Wall clock time and date at job start Mon Mar 30 2020 02:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39763 * 125.83472 * 2 1 4 4 C 1.36108 * 107.82441 * 179.97438 * 3 2 1 5 5 N 1.39475 * 126.21192 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00251 * 0.02562 * 5 4 3 7 7 O 1.21289 * 119.99763 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00002 * 180.02562 * 6 5 4 9 9 H 1.08999 * 115.54993 * 325.72350 * 8 6 5 10 10 C 1.53000 * 117.49681 * 111.39157 * 8 6 5 11 11 C 1.53002 * 60.02940 * 107.47810 * 10 8 6 12 12 C 1.52999 * 117.49968 * 107.50530 * 11 10 8 13 13 C 1.53002 * 117.49773 * 252.51785 * 11 10 8 14 14 N 1.35257 * 107.56940 * 0.26216 * 4 3 2 15 15 C 1.46496 * 126.04574 * 179.73835 * 14 4 3 16 16 C 1.50704 * 109.47469 * 90.00160 * 15 14 4 17 17 H 1.08007 * 119.99669 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00596 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99950 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00349 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47114 * 90.00309 * 20 18 16 22 22 H 1.48503 * 109.47124 * 210.00418 * 20 18 16 23 23 H 1.48499 * 109.46835 * 329.99974 * 20 18 16 24 24 N 1.30850 * 125.84271 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47251 * 89.99949 * 1 2 3 26 26 H 1.09006 * 109.46990 * 210.00034 * 1 2 3 27 27 H 1.09000 * 109.47203 * 330.00035 * 1 2 3 28 28 H 1.07998 * 126.08760 * 359.94654 * 3 2 1 29 29 H 0.96999 * 119.99887 * 180.02562 * 5 4 3 30 30 H 1.09002 * 117.49833 * 214.97915 * 10 8 6 31 31 H 1.09002 * 117.49953 * 359.97438 * 10 8 6 32 32 H 1.08994 * 109.47641 * 111.39010 * 12 11 10 33 33 H 1.09000 * 109.46660 * 231.39296 * 12 11 10 34 34 H 1.08997 * 109.47098 * 351.38476 * 12 11 10 35 35 H 1.09005 * 109.47034 * 8.60952 * 13 11 10 36 36 H 1.08996 * 109.47323 * 128.60841 * 13 11 10 37 37 H 1.08997 * 109.47719 * 248.61411 * 13 11 10 38 38 H 1.09005 * 109.47388 * 210.00073 * 15 14 4 39 39 H 1.08999 * 109.47590 * 330.00113 * 15 14 4 40 40 H 0.96999 * 120.00142 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1331 0.0000 4 6 3.6196 0.7122 0.0006 5 7 4.7512 1.5277 0.0013 6 6 4.6156 2.8686 0.0020 7 8 3.5095 3.3662 0.0024 8 6 5.8383 3.7496 0.0021 9 1 6.6949 3.3649 0.5556 10 6 6.1217 4.5648 -1.2612 11 6 5.6178 5.2643 0.0028 12 6 6.6165 6.1237 0.7805 13 6 4.1730 5.7679 0.0031 14 7 3.6092 -0.6403 -0.0050 15 6 4.7870 -1.5114 -0.0118 16 6 5.1949 -1.8160 1.4066 17 1 4.6332 -1.4017 2.2308 18 6 6.2851 -2.6235 1.6522 19 7 6.9695 -3.1275 0.6486 20 14 6.7902 -3.0016 3.4104 21 1 6.0912 -4.2272 3.8735 22 1 8.2584 -3.2173 3.4682 23 1 6.4227 -1.8609 4.2872 24 7 2.2732 -1.0607 0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.9901 2.1597 -0.0008 29 1 5.6358 1.1297 0.0013 30 1 7.1648 4.7167 -1.5386 31 1 5.4241 4.4636 -2.0926 32 1 6.3374 7.1737 0.6936 33 1 6.6073 5.8310 1.8304 34 1 7.6164 5.9785 0.3717 35 1 3.6606 5.4025 -0.8869 36 1 3.6609 5.4020 0.8930 37 1 4.1680 6.8578 0.0034 38 1 4.5486 -2.4409 -0.5289 39 1 5.6070 -1.0098 -0.5259 40 1 7.7367 -3.6953 0.8214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611072919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:18 Heat of formation + Delta-G solvation = 56.874436 kcal Electronic energy + Delta-G solvation = -21513.936564 eV Core-core repulsion = 18331.077234 eV Total energy + Delta-G solvation = -3182.859330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91959 -39.76947 -37.26087 -34.66325 -33.73931 -32.05877 -29.85042 -29.07714 -28.13434 -27.50824 -26.02796 -24.42070 -22.81268 -21.15997 -19.85015 -19.43647 -18.67366 -16.92624 -16.76817 -16.38712 -15.24507 -15.00805 -14.63490 -14.39659 -14.07529 -13.85860 -13.66709 -13.32813 -12.80870 -12.76345 -12.57994 -12.49445 -12.13329 -12.00062 -11.89107 -11.75504 -11.55569 -11.30114 -11.07319 -10.89077 -10.42443 -10.34338 -10.23284 -9.98210 -9.81037 -9.69190 -9.28545 -8.72280 -7.89599 -7.40852 -6.33553 -4.41967 2.22790 2.81373 3.07969 3.16542 3.23335 3.27710 3.53453 3.71975 3.83820 4.24211 4.50584 4.57413 4.68738 4.97756 4.99823 5.05041 5.38441 5.44585 5.54686 5.57624 5.66518 5.79987 5.82843 5.91839 5.97133 6.03583 6.11774 6.17893 6.21624 6.31708 6.41893 6.54004 6.69855 6.84973 7.05152 7.54200 7.59821 7.67113 7.80025 7.94855 8.37487 8.63237 8.72412 9.25635 10.73609 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.005731 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.354086 B = 4884.770776 C = 6472.898436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.296 4.296 4 C 0.303 3.697 5 N -0.637 5.637 6 C 0.549 3.451 7 O -0.511 6.511 8 C -0.185 4.185 9 H 0.127 0.873 10 C -0.146 4.146 11 C -0.091 4.091 12 C -0.117 4.117 13 C -0.105 4.105 14 N -0.345 5.345 15 C 0.256 3.744 16 C -0.540 4.540 17 H 0.064 0.936 18 C 0.067 3.933 19 N -0.890 5.890 20 Si 0.906 3.094 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.272 1.272 24 N -0.286 5.286 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.161 0.839 29 H 0.416 0.584 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 15.595 -2.550 15.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 C -0.328 4.328 4 C 0.080 3.920 5 N -0.283 5.283 6 C 0.336 3.664 7 O -0.386 6.386 8 C -0.207 4.207 9 H 0.145 0.855 10 C -0.183 4.183 11 C -0.092 4.092 12 C -0.174 4.174 13 C -0.161 4.161 14 N -0.131 5.131 15 C 0.139 3.861 16 C -0.578 4.578 17 H 0.083 0.917 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.733 3.267 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.197 1.197 24 N -0.112 5.112 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.178 0.822 29 H 0.253 0.747 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.389 14.498 -2.603 14.795 hybrid contribution 1.174 -0.015 0.990 1.536 sum -0.215 14.483 -1.613 14.574 Atomic orbital electron populations 1.20012 0.87631 1.02405 1.01992 1.22032 0.96489 0.91093 1.01905 1.21261 0.89059 1.00399 1.22117 1.17956 0.88103 0.83336 1.02581 1.42795 1.08205 1.05575 1.71757 1.19610 0.90124 0.80898 0.75784 1.90623 1.26664 1.73379 1.47897 1.22300 0.98670 0.93769 1.05936 0.85518 1.23251 1.02711 1.01287 0.91048 1.21606 0.98028 0.90223 0.99320 1.21403 0.97204 0.98984 0.99801 1.21379 0.92008 0.98829 1.03926 1.49339 1.06506 1.02213 1.54994 1.19614 0.77866 0.89751 0.98901 1.21346 1.13271 1.31830 0.91380 0.91736 1.24933 0.95689 0.94902 0.98154 1.69919 1.19249 1.32702 1.30934 0.86354 0.77625 0.79109 0.83622 1.20178 1.20839 1.19704 1.77345 0.86160 1.21832 1.25841 0.91413 0.91534 0.91176 0.82153 0.74744 0.87714 0.88121 0.91652 0.91866 0.92236 0.91552 0.91218 0.93330 0.92574 0.93819 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.02 7.21 -82.44 -0.59 0.42 16 3 C -0.30 -6.18 9.58 -39.78 -0.38 -6.56 16 4 C 0.30 6.52 7.66 -153.16 -1.17 5.35 16 5 N -0.64 -11.46 5.41 -11.46 -0.06 -11.52 16 6 C 0.55 8.81 7.56 -10.98 -0.08 8.72 16 7 O -0.51 -9.10 10.23 5.55 0.06 -9.04 16 8 C -0.19 -2.24 5.91 -91.73 -0.54 -2.78 16 9 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 10 C -0.15 -1.46 9.52 -26.73 -0.25 -1.72 16 11 C -0.09 -0.97 2.70 -154.47 -0.42 -1.38 16 12 C -0.12 -0.98 9.85 37.16 0.37 -0.61 16 13 C -0.10 -1.21 8.09 37.16 0.30 -0.91 16 14 N -0.35 -8.24 3.60 -61.57 -0.22 -8.46 16 15 C 0.26 6.50 6.00 -5.19 -0.03 6.47 16 16 C -0.54 -14.66 9.39 -34.44 -0.32 -14.98 16 17 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -24.46 13.29 55.43 0.74 -23.73 16 20 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 N -0.29 -6.80 12.56 33.65 0.42 -6.37 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.16 3.23 5.83 -52.49 -0.31 2.92 16 29 H 0.42 7.00 7.97 -40.82 -0.33 6.67 16 30 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 31 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 32 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 35 H 0.07 0.85 7.02 -51.93 -0.36 0.49 16 36 H 0.07 0.93 7.26 -51.93 -0.38 0.55 16 37 H 0.05 0.46 7.92 -51.93 -0.41 0.05 16 38 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -30.80 335.74 -7.80 -38.59 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.91 Total: 6.53 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.86 Total: -6.85 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.88 Total: -50.09 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.06 Total: -9.04 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.80 -7.80 -38.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611072919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.469 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds