Wall clock time and date at job start Mon Mar 30 2020 02:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39763 * 125.83472 * 2 1 4 4 C 1.36108 * 107.82441 * 179.97438 * 3 2 1 5 5 N 1.39475 * 126.21192 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00251 * 0.02562 * 5 4 3 7 7 O 1.21289 * 119.99763 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00002 * 180.02562 * 6 5 4 9 9 H 1.08999 * 115.54993 * 325.72350 * 8 6 5 10 10 C 1.53000 * 117.49681 * 111.39157 * 8 6 5 11 11 C 1.53002 * 60.02940 * 107.47810 * 10 8 6 12 12 C 1.52999 * 117.49968 * 107.50530 * 11 10 8 13 13 C 1.53002 * 117.49773 * 252.51785 * 11 10 8 14 14 N 1.35257 * 107.56940 * 0.26216 * 4 3 2 15 15 C 1.46496 * 126.04574 * 179.73835 * 14 4 3 16 16 C 1.50704 * 109.47469 * 90.00160 * 15 14 4 17 17 H 1.08007 * 119.99669 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00596 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99950 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00349 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47114 * 90.00309 * 20 18 16 22 22 H 1.48503 * 109.47124 * 210.00418 * 20 18 16 23 23 H 1.48499 * 109.46835 * 329.99974 * 20 18 16 24 24 N 1.30850 * 125.84271 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47251 * 89.99949 * 1 2 3 26 26 H 1.09006 * 109.46990 * 210.00034 * 1 2 3 27 27 H 1.09000 * 109.47203 * 330.00035 * 1 2 3 28 28 H 1.07998 * 126.08760 * 359.94654 * 3 2 1 29 29 H 0.96999 * 119.99887 * 180.02562 * 5 4 3 30 30 H 1.09002 * 117.49833 * 214.97915 * 10 8 6 31 31 H 1.09002 * 117.49953 * 359.97438 * 10 8 6 32 32 H 1.08994 * 109.47641 * 111.39010 * 12 11 10 33 33 H 1.09000 * 109.46660 * 231.39296 * 12 11 10 34 34 H 1.08997 * 109.47098 * 351.38476 * 12 11 10 35 35 H 1.09005 * 109.47034 * 8.60952 * 13 11 10 36 36 H 1.08996 * 109.47323 * 128.60841 * 13 11 10 37 37 H 1.08997 * 109.47719 * 248.61411 * 13 11 10 38 38 H 1.09005 * 109.47388 * 210.00073 * 15 14 4 39 39 H 1.08999 * 109.47590 * 330.00113 * 15 14 4 40 40 H 0.96999 * 120.00142 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1331 0.0000 4 6 3.6196 0.7122 0.0006 5 7 4.7512 1.5277 0.0013 6 6 4.6156 2.8686 0.0020 7 8 3.5095 3.3662 0.0024 8 6 5.8383 3.7496 0.0021 9 1 6.6949 3.3649 0.5556 10 6 6.1217 4.5648 -1.2612 11 6 5.6178 5.2643 0.0028 12 6 6.6165 6.1237 0.7805 13 6 4.1730 5.7679 0.0031 14 7 3.6092 -0.6403 -0.0050 15 6 4.7870 -1.5114 -0.0118 16 6 5.1949 -1.8160 1.4066 17 1 4.6332 -1.4017 2.2308 18 6 6.2851 -2.6235 1.6522 19 7 6.9695 -3.1275 0.6486 20 14 6.7902 -3.0016 3.4104 21 1 6.0912 -4.2272 3.8735 22 1 8.2584 -3.2173 3.4682 23 1 6.4227 -1.8609 4.2872 24 7 2.2732 -1.0607 0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.9901 2.1597 -0.0008 29 1 5.6358 1.1297 0.0013 30 1 7.1648 4.7167 -1.5386 31 1 5.4241 4.4636 -2.0926 32 1 6.3374 7.1737 0.6936 33 1 6.6073 5.8310 1.8304 34 1 7.6164 5.9785 0.3717 35 1 3.6606 5.4025 -0.8869 36 1 3.6609 5.4020 0.8930 37 1 4.1680 6.8578 0.0034 38 1 4.5486 -2.4409 -0.5289 39 1 5.6070 -1.0098 -0.5259 40 1 7.7367 -3.6953 0.8214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611072919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:17 Heat of formation + Delta-G solvation = 39.147044 kcal Electronic energy + Delta-G solvation = -21514.705281 eV Core-core repulsion = 18331.077234 eV Total energy + Delta-G solvation = -3183.628047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.46457 -41.07154 -38.33886 -36.24053 -35.58026 -33.84855 -31.06209 -30.52490 -29.59978 -28.30555 -27.82633 -25.61374 -24.67841 -22.46110 -21.30204 -20.80038 -19.81392 -18.89296 -18.27497 -17.88950 -16.74042 -16.54942 -16.22138 -15.72534 -15.44260 -15.09694 -14.65612 -14.51273 -14.46906 -14.11516 -14.05697 -13.59320 -13.45813 -13.39362 -13.13607 -12.93804 -12.87057 -12.73294 -12.67841 -12.31672 -12.10878 -11.92094 -11.69368 -11.44139 -11.19393 -10.82624 -10.78479 -10.51940 -9.64671 -9.06885 -8.38536 -6.56295 0.76660 1.31967 1.34724 1.37540 1.47940 1.59365 2.02211 2.18260 2.33860 2.75668 2.91756 3.45742 3.64651 3.81894 3.83114 4.08088 4.20512 4.25056 4.60312 4.64762 4.72853 4.81100 4.83358 4.85893 4.88303 4.90095 4.94208 5.02104 5.10128 5.11832 5.13755 5.20407 5.23815 5.35997 5.48693 5.56778 5.74497 5.95370 6.15249 6.29260 6.55146 6.98419 7.03681 7.16034 8.68088 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.005731 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.354086 B = 4884.770776 C = 6472.898436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.058 3.942 3 C -0.308 4.308 4 C 0.299 3.701 5 N -0.639 5.639 6 C 0.545 3.455 7 O -0.530 6.530 8 C -0.200 4.200 9 H 0.144 0.856 10 C -0.130 4.130 11 C -0.088 4.088 12 C -0.114 4.114 13 C -0.103 4.103 14 N -0.368 5.368 15 C 0.273 3.727 16 C -0.557 4.557 17 H 0.046 0.954 18 C 0.028 3.972 19 N -0.914 5.914 20 Si 0.970 3.030 21 H -0.276 1.276 22 H -0.267 1.267 23 H -0.272 1.272 24 N -0.332 5.332 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.169 0.831 29 H 0.419 0.581 30 H 0.134 0.866 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.027 0.973 39 H 0.047 0.953 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 17.273 -2.014 17.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.107 4.107 3 C -0.340 4.340 4 C 0.077 3.923 5 N -0.286 5.286 6 C 0.335 3.665 7 O -0.406 6.406 8 C -0.221 4.221 9 H 0.161 0.839 10 C -0.167 4.167 11 C -0.089 4.089 12 C -0.171 4.171 13 C -0.160 4.160 14 N -0.154 5.154 15 C 0.154 3.846 16 C -0.595 4.595 17 H 0.064 0.936 18 C -0.174 4.174 19 N -0.551 5.551 20 Si 0.794 3.206 21 H -0.201 1.201 22 H -0.192 1.192 23 H -0.197 1.197 24 N -0.157 5.157 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.112 0.888 28 H 0.186 0.814 29 H 0.257 0.743 30 H 0.152 0.848 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.065 0.935 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.530 16.199 -2.079 16.341 hybrid contribution 0.827 -0.451 0.770 1.217 sum 0.298 15.748 -1.308 15.805 Atomic orbital electron populations 1.20221 0.83858 1.03872 1.03879 1.22907 0.98764 0.90072 0.99004 1.21475 0.88996 1.00804 1.22717 1.18384 0.89694 0.82856 1.01388 1.43048 1.07418 1.06052 1.72073 1.20457 0.91362 0.80287 0.74437 1.90602 1.27981 1.73429 1.48565 1.22368 0.97317 0.93964 1.08421 0.83873 1.23384 1.04157 0.99106 0.90039 1.21764 0.98017 0.89169 0.99936 1.21428 0.97253 0.99107 0.99281 1.21320 0.92510 1.00192 1.01936 1.49159 1.06310 1.02890 1.57002 1.19211 0.78634 0.88956 0.97822 1.21396 1.13781 1.32721 0.91573 0.93605 1.25684 0.95318 0.94271 1.02092 1.69990 1.19550 1.32811 1.32793 0.85382 0.77956 0.78607 0.78701 1.20123 1.19161 1.19667 1.77293 0.86427 1.23654 1.28355 0.89183 0.90891 0.88837 0.81430 0.74339 0.84826 0.88929 0.90366 0.92115 0.90609 0.93308 0.93421 0.91107 0.95516 0.93514 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.72 10.44 71.24 0.74 -0.98 16 2 C 0.06 2.37 7.21 43.07 0.31 2.69 16 3 C -0.31 -12.96 9.58 22.14 0.21 -12.75 16 4 C 0.30 13.21 7.66 131.32 1.01 14.21 16 5 N -0.64 -23.35 5.41 -308.56 -1.67 -25.02 16 6 C 0.55 17.46 7.56 87.66 0.66 18.12 16 7 O -0.53 -19.00 10.23 -3.06 -0.03 -19.03 16 8 C -0.20 -4.52 5.91 -11.51 -0.07 -4.59 16 9 H 0.14 2.77 8.14 -2.39 -0.02 2.75 16 10 C -0.13 -2.30 9.52 30.60 0.29 -2.01 16 11 C -0.09 -1.68 2.70 -52.16 -0.14 -1.82 16 12 C -0.11 -1.55 9.85 71.98 0.71 -0.84 16 13 C -0.10 -2.27 8.09 71.98 0.58 -1.69 16 14 N -0.37 -18.21 3.60 -348.71 -1.26 -19.47 16 15 C 0.27 14.38 6.00 85.64 0.51 14.89 16 16 C -0.56 -30.99 9.39 25.60 0.24 -30.75 16 17 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 18 C 0.03 1.51 5.46 84.65 0.46 1.97 16 19 N -0.91 -50.42 13.29 21.45 0.28 -50.14 16 20 Si 0.97 42.49 29.54 68.60 2.03 44.51 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 N -0.33 -16.19 12.56 -47.44 -0.60 -16.79 16 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.17 6.76 5.83 -2.91 -0.02 6.74 16 29 H 0.42 14.40 7.97 -92.71 -0.74 13.66 16 30 H 0.13 1.63 8.05 -2.39 -0.02 1.61 16 31 H 0.09 1.82 8.05 -2.39 -0.02 1.80 16 32 H 0.08 0.88 7.92 -2.39 -0.02 0.86 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.80 7.90 -2.39 -0.02 0.79 16 35 H 0.05 1.23 7.02 -2.38 -0.02 1.22 16 36 H 0.05 1.26 7.26 -2.39 -0.02 1.24 16 37 H 0.07 1.22 7.92 -2.39 -0.02 1.20 16 38 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.05 2.38 7.50 -2.39 -0.02 2.36 16 40 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -67.71 335.74 4.59 -63.12 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.31 Total: 26.35 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 5.53 Total: -3.54 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -3.24 Total: -111.42 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.03 Total: -19.03 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -67.71 4.59 -63.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611072919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.270 kcal (2) G-P(sol) polarization free energy of solvation -67.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds