Wall clock time and date at job start Mon Mar 30 2020 02:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21305 * 120.00274 * 2 1 4 4 N 1.34778 * 120.00269 * 180.02562 * 2 1 3 5 5 C 1.40759 * 120.00332 * 185.66739 * 4 2 1 6 6 C 1.40253 * 126.08219 * 313.43519 * 5 4 2 7 7 C 1.50702 * 125.83170 * 0.02562 * 6 5 4 8 8 N 1.30832 * 108.33852 * 180.02562 * 6 5 4 9 9 N 1.40067 * 108.36553 * 359.74244 * 8 6 5 10 10 C 1.46501 * 126.05340 * 180.27291 * 9 8 6 11 11 C 1.53001 * 109.47054 * 270.21771 * 10 9 8 12 12 C 1.50699 * 115.54619 * 39.75726 * 11 10 9 13 13 H 1.08000 * 120.00569 * 265.13754 * 12 11 10 14 14 C 1.37883 * 120.00027 * 85.14333 * 12 11 10 15 15 N 1.31510 * 120.00153 * 0.10683 * 14 12 11 16 16 Si 1.86800 * 120.00080 * 180.11149 * 14 12 11 17 17 H 1.48500 * 109.47058 * 89.99547 * 16 14 12 18 18 H 1.48493 * 109.47192 * 209.99678 * 16 14 12 19 19 H 1.48501 * 109.47071 * 329.99672 * 16 14 12 20 20 C 1.52998 * 117.50339 * 254.04929 * 11 10 9 21 21 C 1.53003 * 117.49912 * 185.42402 * 11 10 9 22 22 C 1.35751 * 126.08017 * 133.45996 * 5 4 2 23 23 C 1.50703 * 126.21897 * 359.97438 * 22 5 4 24 24 H 1.09003 * 109.46997 * 239.99919 * 1 2 3 25 25 H 1.08999 * 109.47030 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47385 * 119.99986 * 1 2 3 27 27 H 0.97004 * 119.99591 * 5.67474 * 4 2 1 28 28 H 1.09000 * 109.46846 * 97.25051 * 7 6 5 29 29 H 1.08993 * 109.47334 * 217.24811 * 7 6 5 30 30 H 1.08999 * 109.47511 * 337.25027 * 7 6 5 31 31 H 1.08999 * 109.47419 * 30.22016 * 10 9 8 32 32 H 1.09004 * 109.47200 * 150.22681 * 10 9 8 33 33 H 0.96999 * 120.00345 * 185.04409 * 15 14 12 34 34 H 1.09000 * 117.49557 * 359.97438 * 20 11 10 35 35 H 1.09000 * 117.49944 * 145.02249 * 20 11 10 36 36 H 1.08996 * 117.49435 * 214.98134 * 21 11 10 37 37 H 1.08990 * 117.49855 * 0.02562 * 21 11 10 38 38 H 1.08996 * 109.46749 * 90.02791 * 23 22 5 39 39 H 1.09000 * 109.47022 * 330.03083 * 23 22 5 40 40 H 1.08996 * 109.47466 * 210.02542 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5833 -1.1702 0.1199 6 6 4.4750 -0.3527 -0.5897 7 6 4.0958 0.6843 -1.6154 8 7 5.6924 -0.6440 -0.2091 9 7 5.6223 -1.6526 0.7603 10 6 6.7597 -2.2642 1.4520 11 6 7.2501 -3.4748 0.6552 12 6 7.2612 -3.3061 -0.8423 13 1 6.4207 -3.6443 -1.4302 14 6 8.3444 -2.7198 -1.4620 15 7 9.3689 -2.3099 -0.7465 16 14 8.3569 -2.5078 -3.3179 17 1 7.7597 -1.1946 -3.6701 18 1 9.7556 -2.5643 -3.8132 19 1 7.5651 -3.5960 -3.9457 20 6 6.9234 -4.8637 1.2076 21 6 8.3556 -4.3298 1.2780 22 6 4.3133 -1.9654 0.9431 23 6 3.7697 -3.0022 1.8920 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3633 1.0277 0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 1.6994 -2.0052 -0.0840 28 1 4.0685 1.6673 -1.1453 29 1 4.8318 0.6863 -2.4193 30 1 3.1127 0.4492 -2.0234 31 1 7.5660 -1.5361 1.5396 32 1 6.4502 -2.5852 2.4467 33 1 10.0978 -1.8322 -1.1723 34 1 6.3595 -4.9150 2.1390 35 1 6.7164 -5.6557 0.4879 36 1 9.0906 -4.7705 0.6046 37 1 8.7331 -4.0301 2.2555 38 1 3.7008 -3.9622 1.3805 39 1 2.7793 -2.6998 2.2321 40 1 4.4359 -3.0946 2.7498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603422098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:21 Heat of formation + Delta-G solvation = 37.879409 kcal Electronic energy + Delta-G solvation = -22333.426878 eV Core-core repulsion = 19149.743862 eV Total energy + Delta-G solvation = -3183.683016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.22835 -40.15813 -38.44720 -35.56806 -34.45911 -33.91855 -32.15988 -30.37545 -30.07428 -27.58628 -27.24969 -25.98257 -22.89468 -22.25663 -21.43332 -20.75776 -20.03260 -18.29271 -17.84727 -17.60904 -16.75801 -16.34396 -16.21697 -15.96072 -15.22711 -14.80249 -14.70979 -14.52913 -14.06234 -14.00373 -13.69518 -13.41544 -13.27790 -13.21725 -13.07527 -12.94757 -12.91082 -12.75083 -12.69480 -12.43563 -11.97050 -11.63320 -11.46148 -10.94371 -10.82010 -10.64716 -10.45496 -9.98459 -9.71906 -8.64307 -8.11917 -6.17519 1.11391 1.29278 1.35522 1.38090 1.64288 1.76576 2.10036 2.40222 2.57488 3.21191 3.46189 3.84786 3.88782 4.08844 4.21905 4.27407 4.36810 4.51827 4.55317 4.64717 4.64905 4.75764 4.77485 4.81111 4.87865 4.90419 4.99800 5.01987 5.12268 5.19599 5.24112 5.36475 5.47670 5.57076 5.68277 5.74809 6.03302 6.30498 6.50285 6.74051 6.82581 7.09518 7.48950 7.50268 8.96493 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019212 B = 0.006500 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.039714 B = 4306.540100 C = 5235.247319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.495 3.505 3 O -0.583 6.583 4 N -0.629 5.629 5 C -0.040 4.040 6 C 0.044 3.956 7 C -0.038 4.038 8 N -0.310 5.310 9 N -0.328 5.328 10 C 0.180 3.820 11 C -0.007 4.007 12 C -0.474 4.474 13 H 0.029 0.971 14 C 0.046 3.954 15 N -0.901 5.901 16 Si 0.922 3.078 17 H -0.290 1.290 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.175 4.175 21 C -0.150 4.150 22 C 0.069 3.931 23 C -0.079 4.079 24 H 0.114 0.886 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.421 0.579 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.256 0.744 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.969 -2.381 5.901 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.285 3.715 3 O -0.462 6.462 4 N -0.279 5.279 5 C -0.145 4.145 6 C -0.123 4.123 7 C -0.096 4.096 8 N -0.133 5.133 9 N -0.109 5.109 10 C 0.059 3.941 11 C -0.008 4.008 12 C -0.512 4.512 13 H 0.048 0.952 14 C -0.155 4.155 15 N -0.540 5.540 16 Si 0.749 3.251 17 H -0.216 1.216 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.212 4.212 21 C -0.188 4.188 22 C -0.062 4.062 23 C -0.137 4.137 24 H 0.133 0.867 25 H 0.108 0.892 26 H 0.130 0.870 27 H 0.259 0.741 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.065 0.935 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.001 -1.412 5.813 17.083 hybrid contribution -0.069 -0.079 -1.414 1.418 sum -16.071 -1.491 4.399 16.729 Atomic orbital electron populations 1.21879 0.86938 1.06139 1.06605 1.21908 0.92351 0.82608 0.74656 1.90730 1.71939 1.33004 1.50496 1.42696 1.02195 1.10038 1.72937 1.17014 0.85267 1.06658 1.05526 1.22561 0.90268 0.99876 0.99614 1.19891 1.00150 0.95388 0.94208 1.77417 1.21162 1.07552 1.07184 1.48242 1.05139 1.27628 1.29927 1.21285 0.84904 0.95010 0.92902 1.19216 1.00406 0.87769 0.93393 1.20178 1.00921 1.39514 0.90631 0.95227 1.25260 0.95077 0.95249 0.99907 1.69995 1.08993 1.38700 1.36287 0.86121 0.77015 0.78018 0.83906 1.21644 1.20716 1.19699 1.23113 0.98392 0.97852 1.01833 1.22408 0.91347 1.05084 0.99973 1.21483 0.84320 1.00899 0.99525 1.20502 1.02020 0.95068 0.96138 0.86715 0.89220 0.86989 0.74104 0.91365 0.93347 0.90823 0.92363 0.87863 0.93522 0.87488 0.90874 0.92462 0.89862 0.89138 0.87984 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 10.32 71.23 0.74 -1.15 16 2 C 0.49 12.36 7.17 87.65 0.63 12.99 16 3 O -0.58 -20.76 13.65 -3.11 -0.04 -20.80 16 4 N -0.63 -15.66 5.40 -304.06 -1.64 -17.30 16 5 C -0.04 -1.45 6.31 37.62 0.24 -1.22 16 6 C 0.04 1.91 6.83 43.20 0.30 2.21 16 7 C -0.04 -1.48 8.55 71.24 0.61 -0.87 16 8 N -0.31 -15.51 12.30 -47.15 -0.58 -16.09 16 9 N -0.33 -14.32 3.02 -333.69 -1.01 -15.32 16 10 C 0.18 7.65 6.34 86.38 0.55 8.19 16 11 C -0.01 -0.30 1.81 -52.93 -0.10 -0.40 16 12 C -0.47 -25.91 7.94 25.60 0.20 -25.70 16 13 H 0.03 1.71 7.81 -2.91 -0.02 1.68 16 14 C 0.05 2.59 5.42 84.66 0.46 3.05 16 15 N -0.90 -52.52 12.74 21.45 0.27 -52.25 16 16 Si 0.92 46.74 29.54 68.60 2.03 48.77 16 17 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 18 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 19 H -0.27 -13.42 7.11 99.48 0.71 -12.72 16 20 C -0.17 -6.48 9.88 30.59 0.30 -6.18 16 21 C -0.15 -6.44 9.28 30.60 0.28 -6.15 16 22 C 0.07 2.41 6.98 41.37 0.29 2.70 16 23 C -0.08 -1.79 10.08 71.24 0.72 -1.07 16 24 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 25 H 0.09 1.16 8.12 -2.39 -0.02 1.14 16 26 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.42 6.89 8.83 -92.71 -0.82 6.08 16 28 H 0.07 2.72 7.53 -2.39 -0.02 2.70 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 2.58 7.01 -2.39 -0.02 2.56 16 31 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.10 3.43 6.88 -2.38 -0.02 3.41 16 33 H 0.26 14.58 8.32 -92.71 -0.77 13.81 16 34 H 0.11 3.08 8.08 -2.39 -0.02 3.06 16 35 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.08 1.65 7.11 -2.39 -0.02 1.64 16 Total: -1.00 -76.84 337.86 4.47 -72.38 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.23 Total: 14.23 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 5.21 Total: -13.61 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -2.95 Total: -100.97 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.04 Total: -20.80 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -76.84 4.47 -72.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603422098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.255 kcal (2) G-P(sol) polarization free energy of solvation -76.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds