Wall clock time and date at job start Mon Mar 30 2020 01:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38673 * 120.79180 * 2 1 4 4 C 1.38179 * 119.16494 * 180.22697 * 3 2 1 5 5 N 1.31886 * 120.76549 * 359.79039 * 4 3 2 6 6 C 1.31854 * 121.72557 * 359.97438 * 5 4 3 7 7 C 1.38228 * 120.76498 * 359.97165 * 6 5 4 8 8 C 1.50698 * 120.41787 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.46665 * 145.00314 * 8 7 6 10 10 C 1.53006 * 109.47184 * 264.99925 * 8 7 6 11 11 N 1.46492 * 109.47354 * 25.00400 * 8 7 6 12 12 C 1.34779 * 120.00234 * 154.99895 * 11 8 7 13 13 O 1.21592 * 119.99963 * 359.97438 * 12 11 8 14 14 N 1.34777 * 120.00068 * 179.97438 * 12 11 8 15 15 C 1.46498 * 119.99881 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47267 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47393 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99695 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00268 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00061 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00370 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46662 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47524 * 119.99308 * 21 19 17 24 24 H 1.48492 * 109.47047 * 239.99912 * 21 19 17 25 25 H 1.08992 * 109.47247 * 270.24456 * 1 2 3 26 26 H 1.08996 * 109.47251 * 30.25271 * 1 2 3 27 27 H 1.09012 * 109.46850 * 150.24842 * 1 2 3 28 28 H 1.07999 * 120.41536 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.62192 * 179.76524 * 4 3 2 30 30 H 1.08002 * 119.61775 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47050 * 180.02562 * 10 8 7 32 32 H 1.09001 * 109.46801 * 300.00442 * 10 8 7 33 33 H 1.09001 * 109.46998 * 60.00038 * 10 8 7 34 34 H 0.97005 * 120.00153 * 334.99428 * 11 8 7 35 35 H 0.96998 * 119.99899 * 0.02562 * 14 12 11 36 36 H 1.09000 * 109.47643 * 300.01132 * 15 14 12 37 37 H 1.09008 * 109.46934 * 60.00410 * 15 14 12 38 38 H 1.08999 * 109.46963 * 300.00390 * 16 15 14 39 39 H 1.09004 * 109.46755 * 60.00616 * 16 15 14 40 40 H 0.96997 * 120.00138 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1520 -0.0048 5 7 4.2403 0.0001 -0.0052 6 6 3.5983 -1.1516 -0.0005 7 6 2.2166 -1.1909 0.0055 8 6 1.4909 -2.5117 0.0114 9 1 0.5807 -2.4234 0.6045 10 6 1.1289 -2.9010 -1.4234 11 7 2.3552 -3.5412 0.5935 12 6 1.8110 -4.6340 1.1647 13 8 0.6026 -4.7651 1.1972 14 7 2.6063 -5.5815 1.6998 15 6 2.0147 -6.7690 2.3212 16 6 3.1278 -7.6780 2.8462 17 6 2.5193 -8.8998 3.4848 18 1 1.4459 -9.0162 3.5136 19 6 3.3327 -9.8687 4.0331 20 7 4.6398 -9.7268 3.9983 21 14 2.5785 -11.3836 4.8240 22 1 1.0984 -11.3043 4.7335 23 1 3.0536 -12.5999 4.1167 24 1 2.9838 -11.4507 6.2510 25 1 -0.3633 0.0044 1.0276 26 1 -0.3633 0.8877 -0.5177 27 1 -0.3633 -0.8923 -0.5100 28 1 1.6967 2.1377 0.0004 29 1 4.1583 2.0753 -0.0087 30 1 4.1586 -2.0750 -0.0014 31 1 0.6036 -3.8561 -1.4191 32 1 0.4858 -2.1349 -1.8564 33 1 2.0391 -2.9892 -2.0166 34 1 3.3193 -3.4366 0.5679 35 1 3.5702 -5.4767 1.6742 36 1 1.3736 -6.4650 3.1486 37 1 1.4225 -7.3089 1.5822 38 1 3.7691 -7.9820 2.0189 39 1 3.7195 -7.1379 3.5853 40 1 5.2120 -10.4082 4.3844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612377651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:18 Heat of formation + Delta-G solvation = -10.011387 kcal Electronic energy + Delta-G solvation = -20697.471841 eV Core-core repulsion = 17511.712125 eV Total energy + Delta-G solvation = -3185.759717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91693 -39.49439 -36.26890 -34.70622 -34.12715 -32.86153 -31.56270 -29.99672 -28.96770 -28.17822 -24.93106 -24.35476 -22.82327 -21.53317 -20.84303 -20.41078 -18.29968 -17.17752 -16.58537 -16.28697 -15.92562 -15.26555 -15.05412 -14.69479 -14.51356 -14.37223 -13.96998 -13.48441 -13.33121 -13.16870 -13.05638 -12.94689 -12.61438 -12.47171 -12.27620 -11.75116 -11.35370 -11.17179 -11.04246 -10.60900 -10.32442 -9.95775 -9.74700 -9.69737 -9.56152 -9.35557 -9.23627 -9.04351 -8.48867 -8.26531 -6.08350 -4.10914 0.78943 0.93652 2.95065 3.29269 3.36918 3.42217 3.47236 3.57031 4.05505 4.33092 4.39287 4.40194 4.53462 4.62222 4.76579 5.06526 5.12334 5.14082 5.16458 5.24031 5.28872 5.41168 5.49984 5.62334 5.71806 5.83081 5.97152 6.10216 6.29252 6.38534 6.40333 6.57424 6.78212 6.99253 7.19139 7.57581 7.64366 7.68774 7.90953 8.26119 8.40837 8.92986 8.98212 9.53888 11.03364 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034517 B = 0.002903 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.002012 B = 9644.266109 C =10120.543182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.031 4.031 3 C -0.171 4.171 4 C 0.096 3.904 5 N -0.484 5.484 6 C 0.107 3.893 7 C -0.140 4.140 8 C 0.208 3.792 9 H 0.101 0.899 10 C -0.160 4.160 11 N -0.751 5.751 12 C 0.701 3.299 13 O -0.596 6.596 14 N -0.738 5.738 15 C 0.140 3.860 16 C 0.012 3.988 17 C -0.520 4.520 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.136 0.864 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.392 0.608 35 H 0.393 0.607 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.891 22.308 -10.500 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.039 4.039 3 C -0.191 4.191 4 C -0.060 4.060 5 N -0.192 5.192 6 C -0.050 4.050 7 C -0.143 4.143 8 C 0.101 3.899 9 H 0.119 0.881 10 C -0.218 4.218 11 N -0.409 5.409 12 C 0.401 3.599 13 O -0.475 6.475 14 N -0.391 5.391 15 C 0.018 3.982 16 C -0.025 4.025 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.210 1.210 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.154 0.846 29 H 0.173 0.827 30 H 0.170 0.830 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.228 0.772 35 H 0.226 0.774 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.951 22.052 -10.397 24.699 hybrid contribution -0.145 -0.703 0.455 0.849 sum -4.096 21.350 -9.942 23.905 Atomic orbital electron populations 1.20963 0.90025 1.03773 1.03476 1.20137 0.96914 0.92101 0.94793 1.22030 0.95631 0.98513 1.02937 1.22772 0.91806 0.96295 0.95164 1.67704 1.41067 0.98373 1.12072 1.22484 0.90992 0.96306 0.95220 1.20899 0.95408 0.95420 1.02567 1.19442 0.93154 0.82177 0.95121 0.88144 1.22216 1.01969 1.02657 0.94999 1.45306 1.09453 1.21831 1.64298 1.16018 0.85749 0.79831 0.78309 1.90883 1.12601 1.79204 1.64829 1.45543 1.09257 1.22324 1.61951 1.21599 0.97778 0.83051 0.95815 1.19332 0.93108 0.93633 0.96453 1.21090 0.93350 1.04003 1.37413 0.92167 1.25001 0.94820 0.98491 0.96034 1.69966 1.02920 1.34910 1.45533 0.86458 0.79537 0.82617 0.78965 1.19570 1.20947 1.20959 0.90043 0.90782 0.90295 0.84650 0.82719 0.83040 0.90940 0.91702 0.92298 0.77213 0.77362 0.92774 0.92728 0.95947 0.95961 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 9.31 36.00 0.34 -0.51 16 2 C -0.03 -0.27 5.92 -104.32 -0.62 -0.89 16 3 C -0.17 -1.32 9.82 -39.44 -0.39 -1.71 16 4 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 5 N -0.48 -5.33 10.36 -13.25 -0.14 -5.47 16 6 C 0.11 1.12 10.40 -17.55 -0.18 0.93 16 7 C -0.14 -1.41 5.07 -104.48 -0.53 -1.94 16 8 C 0.21 2.33 2.11 -69.08 -0.15 2.19 16 9 H 0.10 1.27 6.55 -51.93 -0.34 0.93 16 10 C -0.16 -1.64 9.30 37.16 0.35 -1.30 16 11 N -0.75 -9.52 5.00 -59.81 -0.30 -9.82 16 12 C 0.70 12.07 8.53 -86.92 -0.74 11.33 16 13 O -0.60 -12.43 16.01 5.29 0.08 -12.35 16 14 N -0.74 -13.00 5.56 -65.22 -0.36 -13.36 16 15 C 0.14 3.01 5.61 -4.05 -0.02 2.99 16 16 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 17 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 18 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 21 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 27 H 0.08 0.55 5.61 -51.92 -0.29 0.25 16 28 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 29 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.15 1.35 6.09 -52.49 -0.32 1.03 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.54 6.94 -51.93 -0.36 0.18 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.39 4.04 6.25 -40.82 -0.26 3.78 16 35 H 0.39 5.98 8.49 -40.82 -0.35 5.63 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.22 8.14 -51.92 -0.42 0.79 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -33.34 335.19 -8.32 -41.66 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.68 Total: 4.66 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.70 Total: -1.33 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.06 Total: -54.12 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.08 Total: -12.35 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.34 -8.32 -41.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612377651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.650 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds