Wall clock time and date at job start Mon Mar 30 2020 01:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.34488 * 125.56680 * 2 1 4 4 C 1.46690 * 106.32866 * 179.79867 * 3 2 1 5 5 C 1.47263 * 126.94031 * 180.23899 * 4 3 2 6 6 O 1.21622 * 119.99942 * 219.12675 * 5 4 3 7 7 N 1.34775 * 120.00019 * 39.12445 * 5 4 3 8 8 C 1.46971 * 120.59293 * 4.65441 * 7 5 4 9 9 C 1.53809 * 108.40097 * 124.75721 * 8 7 5 10 10 N 1.46968 * 108.58074 * 49.62993 * 9 8 7 11 11 C 1.36942 * 120.58982 * 124.62406 * 10 9 8 12 12 H 1.08001 * 119.99887 * 210.99359 * 11 10 9 13 13 C 1.38812 * 119.99758 * 30.99888 * 11 10 9 14 14 N 1.31620 * 120.00237 * 16.32437 * 13 11 10 15 15 Si 1.86806 * 119.99745 * 196.32318 * 13 11 10 16 16 H 1.48505 * 109.46721 * 60.00061 * 15 13 11 17 17 H 1.48494 * 109.46832 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47145 * 300.00156 * 15 13 11 19 19 C 1.46964 * 118.81567 * 304.65340 * 10 9 8 20 20 C 1.46965 * 120.59630 * 184.92841 * 7 5 4 21 21 C 1.36767 * 106.11711 * 0.36725 * 4 3 2 22 22 C 1.50696 * 125.80367 * 179.89546 * 21 4 3 23 23 N 1.34660 * 108.39645 * 359.63214 * 21 4 3 24 24 H 0.96997 * 124.85092 * 180.26283 * 23 21 4 25 25 H 1.09002 * 109.46721 * 269.98967 * 1 2 3 26 26 H 1.08996 * 109.47183 * 29.99562 * 1 2 3 27 27 H 1.08996 * 109.46510 * 150.00019 * 1 2 3 28 28 H 1.08002 * 126.83442 * 0.02700 * 3 2 1 29 29 H 1.09002 * 109.60313 * 244.53565 * 8 7 5 30 30 H 1.08993 * 109.60783 * 5.04410 * 8 7 5 31 31 H 1.09000 * 109.73953 * 289.84849 * 9 8 7 32 32 H 1.09000 * 109.53562 * 169.30091 * 9 8 7 33 33 H 0.96997 * 119.99540 * 180.02562 * 14 13 11 34 34 H 1.08998 * 109.60704 * 295.47891 * 19 10 9 35 35 H 1.08998 * 109.75250 * 175.05385 * 19 10 9 36 36 H 1.09000 * 109.60725 * 354.95156 * 20 7 5 37 37 H 1.08999 * 109.61310 * 115.46012 * 20 7 5 38 38 H 1.08999 * 109.47365 * 269.72039 * 22 21 4 39 39 H 1.09001 * 109.47178 * 149.71477 * 22 21 4 40 40 H 1.09001 * 109.46873 * 29.71397 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2894 1.0940 0.0000 4 6 3.6743 0.6106 0.0049 5 6 4.8977 1.4303 0.0117 6 8 5.8605 1.0912 -0.6496 7 7 4.9505 2.5563 0.7505 8 6 3.8343 2.9249 1.6328 9 6 4.3839 3.1182 3.0562 10 7 5.5561 4.0023 2.9896 11 6 5.6092 5.1468 3.7397 12 1 6.1490 6.0076 3.3738 13 6 4.9693 5.2004 4.9703 14 7 4.5920 4.0884 5.5650 15 14 4.6435 6.8508 5.7826 16 1 3.7863 7.6781 4.8960 17 1 3.9535 6.6363 7.0798 18 1 5.9325 7.5497 6.0177 19 6 6.6698 3.6365 2.1033 20 6 6.1225 3.4404 0.6840 21 6 3.5999 -0.7550 -0.0009 22 6 4.7723 -1.7018 -0.0011 23 7 2.3009 -1.1098 -0.0006 24 1 1.9759 -2.0237 -0.0004 25 1 -0.3633 -0.0002 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3632 -0.8900 -0.5138 28 1 1.9628 2.1234 0.0004 29 1 3.3829 3.8533 1.2829 30 1 3.0890 2.1296 1.6315 31 1 4.6763 2.1539 3.4720 32 1 3.6178 3.5730 3.6841 33 1 4.1445 4.1260 6.4247 34 1 7.1248 2.7092 2.4512 35 1 7.4154 4.4315 2.1013 36 1 6.8886 2.9856 0.0561 37 1 5.8302 4.4047 0.2682 38 1 5.0551 -1.9298 -1.0288 39 1 4.4958 -2.6226 0.5125 40 1 5.6141 -1.2378 0.5129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610397170.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:23 Heat of formation + Delta-G solvation = 34.565438 kcal Electronic energy + Delta-G solvation = -22076.553828 eV Core-core repulsion = 18892.727107 eV Total energy + Delta-G solvation = -3183.826721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25961 -38.94010 -36.53563 -33.73171 -32.62104 -31.72565 -30.64751 -29.83948 -29.17487 -26.92256 -24.85560 -23.51503 -22.88056 -21.67038 -20.34368 -19.78547 -18.01571 -17.00711 -16.38177 -15.58858 -15.23466 -15.02368 -14.63570 -14.27319 -13.75023 -13.56239 -13.45587 -13.29088 -13.21883 -13.04638 -12.93097 -12.53527 -12.20597 -12.12221 -12.05418 -11.52123 -11.37835 -11.22422 -10.76334 -10.65317 -10.42931 -10.14986 -9.95870 -9.75774 -9.30885 -8.58221 -8.48366 -8.09440 -7.85353 -6.58994 -5.79667 -3.26268 2.07065 2.51100 3.14605 3.38044 3.43595 3.44922 3.61443 3.88387 4.49376 4.81149 4.91246 5.09903 5.24836 5.28562 5.37068 5.42946 5.48560 5.61147 5.70125 5.74795 5.94495 5.97250 5.99118 6.04003 6.11260 6.24749 6.32538 6.37097 6.52475 6.57700 6.88313 6.91580 7.03589 7.11576 7.37307 7.52527 7.54425 7.78177 8.15266 8.44201 8.83149 9.18946 9.81123 10.40785 11.27804 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.005059 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.649295 B = 5533.083494 C = 6290.706355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.006 3.994 3 C -0.160 4.160 4 C -0.214 4.214 5 C 0.585 3.415 6 O -0.567 6.567 7 N -0.590 5.590 8 C 0.076 3.924 9 C 0.162 3.838 10 N -0.591 5.591 11 C -0.256 4.256 12 H 0.065 0.935 13 C 0.006 3.994 14 N -0.902 5.902 15 Si 0.903 3.097 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.282 1.282 19 C 0.133 3.867 20 C 0.096 3.904 21 C 0.087 3.913 22 C -0.085 4.085 23 N -0.552 5.552 24 H 0.411 0.589 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.146 0.854 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.022 0.978 32 H 0.093 0.907 33 H 0.255 0.745 34 H 0.022 0.978 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.723 -10.166 -10.401 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C -0.185 4.185 4 C -0.223 4.223 5 C 0.375 3.625 6 O -0.448 6.448 7 N -0.321 5.321 8 C -0.048 4.048 9 C 0.035 3.965 10 N -0.314 5.314 11 C -0.386 4.386 12 H 0.083 0.917 13 C -0.193 4.193 14 N -0.546 5.546 15 Si 0.733 3.267 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.208 1.208 19 C 0.005 3.995 20 C -0.028 4.028 21 C -0.029 4.029 22 C -0.142 4.142 23 N -0.149 5.149 24 H 0.247 0.753 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.163 0.837 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.040 0.960 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.354 -10.428 -10.539 16.550 hybrid contribution -0.458 0.506 0.635 0.932 sum -7.812 -9.922 -9.904 16.049 Atomic orbital electron populations 1.20302 0.87894 1.03017 1.02741 1.20165 0.93320 0.86002 1.10787 1.21832 0.90605 0.97767 1.08278 1.20143 0.93375 0.92150 1.16678 1.17451 0.86028 0.80239 0.78828 1.90690 1.37757 1.71481 1.44859 1.47855 1.19666 1.22450 1.42164 1.22954 0.88664 0.99837 0.93337 1.21194 0.90964 0.93735 0.90585 1.43961 1.13825 1.25067 1.48553 1.19143 1.32441 0.89744 0.97255 0.91732 1.25125 1.01841 0.96741 0.95627 1.70020 1.43316 1.25276 1.15953 0.86363 0.78224 0.83716 0.78408 1.20932 1.21639 1.20824 1.21287 0.91116 0.98292 0.88755 1.22178 0.87970 0.92758 0.99871 1.20125 0.84795 0.94069 1.03906 1.20382 0.94287 0.96396 1.03175 1.41395 1.05225 1.08479 1.59791 0.75316 0.90931 0.90108 0.92062 0.83665 0.92400 0.89585 0.95983 0.88918 0.93522 0.95975 0.91686 0.90065 0.92159 0.90429 0.91938 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.41 36.01 0.37 -0.28 16 2 C 0.01 0.07 7.13 -81.86 -0.58 -0.51 16 3 C -0.16 -2.32 8.55 -37.50 -0.32 -2.64 16 4 C -0.21 -3.60 5.37 -103.35 -0.55 -4.16 16 5 C 0.59 11.57 7.32 -12.59 -0.09 11.48 16 6 O -0.57 -12.31 15.73 5.26 0.08 -12.23 16 7 N -0.59 -11.78 2.94 -173.54 -0.51 -12.29 16 8 C 0.08 1.49 5.79 -3.36 -0.02 1.47 16 9 C 0.16 3.87 5.50 -3.37 -0.02 3.85 16 10 N -0.59 -14.98 2.95 -171.77 -0.51 -15.49 16 11 C -0.26 -6.99 9.55 -15.06 -0.14 -7.13 16 12 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 13 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 14 N -0.90 -25.95 11.34 55.49 0.63 -25.32 16 15 Si 0.90 21.40 29.58 -169.99 -5.03 16.37 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.13 2.93 6.67 -3.60 -0.02 2.90 16 20 C 0.10 1.91 6.60 -3.60 -0.02 1.88 16 21 C 0.09 1.23 7.17 -81.89 -0.59 0.64 16 22 C -0.08 -1.03 9.87 36.00 0.36 -0.67 16 23 N -0.55 -6.09 5.90 -5.42 -0.03 -6.12 16 24 H 0.41 3.04 8.96 -40.82 -0.37 2.68 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.15 1.98 7.38 -52.49 -0.39 1.60 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.54 4.53 -51.93 -0.24 1.31 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 2.41 6.18 -51.93 -0.32 2.09 16 33 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 1.36 7.94 -51.93 -0.41 0.95 16 36 H 0.08 1.56 6.99 -51.93 -0.36 1.20 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.24 7.63 -51.93 -0.40 0.85 16 LS Contribution 323.67 15.07 4.88 4.88 Total: -1.00 -33.00 323.67 -8.05 -41.05 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.83 Total: 2.25 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -1.72 Total: 6.91 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.42 Total: -59.23 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.08 Total: -12.23 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.00 -8.05 -41.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610397170.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.613 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds