Wall clock time and date at job start Mon Mar 30 2020 01:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35516 * 116.99924 * 2 1 4 4 C 1.39439 * 120.46716 * 179.97438 * 3 2 1 5 5 C 1.38200 * 118.50244 * 180.02562 * 4 3 2 6 6 C 1.50703 * 120.36032 * 180.02562 * 5 4 3 7 7 N 1.32451 * 119.27413 * 359.97438 * 5 4 3 8 8 C 1.32462 * 120.88631 * 0.02562 * 7 5 4 9 9 N 1.38401 * 119.18674 * 179.97438 * 8 7 5 10 10 C 1.46844 * 110.99840 * 55.78960 * 9 8 7 11 11 C 1.53042 * 109.52337 * 185.83820 * 10 9 8 12 12 C 1.53123 * 109.27714 * 300.82145 * 11 10 9 13 13 C 1.50702 * 109.52126 * 177.55785 * 12 11 10 14 14 H 1.07999 * 119.99863 * 275.45230 * 13 12 11 15 15 C 1.37873 * 119.99868 * 95.45566 * 13 12 11 16 16 N 1.31523 * 119.99787 * 185.93890 * 15 13 12 17 17 Si 1.86799 * 120.00374 * 5.93624 * 15 13 12 18 18 H 1.48497 * 109.47083 * 84.77857 * 17 15 13 19 19 H 1.48496 * 109.47367 * 204.78292 * 17 15 13 20 20 H 1.48506 * 109.46876 * 324.78428 * 17 15 13 21 21 C 1.53119 * 109.16304 * 57.65403 * 12 11 10 22 22 C 1.46856 * 111.00173 * 179.97438 * 9 8 7 23 23 N 1.32486 * 121.63043 * 0.27398 * 8 7 5 24 24 H 1.09002 * 109.47094 * 60.00178 * 1 2 3 25 25 H 1.09007 * 109.46651 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47284 * 299.99592 * 1 2 3 27 27 H 1.07995 * 120.74553 * 0.04515 * 4 3 2 28 28 H 1.08993 * 109.47297 * 269.98130 * 6 5 4 29 29 H 1.09005 * 109.47012 * 29.97963 * 6 5 4 30 30 H 1.09002 * 109.46923 * 149.97671 * 6 5 4 31 31 H 1.08998 * 109.46607 * 305.85440 * 10 9 8 32 32 H 1.08996 * 109.46232 * 65.82785 * 10 9 8 33 33 H 1.09001 * 109.50500 * 180.88284 * 11 10 9 34 34 H 1.09000 * 109.50277 * 60.76212 * 11 10 9 35 35 H 1.08998 * 109.52581 * 297.74698 * 12 11 10 36 36 H 0.96999 * 119.99809 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.50837 * 182.40041 * 21 12 11 38 38 H 1.09001 * 109.53505 * 62.30043 * 21 12 11 39 39 H 1.09000 * 109.45880 * 294.17622 * 22 9 8 40 40 H 1.09002 * 109.46088 * 54.14052 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4360 1.2918 0.0005 5 6 4.0209 2.5440 0.0011 6 6 5.5214 2.6839 0.0011 7 7 3.2481 3.6197 0.0005 8 6 1.9281 3.5087 0.0000 9 7 1.1544 4.6563 0.0000 10 6 1.4997 5.5237 -1.1334 11 6 0.7317 6.8427 -1.0205 12 6 -0.7719 6.5532 -1.0147 13 6 -1.5324 7.8430 -0.8435 14 1 -1.7037 8.2416 0.1456 15 6 -2.0093 8.5141 -1.9494 16 7 -2.5697 9.6958 -1.8104 17 14 -1.8597 7.7450 -3.6451 18 1 -3.0063 6.8303 -3.8767 19 1 -1.8634 8.8142 -4.6757 20 1 -0.5903 6.9791 -3.7310 21 6 -1.0976 5.6093 0.1460 22 6 -0.2766 4.3262 -0.0013 23 7 1.3303 2.3265 0.0054 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 4.0433 0.3987 0.0002 28 1 5.8832 2.7175 1.0287 29 1 5.9658 1.8314 -0.5129 30 1 5.8005 3.6038 -0.5127 31 1 2.5708 5.7252 -1.1235 32 1 1.2324 5.0266 -2.0659 33 1 0.9763 7.4801 -1.8702 34 1 1.0088 7.3470 -0.0948 35 1 -1.0562 6.0840 -1.9566 36 1 -2.9050 10.1681 -2.5885 37 1 -2.1598 5.3655 0.1299 38 1 -0.8497 6.0938 1.0904 39 1 -0.5351 3.8349 -0.9393 40 1 -0.4958 3.6575 0.8312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611617981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:09 Heat of formation + Delta-G solvation = -1.904416 kcal Electronic energy + Delta-G solvation = -21835.941939 eV Core-core repulsion = 18650.533767 eV Total energy + Delta-G solvation = -3185.408172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.47977 -40.29121 -39.21797 -36.13468 -34.76578 -33.80054 -32.17375 -31.77472 -29.77551 -28.27589 -27.66617 -24.84428 -24.45779 -23.24169 -22.64408 -20.60668 -19.45918 -18.96587 -18.82581 -17.52556 -17.31624 -16.43191 -16.37066 -16.06768 -15.78696 -15.31595 -15.03825 -14.91164 -14.54102 -14.37381 -14.19992 -13.75513 -13.49822 -13.19159 -13.10875 -12.93703 -12.91011 -12.61137 -12.51620 -12.16155 -11.86748 -11.80335 -11.46445 -11.17879 -11.03477 -10.97952 -10.65613 -10.63819 -10.31890 -9.37019 -8.27164 -6.30097 -0.08270 0.15310 1.34896 1.36034 1.46668 1.83751 2.12667 2.35699 2.66314 3.00483 3.07804 3.55633 3.84481 4.02415 4.05924 4.11078 4.23721 4.30877 4.32017 4.34962 4.39987 4.50146 4.61841 4.68366 4.69539 4.79460 4.85001 4.87320 4.90599 4.94949 5.09953 5.22435 5.35403 5.50499 5.55017 5.67840 5.75281 5.79747 5.89337 6.30383 6.35399 6.76868 7.11926 7.35351 8.90058 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023742 B = 0.004684 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.074978 B = 5975.773590 C = 6542.979890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.304 6.304 3 C 0.368 3.632 4 C -0.278 4.278 5 C 0.215 3.785 6 C -0.098 4.098 7 N -0.573 5.573 8 C 0.523 3.477 9 N -0.465 5.465 10 C 0.081 3.919 11 C -0.103 4.103 12 C 0.010 3.990 13 C -0.510 4.510 14 H 0.032 0.968 15 C 0.014 3.986 16 N -0.951 5.951 17 Si 0.940 3.060 18 H -0.268 1.268 19 H -0.289 1.289 20 H -0.247 1.247 21 C -0.098 4.098 22 C 0.086 3.914 23 N -0.623 5.623 24 H 0.053 0.947 25 H 0.131 0.869 26 H 0.056 0.944 27 H 0.180 0.820 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.036 0.964 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.030 0.970 36 H 0.265 0.735 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.710 -21.687 1.310 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.208 6.208 3 C 0.181 3.819 4 C -0.302 4.302 5 C 0.070 3.930 6 C -0.155 4.155 7 N -0.298 5.298 8 C 0.167 3.833 9 N -0.184 5.184 10 C -0.045 4.045 11 C -0.141 4.141 12 C -0.009 4.009 13 C -0.548 4.548 14 H 0.050 0.950 15 C -0.183 4.183 16 N -0.591 5.591 17 Si 0.764 3.236 18 H -0.193 1.193 19 H -0.215 1.215 20 H -0.170 1.170 21 C -0.136 4.136 22 C -0.041 4.041 23 N -0.360 5.360 24 H 0.072 0.928 25 H 0.149 0.851 26 H 0.074 0.926 27 H 0.198 0.802 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.211 -20.743 1.643 24.647 hybrid contribution -0.620 -0.506 -1.050 1.321 sum 12.591 -21.249 0.593 24.706 Atomic orbital electron populations 1.23130 0.75500 1.05092 1.02270 1.86229 1.24567 1.23281 1.86754 1.20301 0.90282 0.84392 0.86945 1.21870 0.91969 1.01362 1.14959 1.22099 0.98749 0.86312 0.85824 1.20902 0.84312 1.05280 1.05037 1.67965 1.04063 1.34954 1.22815 1.20798 0.87417 0.86926 0.88188 1.58383 1.06489 1.11289 1.42275 1.22173 1.01448 0.92853 0.87991 1.21779 0.96373 0.94496 1.01458 1.19220 0.92676 0.93894 0.95104 1.21222 1.33930 1.06411 0.93269 0.95014 1.25910 0.94520 0.94778 1.03122 1.70068 1.42406 1.14828 1.31772 0.85849 0.80127 0.78413 0.79207 1.19279 1.21510 1.17020 1.21600 0.98724 0.94027 0.99282 1.21985 0.83089 0.97282 1.01743 1.67943 1.42032 0.98804 1.27239 0.92813 0.85066 0.92559 0.80249 0.88056 0.87131 0.89991 0.88733 0.94558 0.92279 0.92487 0.95193 0.92611 0.91237 0.92905 0.93651 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.41 113.37 1.18 1.80 16 2 O -0.30 -6.83 10.49 -88.18 -0.93 -7.75 16 3 C 0.37 9.61 7.53 84.85 0.64 10.24 16 4 C -0.28 -5.88 9.80 22.55 0.22 -5.66 16 5 C 0.21 4.84 6.81 42.46 0.29 5.13 16 6 C -0.10 -1.26 10.21 71.24 0.73 -0.54 16 7 N -0.57 -17.45 9.58 -186.26 -1.79 -19.23 16 8 C 0.52 17.43 7.17 261.51 1.88 19.31 16 9 N -0.47 -16.67 4.72 -708.95 -3.34 -20.01 16 10 C 0.08 2.90 5.33 86.33 0.46 3.36 16 11 C -0.10 -4.28 5.36 30.65 0.16 -4.12 16 12 C 0.01 0.46 1.85 -11.46 -0.02 0.44 16 13 C -0.51 -28.85 8.86 25.60 0.23 -28.63 16 14 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 15 C 0.01 0.78 5.47 84.65 0.46 1.24 16 16 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 17 Si 0.94 43.92 27.02 68.60 1.85 45.77 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.25 -10.64 6.78 99.48 0.67 -9.97 16 21 C -0.10 -3.94 5.36 30.65 0.16 -3.78 16 22 C 0.09 2.99 4.63 86.32 0.40 3.39 16 23 N -0.62 -19.15 7.61 -310.86 -2.37 -21.52 16 24 H 0.05 1.05 8.12 -2.39 -0.02 1.04 16 25 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.06 1.08 8.11 -2.39 -0.02 1.06 16 27 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.11 0.77 8.09 -2.38 -0.02 0.75 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 3.19 7.55 -2.39 -0.02 3.17 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.03 1.37 5.24 -2.39 -0.01 1.35 16 36 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 40 H 0.09 2.81 7.67 -2.39 -0.02 2.79 16 Total: -1.00 -69.55 325.63 1.51 -68.04 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.99 Total: 11.52 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 6.79 Total: 2.20 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -7.20 Total: -119.78 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.93 Total: -7.75 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.85 Total: 45.77 kcal Total: -69.55 1.51 -68.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611617981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.138 kcal (2) G-P(sol) polarization free energy of solvation -69.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds