Wall clock time and date at job start Mon Mar 30 2020 01:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35516 * 116.99924 * 2 1 4 4 C 1.39439 * 120.46716 * 179.97438 * 3 2 1 5 5 C 1.38200 * 118.50244 * 180.02562 * 4 3 2 6 6 C 1.50703 * 120.36032 * 180.02562 * 5 4 3 7 7 N 1.32451 * 119.27413 * 359.97438 * 5 4 3 8 8 C 1.32462 * 120.88631 * 0.02562 * 7 5 4 9 9 N 1.38401 * 119.18674 * 179.97438 * 8 7 5 10 10 C 1.46844 * 110.99840 * 55.78960 * 9 8 7 11 11 C 1.53042 * 109.52337 * 185.83820 * 10 9 8 12 12 C 1.53123 * 109.27714 * 300.82145 * 11 10 9 13 13 C 1.50702 * 109.52126 * 177.55785 * 12 11 10 14 14 H 1.07999 * 119.99863 * 275.45230 * 13 12 11 15 15 C 1.37873 * 119.99868 * 95.45566 * 13 12 11 16 16 N 1.31523 * 119.99787 * 185.93890 * 15 13 12 17 17 Si 1.86799 * 120.00374 * 5.93624 * 15 13 12 18 18 H 1.48497 * 109.47083 * 84.77857 * 17 15 13 19 19 H 1.48496 * 109.47367 * 204.78292 * 17 15 13 20 20 H 1.48506 * 109.46876 * 324.78428 * 17 15 13 21 21 C 1.53119 * 109.16304 * 57.65403 * 12 11 10 22 22 C 1.46856 * 111.00173 * 179.97438 * 9 8 7 23 23 N 1.32486 * 121.63043 * 0.27398 * 8 7 5 24 24 H 1.09002 * 109.47094 * 60.00178 * 1 2 3 25 25 H 1.09007 * 109.46651 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47284 * 299.99592 * 1 2 3 27 27 H 1.07995 * 120.74553 * 0.04515 * 4 3 2 28 28 H 1.08993 * 109.47297 * 269.98130 * 6 5 4 29 29 H 1.09005 * 109.47012 * 29.97963 * 6 5 4 30 30 H 1.09002 * 109.46923 * 149.97671 * 6 5 4 31 31 H 1.08998 * 109.46607 * 305.85440 * 10 9 8 32 32 H 1.08996 * 109.46232 * 65.82785 * 10 9 8 33 33 H 1.09001 * 109.50500 * 180.88284 * 11 10 9 34 34 H 1.09000 * 109.50277 * 60.76212 * 11 10 9 35 35 H 1.08998 * 109.52581 * 297.74698 * 12 11 10 36 36 H 0.96999 * 119.99809 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.50837 * 182.40041 * 21 12 11 38 38 H 1.09001 * 109.53505 * 62.30043 * 21 12 11 39 39 H 1.09000 * 109.45880 * 294.17622 * 22 9 8 40 40 H 1.09002 * 109.46088 * 54.14052 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4360 1.2918 0.0005 5 6 4.0209 2.5440 0.0011 6 6 5.5214 2.6839 0.0011 7 7 3.2481 3.6197 0.0005 8 6 1.9281 3.5087 0.0000 9 7 1.1544 4.6563 0.0000 10 6 1.4997 5.5237 -1.1334 11 6 0.7317 6.8427 -1.0205 12 6 -0.7719 6.5532 -1.0147 13 6 -1.5324 7.8430 -0.8435 14 1 -1.7037 8.2416 0.1456 15 6 -2.0093 8.5141 -1.9494 16 7 -2.5697 9.6958 -1.8104 17 14 -1.8597 7.7450 -3.6451 18 1 -3.0063 6.8303 -3.8767 19 1 -1.8634 8.8142 -4.6757 20 1 -0.5903 6.9791 -3.7310 21 6 -1.0976 5.6093 0.1460 22 6 -0.2766 4.3262 -0.0013 23 7 1.3303 2.3265 0.0054 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 4.0433 0.3987 0.0002 28 1 5.8832 2.7175 1.0287 29 1 5.9658 1.8314 -0.5129 30 1 5.8005 3.6038 -0.5127 31 1 2.5708 5.7252 -1.1235 32 1 1.2324 5.0266 -2.0659 33 1 0.9763 7.4801 -1.8702 34 1 1.0088 7.3470 -0.0948 35 1 -1.0562 6.0840 -1.9566 36 1 -2.9050 10.1681 -2.5885 37 1 -2.1598 5.3655 0.1299 38 1 -0.8497 6.0938 1.0904 39 1 -0.5351 3.8349 -0.9393 40 1 -0.4958 3.6575 0.8312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611617981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:09 Heat of formation + Delta-G solvation = 18.244726 kcal Electronic energy + Delta-G solvation = -21835.068207 eV Core-core repulsion = 18650.533767 eV Total energy + Delta-G solvation = -3184.534440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.37107 -39.08214 -38.02951 -34.66082 -33.42948 -32.06164 -30.80697 -30.29975 -28.89326 -27.08170 -26.25724 -23.43799 -23.07531 -21.87551 -21.27401 -18.93268 -18.38370 -17.72949 -16.84722 -16.37185 -16.24245 -15.42175 -14.90949 -14.80957 -14.40978 -14.11445 -13.66396 -13.45940 -13.15176 -12.96290 -12.68735 -12.51769 -12.37866 -12.16347 -11.88777 -11.67817 -11.54826 -10.98048 -10.93722 -10.66176 -10.47356 -10.12202 -9.88258 -9.70234 -9.53277 -9.29431 -9.15683 -8.97742 -8.50559 -8.14791 -6.07816 -4.06234 0.99287 1.19914 2.78059 3.27045 3.31232 3.36234 3.36916 3.75510 4.02752 4.41250 4.67892 4.76236 5.05854 5.12760 5.14204 5.14504 5.20397 5.36762 5.42325 5.48797 5.52966 5.59978 5.69049 5.74262 5.86827 6.05988 6.08122 6.17668 6.34033 6.41709 6.65196 6.71086 6.83435 6.87159 7.01854 7.08731 7.33211 7.44293 7.51071 7.77316 8.25307 8.53564 8.98604 9.55816 11.05701 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023742 B = 0.004684 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.074978 B = 5975.773590 C = 6542.979890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.304 6.304 3 C 0.385 3.615 4 C -0.290 4.290 5 C 0.223 3.777 6 C -0.102 4.102 7 N -0.553 5.553 8 C 0.542 3.458 9 N -0.450 5.450 10 C 0.067 3.933 11 C -0.109 4.109 12 C 0.011 3.989 13 C -0.508 4.508 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.901 5.901 17 Si 0.876 3.124 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.266 1.266 21 C -0.105 4.105 22 C 0.070 3.930 23 N -0.610 5.610 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.146 0.854 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.708 -18.538 2.193 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.208 6.208 3 C 0.197 3.803 4 C -0.315 4.315 5 C 0.077 3.923 6 C -0.160 4.160 7 N -0.277 5.277 8 C 0.186 3.814 9 N -0.169 5.169 10 C -0.058 4.058 11 C -0.147 4.147 12 C -0.008 4.008 13 C -0.546 4.546 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.539 5.539 17 Si 0.704 3.296 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.191 1.191 21 C -0.143 4.143 22 C -0.056 4.056 23 N -0.347 5.347 24 H 0.080 0.920 25 H 0.116 0.884 26 H 0.081 0.919 27 H 0.164 0.836 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.178 -17.537 2.509 20.948 hybrid contribution -0.036 -1.416 -1.442 2.021 sum 11.142 -18.953 1.067 22.011 Atomic orbital electron populations 1.22937 0.76679 1.03084 1.03041 1.86214 1.23411 1.24253 1.86954 1.19913 0.89292 0.84432 0.86635 1.21445 0.92450 1.00246 1.17397 1.21339 0.97030 0.86873 0.87045 1.20750 0.87423 1.04047 1.03740 1.67946 1.04374 1.33182 1.22199 1.20912 0.86926 0.87040 0.86507 1.58430 1.06419 1.10116 1.41930 1.22405 1.01465 0.94328 0.87611 1.21979 0.97539 0.92966 1.02237 1.19238 0.91981 0.95627 0.93948 1.20974 1.33814 1.04736 0.95075 0.90800 1.25067 0.94754 0.94490 0.98751 1.69916 1.40516 1.12983 1.30444 0.86886 0.79047 0.79075 0.84628 1.20302 1.21631 1.19127 1.21743 0.97984 0.93427 1.01107 1.22216 0.83217 0.98901 1.01315 1.68045 1.41316 0.98545 1.26797 0.91970 0.88415 0.91894 0.83578 0.89550 0.90131 0.89696 0.89764 0.94626 0.91759 0.91341 0.95376 0.92695 0.91471 0.91773 0.93748 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.41 101.05 1.05 1.43 16 2 O -0.30 -3.80 10.49 -18.24 -0.19 -3.99 16 3 C 0.39 5.48 7.53 -16.71 -0.13 5.36 16 4 C -0.29 -3.56 9.80 -39.15 -0.38 -3.95 16 5 C 0.22 2.84 6.81 -82.34 -0.56 2.28 16 6 C -0.10 -0.85 10.21 36.01 0.37 -0.48 16 7 N -0.55 -8.92 9.58 -10.22 -0.10 -9.02 16 8 C 0.54 9.40 7.17 -322.86 -2.32 7.08 16 9 N -0.45 -8.26 4.72 -175.43 -0.83 -9.09 16 10 C 0.07 1.24 5.33 -3.83 -0.02 1.22 16 11 C -0.11 -2.27 5.36 -26.65 -0.14 -2.41 16 12 C 0.01 0.25 1.85 -91.65 -0.17 0.08 16 13 C -0.51 -13.91 8.86 -34.44 -0.31 -14.22 16 14 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 17 Si 0.88 21.31 27.02 -169.99 -4.59 16.72 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.19 6.78 56.52 0.38 -5.81 16 21 C -0.10 -2.09 5.36 -26.65 -0.14 -2.23 16 22 C 0.07 1.25 4.63 -3.83 -0.02 1.23 16 23 N -0.61 -9.86 7.61 -13.98 -0.11 -9.96 16 24 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 27 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.47 7.55 -51.93 -0.39 1.08 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 35 H 0.03 0.66 5.24 -51.93 -0.27 0.38 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.04 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.08 1.27 7.67 -51.93 -0.40 0.87 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -31.36 325.63 -9.13 -40.48 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.13 Total: -0.90 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -2.86 Total: -2.69 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.26 Total: -54.53 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.19 Total: -3.99 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.59 Total: 16.72 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.36 -9.13 -40.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611617981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.729 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds