Wall clock time and date at job start Mon Mar 30 2020 01:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38220 * 120.41264 * 2 1 4 4 C 1.39486 * 118.33646 * 179.97438 * 3 2 1 5 5 N 1.39051 * 120.51800 * 180.02562 * 4 3 2 6 6 C 1.34785 * 119.99618 * 185.07916 * 5 4 3 7 7 O 1.21259 * 120.00134 * 355.18595 * 6 5 4 8 8 C 1.50700 * 119.99861 * 175.19223 * 6 5 4 9 9 C 1.52991 * 109.47064 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47158 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47396 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47286 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99925 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99774 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00118 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99576 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47226 * 90.00212 * 16 14 12 18 18 H 1.48496 * 109.46771 * 209.99949 * 16 14 12 19 19 H 1.48500 * 109.47057 * 329.99610 * 16 14 12 20 20 N 1.32922 * 118.95896 * 0.27145 * 4 3 2 21 21 C 1.31747 * 120.69944 * 359.44737 * 20 4 3 22 22 C 1.50694 * 119.07983 * 180.28421 * 21 20 4 23 23 N 1.31797 * 121.82965 * 0.57137 * 21 20 4 24 24 H 1.08995 * 109.47344 * 89.99419 * 1 2 3 25 25 H 1.08991 * 109.47408 * 210.00110 * 1 2 3 26 26 H 1.09008 * 109.46557 * 329.99924 * 1 2 3 27 27 H 1.08004 * 120.82617 * 359.95534 * 3 2 1 28 28 H 0.97000 * 120.00243 * 5.36156 * 5 4 3 29 29 H 1.08997 * 109.46974 * 300.00223 * 8 6 5 30 30 H 1.09006 * 109.46993 * 59.99662 * 8 6 5 31 31 H 1.09006 * 109.47250 * 299.99712 * 9 8 6 32 32 H 1.08992 * 109.47415 * 60.00001 * 9 8 6 33 33 H 1.09006 * 109.46774 * 299.99966 * 10 9 8 34 34 H 1.08999 * 109.47620 * 59.99567 * 10 9 8 35 35 H 1.08997 * 109.47292 * 299.99996 * 11 10 9 36 36 H 1.09007 * 109.46925 * 59.99564 * 11 10 9 37 37 H 0.96994 * 119.99610 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47449 * 270.27346 * 22 21 20 39 39 H 1.09000 * 109.47386 * 30.27902 * 22 21 20 40 40 H 1.09006 * 109.46763 * 150.27386 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.1920 0.0000 4 6 3.6007 1.1415 0.0005 5 7 4.3497 2.3130 0.0011 6 6 5.6924 2.2544 -0.1017 7 8 6.2537 1.1796 -0.1067 8 6 6.4959 3.5247 -0.2103 9 6 7.9828 3.1802 -0.3147 10 6 8.7987 4.4698 -0.4243 11 6 10.2858 4.1254 -0.5281 12 6 11.0893 5.3957 -0.6367 13 1 10.5894 6.3529 -0.6317 14 6 12.4628 5.3357 -0.7413 15 7 13.0717 4.1700 -0.7469 16 14 13.4588 6.9104 -0.8752 17 1 13.8313 7.3776 0.4843 18 1 14.6900 6.6517 -1.6642 19 1 12.6471 7.9535 -1.5521 20 7 4.2017 -0.0441 -0.0045 21 6 3.4954 -1.1563 0.0011 22 6 4.2146 -2.4805 0.0016 23 7 2.1776 -1.1428 0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5139 27 1 1.6870 2.1388 -0.0007 28 1 3.9063 3.1722 0.0796 29 1 6.1874 4.0748 -1.0992 30 1 6.3260 4.1388 0.6742 31 1 8.2916 2.6298 0.5741 32 1 8.1523 2.5663 -1.1993 33 1 8.4900 5.0206 -1.3129 34 1 8.6292 5.0834 0.4605 35 1 10.5941 3.5749 0.3606 36 1 10.4557 3.5116 -1.4128 37 1 14.0379 4.1279 -0.8209 38 1 4.3884 -2.8001 -1.0259 39 1 5.1699 -2.3751 0.5158 40 1 3.6056 -3.2244 0.5154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602405196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:48 Heat of formation + Delta-G solvation = -31.579696 kcal Electronic energy + Delta-G solvation = -20185.717230 eV Core-core repulsion = 16999.022241 eV Total energy + Delta-G solvation = -3186.694989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.37341 -40.72527 -36.98011 -36.40543 -35.35704 -34.62873 -33.13205 -31.38737 -30.07932 -29.11680 -27.60635 -25.02267 -23.58122 -23.22288 -21.82186 -21.45158 -18.80227 -18.68996 -18.37027 -17.20370 -17.10547 -16.51184 -16.44390 -16.40424 -15.54965 -15.46827 -14.99669 -14.54234 -14.23252 -14.01407 -13.90889 -13.61463 -13.39870 -13.36154 -13.28836 -13.06011 -12.82228 -12.34794 -12.24441 -12.18082 -12.12835 -11.79914 -11.39657 -11.37976 -11.25523 -11.02495 -10.82364 -10.55140 -10.01491 -9.80299 -8.18763 -6.30964 -0.14105 0.09911 1.40345 1.42687 1.53677 1.59232 1.67853 2.41811 2.76432 2.96548 3.08741 3.14014 3.57296 3.80927 3.99871 4.09959 4.13198 4.22433 4.41997 4.60587 4.63972 4.67284 4.67841 4.78428 4.80020 4.82260 4.85903 4.89869 5.12435 5.17378 5.22373 5.33003 5.37520 5.56331 5.59681 5.78105 5.82756 5.88325 6.24996 6.39187 6.87917 7.01415 7.28709 7.38727 8.93519 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.044147 B = 0.002491 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.093432 B =11238.996319 C =11825.154713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.183 3.817 3 C -0.259 4.259 4 C 0.385 3.615 5 N -0.643 5.643 6 C 0.501 3.499 7 O -0.517 6.517 8 C -0.121 4.121 9 C -0.098 4.098 10 C -0.094 4.094 11 C 0.017 3.983 12 C -0.540 4.540 13 H 0.068 0.932 14 C -0.009 4.009 15 N -0.939 5.939 16 Si 0.970 3.030 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.258 1.258 20 N -0.561 5.561 21 C 0.328 3.672 22 C -0.081 4.081 23 N -0.560 5.560 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.190 0.810 28 H 0.442 0.558 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.064 0.936 35 H -0.016 1.016 36 H -0.017 1.017 37 H 0.262 0.738 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.917 -3.730 1.964 30.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.039 3.961 3 C -0.284 4.284 4 C 0.145 3.855 5 N -0.293 5.293 6 C 0.289 3.711 7 O -0.387 6.387 8 C -0.161 4.161 9 C -0.136 4.136 10 C -0.132 4.132 11 C -0.020 4.020 12 C -0.578 4.578 13 H 0.086 0.914 14 C -0.206 4.206 15 N -0.579 5.579 16 Si 0.794 3.206 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.182 1.182 20 N -0.283 5.283 21 C 0.060 3.940 22 C -0.139 4.139 23 N -0.279 5.279 24 H 0.117 0.883 25 H 0.100 0.900 26 H 0.126 0.874 27 H 0.207 0.793 28 H 0.284 0.716 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.002 0.998 36 H 0.002 0.998 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -28.786 -5.327 1.923 29.338 hybrid contribution 0.736 1.356 -0.065 1.545 sum -28.050 -3.971 1.857 28.391 Atomic orbital electron populations 1.20883 0.84576 1.05314 1.04828 1.22255 0.99346 0.87078 0.87451 1.22433 0.91671 1.02985 1.11321 1.19180 0.89449 0.86886 0.89956 1.43649 1.06874 1.07747 1.70987 1.21769 0.81998 0.92588 0.74787 1.90820 1.70338 1.32529 1.45044 1.21716 0.93250 0.93718 1.07395 1.21267 0.93643 0.97670 1.01030 1.21434 0.94190 0.96072 1.01489 1.19069 0.93190 0.95480 0.94252 1.21759 0.92362 0.94005 1.49696 0.91422 1.26118 0.99650 0.99899 0.94916 1.70137 1.09568 1.26452 1.51756 0.85372 0.77755 0.79042 0.78412 1.19716 1.21060 1.18212 1.68269 1.41937 0.98431 1.19702 1.23580 0.86892 0.94643 0.88856 1.20595 0.99731 0.89187 1.04418 1.68199 1.09122 1.31504 1.19098 0.88349 0.90033 0.87398 0.79306 0.71604 0.85479 0.85348 0.93854 0.93942 0.91845 0.91775 0.99801 0.99828 0.92888 0.88958 0.90538 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.22 71.24 0.73 -0.04 16 2 C 0.18 3.14 6.82 42.45 0.29 3.43 16 3 C -0.26 -4.03 9.72 22.57 0.22 -3.81 16 4 C 0.38 9.09 7.45 132.98 0.99 10.08 16 5 N -0.64 -12.28 5.38 -308.00 -1.66 -13.93 16 6 C 0.50 13.58 7.79 87.66 0.68 14.27 16 7 O -0.52 -19.96 14.29 -2.97 -0.04 -20.00 16 8 C -0.12 -2.74 5.70 29.85 0.17 -2.57 16 9 C -0.10 -3.45 4.50 30.59 0.14 -3.31 16 10 C -0.09 -3.75 5.15 30.59 0.16 -3.60 16 11 C 0.02 0.94 4.97 29.85 0.15 1.09 16 12 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 13 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 14 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 15 N -0.94 -59.36 13.29 21.45 0.28 -59.08 16 16 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 N -0.56 -17.33 7.95 -185.20 -1.47 -18.80 16 21 C 0.33 8.87 7.64 138.76 1.06 9.93 16 22 C -0.08 -1.75 10.32 71.23 0.73 -1.02 16 23 N -0.56 -13.13 10.27 -176.24 -1.81 -14.94 16 24 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.11 0.26 8.09 -2.38 -0.02 0.24 16 27 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 28 H 0.44 3.71 8.72 -92.71 -0.81 2.90 16 29 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.13 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.04 1.69 8.10 -2.38 -0.02 1.67 16 32 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 33 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 35 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 36 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 37 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -84.92 343.57 3.57 -81.35 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 0.22 Total: 5.18 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 6.02 Total: -6.58 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -4.65 Total: -106.75 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.04 Total: -20.00 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -84.92 3.57 -81.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602405196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.772 kcal (2) G-P(sol) polarization free energy of solvation -84.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds