0.93025 0.89506 0.89237 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 10.22 36.01 0.37 -0.21 16 2 C 0.20 1.90 6.82 -82.31 -0.56 1.34 16 3 C -0.28 -2.56 9.72 -39.12 -0.38 -2.94 16 4 C 0.41 5.12 7.45 -154.39 -1.15 3.97 16 5 N -0.66 -6.98 5.38 -11.28 -0.06 -7.04 16 6 C 0.50 6.96 7.79 -10.98 -0.09 6.87 16 7 O -0.46 -8.49 14.29 5.58 0.08 -8.41 16 8 C -0.14 -1.69 5.70 -27.89 -0.16 -1.85 16 9 C -0.10 -1.82 4.50 -26.74 -0.12 -1.94 16 10 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 11 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 12 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 16 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 N -0.52 -7.77 7.95 -9.89 -0.08 -7.85 16 21 C 0.35 4.62 7.64 -157.24 -1.20 3.42 16 22 C -0.08 -0.86 10.32 36.00 0.37 -0.48 16 23 N -0.55 -6.58 10.27 -7.06 -0.07 -6.65 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.28 8.09 -51.92 -0.42 -0.14 16 27 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 28 H 0.42 2.53 8.72 -40.82 -0.36 2.17 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -36.64 343.57 -9.08 -45.72 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -6.23 Total: -3.44 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -3.61 Total: -7.57 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.52 Total: -48.33 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.08 Total: -8.41 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.64 -9.08 -45.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602405196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.143 kcal (2) G-P(sol) polarization free energy of solvation -36.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds