Wall clock time and date at job start Mon Mar 30 2020 01:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38673 * 120.79180 * 2 1 4 4 C 1.38179 * 119.16494 * 180.22697 * 3 2 1 5 5 N 1.31886 * 120.76549 * 359.79039 * 4 3 2 6 6 C 1.31854 * 121.72557 * 359.97438 * 5 4 3 7 7 C 1.38228 * 120.76498 * 359.97165 * 6 5 4 8 8 C 1.50698 * 120.41787 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.46665 * 145.00314 * 8 7 6 10 10 C 1.53006 * 109.47184 * 264.99925 * 8 7 6 11 11 N 1.46492 * 109.47354 * 25.00400 * 8 7 6 12 12 C 1.34779 * 120.00234 * 154.99895 * 11 8 7 13 13 O 1.21592 * 119.99963 * 359.97438 * 12 11 8 14 14 N 1.34777 * 120.00068 * 179.97438 * 12 11 8 15 15 C 1.46498 * 119.99881 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47267 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47393 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99695 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00268 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00061 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00370 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46662 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47524 * 119.99308 * 21 19 17 24 24 H 1.48492 * 109.47047 * 239.99912 * 21 19 17 25 25 H 1.08992 * 109.47247 * 270.24456 * 1 2 3 26 26 H 1.08996 * 109.47251 * 30.25271 * 1 2 3 27 27 H 1.09012 * 109.46850 * 150.24842 * 1 2 3 28 28 H 1.07999 * 120.41536 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.62192 * 179.76524 * 4 3 2 30 30 H 1.08002 * 119.61775 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47050 * 180.02562 * 10 8 7 32 32 H 1.09001 * 109.46801 * 300.00442 * 10 8 7 33 33 H 1.09001 * 109.46998 * 60.00038 * 10 8 7 34 34 H 0.97005 * 120.00153 * 334.99428 * 11 8 7 35 35 H 0.96998 * 119.99899 * 0.02562 * 14 12 11 36 36 H 1.09000 * 109.47643 * 300.01132 * 15 14 12 37 37 H 1.09008 * 109.46934 * 60.00410 * 15 14 12 38 38 H 1.08999 * 109.46963 * 300.00390 * 16 15 14 39 39 H 1.09004 * 109.46755 * 60.00616 * 16 15 14 40 40 H 0.96997 * 120.00138 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1520 -0.0048 5 7 4.2403 0.0001 -0.0052 6 6 3.5983 -1.1516 -0.0005 7 6 2.2166 -1.1909 0.0055 8 6 1.4909 -2.5117 0.0114 9 1 0.5807 -2.4234 0.6045 10 6 1.1289 -2.9010 -1.4234 11 7 2.3552 -3.5412 0.5935 12 6 1.8110 -4.6340 1.1647 13 8 0.6026 -4.7651 1.1972 14 7 2.6063 -5.5815 1.6998 15 6 2.0147 -6.7690 2.3212 16 6 3.1278 -7.6780 2.8462 17 6 2.5193 -8.8998 3.4848 18 1 1.4459 -9.0162 3.5136 19 6 3.3327 -9.8687 4.0331 20 7 4.6398 -9.7268 3.9983 21 14 2.5785 -11.3836 4.8240 22 1 1.0984 -11.3043 4.7335 23 1 3.0536 -12.5999 4.1167 24 1 2.9838 -11.4507 6.2510 25 1 -0.3633 0.0044 1.0276 26 1 -0.3633 0.8877 -0.5177 27 1 -0.3633 -0.8923 -0.5100 28 1 1.6967 2.1377 0.0004 29 1 4.1583 2.0753 -0.0087 30 1 4.1586 -2.0750 -0.0014 31 1 0.6036 -3.8561 -1.4191 32 1 0.4858 -2.1349 -1.8564 33 1 2.0391 -2.9892 -2.0166 34 1 3.3193 -3.4366 0.5679 35 1 3.5702 -5.4767 1.6742 36 1 1.3736 -6.4650 3.1486 37 1 1.4225 -7.3089 1.5822 38 1 3.7691 -7.9820 2.0189 39 1 3.7195 -7.1379 3.5853 40 1 5.2120 -10.4082 4.3844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612377651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:18 Heat of formation + Delta-G solvation = -32.898224 kcal Electronic energy + Delta-G solvation = -20698.464289 eV Core-core repulsion = 17511.712125 eV Total energy + Delta-G solvation = -3186.752165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.74944 -40.74381 -37.38766 -36.33978 -34.97920 -34.73577 -32.67815 -31.26979 -30.28252 -28.79553 -26.72605 -25.28413 -23.75242 -22.89377 -22.18643 -21.63236 -19.61486 -18.45139 -18.03103 -17.27898 -16.89886 -16.65694 -16.46029 -16.08727 -15.54973 -15.44747 -15.20106 -14.98232 -14.44449 -14.27993 -13.97694 -13.79183 -13.58744 -13.41210 -13.25060 -13.19357 -12.94445 -12.56241 -12.50352 -12.23627 -12.09243 -11.66947 -11.48825 -11.19815 -10.60860 -10.51591 -10.40933 -10.31797 -9.99479 -9.74804 -8.23495 -6.33661 0.09859 0.26487 1.41723 1.42504 1.55590 1.70773 2.15064 2.41780 2.79106 3.11462 3.27338 3.37225 3.65642 3.79734 3.88703 4.02121 4.25573 4.32829 4.47347 4.49084 4.53643 4.59250 4.69524 4.75795 4.81421 4.86779 4.88074 5.00365 5.13329 5.25015 5.31519 5.36275 5.51388 5.53222 5.60431 5.74031 5.79842 5.99559 6.17827 6.79963 6.99686 7.07705 7.35741 7.57206 8.88678 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034517 B = 0.002903 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.002012 B = 9644.266109 C =10120.543182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.036 4.036 3 C -0.165 4.165 4 C 0.088 3.912 5 N -0.511 5.511 6 C 0.093 3.907 7 C -0.150 4.150 8 C 0.210 3.790 9 H 0.086 0.914 10 C -0.154 4.154 11 N -0.733 5.733 12 C 0.702 3.298 13 O -0.633 6.633 14 N -0.734 5.734 15 C 0.161 3.839 16 C 0.023 3.977 17 C -0.545 4.545 18 H 0.059 0.941 19 C 0.006 3.994 20 N -0.927 5.927 21 Si 0.965 3.035 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.167 0.833 29 H 0.181 0.819 30 H 0.157 0.843 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.406 0.594 35 H 0.406 0.594 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.009 0.991 39 H 0.008 0.992 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.399 23.690 -10.847 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.045 4.045 3 C -0.185 4.185 4 C -0.068 4.068 5 N -0.221 5.221 6 C -0.063 4.063 7 C -0.152 4.152 8 C 0.104 3.896 9 H 0.104 0.896 10 C -0.212 4.212 11 N -0.391 5.391 12 C 0.402 3.598 13 O -0.514 6.514 14 N -0.388 5.388 15 C 0.037 3.963 16 C -0.014 4.014 17 C -0.583 4.583 18 H 0.078 0.922 19 C -0.192 4.192 20 N -0.567 5.567 21 Si 0.790 3.210 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.203 1.203 25 H 0.100 0.900 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.185 0.815 29 H 0.198 0.802 30 H 0.174 0.826 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.244 0.756 35 H 0.241 0.759 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.423 23.478 -10.769 26.206 hybrid contribution 0.035 -1.004 0.531 1.137 sum -4.388 22.473 -10.238 25.082 Atomic orbital electron populations 1.21014 0.88707 1.04706 1.03770 1.20445 0.97985 0.91979 0.94066 1.22363 0.95314 0.99403 1.01371 1.23296 0.92738 0.96514 0.94222 1.67714 1.41959 0.99143 1.13235 1.22597 0.91254 0.96689 0.95794 1.20768 0.95320 0.95103 1.04056 1.19488 0.92483 0.82409 0.95230 0.89569 1.22154 1.02408 1.02097 0.94553 1.45177 1.10465 1.20600 1.62861 1.16075 0.85104 0.80434 0.78218 1.90857 1.14244 1.80116 1.66230 1.45240 1.09956 1.21606 1.62027 1.21075 0.96245 0.83731 0.95256 1.19134 0.93476 0.93440 0.95386 1.21497 0.93592 1.05302 1.37921 0.92235 1.25878 0.95253 1.01639 0.96479 1.70067 1.04193 1.36124 1.46301 0.85387 0.78890 0.78653 0.78066 1.18902 1.20226 1.20272 0.90005 0.88486 0.90760 0.81514 0.80248 0.82567 0.93236 0.89579 0.91624 0.75645 0.75879 0.93800 0.93650 0.97293 0.97398 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.31 71.24 0.66 -0.76 16 2 C -0.04 -0.56 5.92 -19.67 -0.12 -0.68 16 3 C -0.17 -2.07 9.82 22.36 0.22 -1.85 16 4 C 0.09 1.35 11.18 84.67 0.95 2.30 16 5 N -0.51 -10.65 10.36 -195.84 -2.03 -12.68 16 6 C 0.09 1.86 10.40 84.69 0.88 2.74 16 7 C -0.15 -2.84 5.07 -19.77 -0.10 -2.94 16 8 C 0.21 4.60 2.11 44.25 0.09 4.70 16 9 H 0.09 2.18 6.55 -2.39 -0.02 2.16 16 10 C -0.15 -3.05 9.30 71.98 0.67 -2.38 16 11 N -0.73 -18.35 5.00 -461.41 -2.31 -20.66 16 12 C 0.70 24.26 8.53 179.05 1.53 25.79 16 13 O -0.63 -26.74 16.01 -4.00 -0.06 -26.81 16 14 N -0.73 -26.04 5.56 -478.53 -2.66 -28.70 16 15 C 0.16 7.05 5.61 86.38 0.48 7.53 16 16 C 0.02 1.18 5.09 29.85 0.15 1.33 16 17 C -0.54 -30.62 9.11 25.60 0.23 -30.38 16 18 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 19 C 0.01 0.35 5.46 84.65 0.46 0.81 16 20 N -0.93 -54.64 13.29 21.45 0.28 -54.35 16 21 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 25 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.10 0.65 8.10 -2.39 -0.02 0.63 16 27 H 0.07 0.91 5.61 -2.38 -0.01 0.90 16 28 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 29 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 30 H 0.16 2.69 6.09 -2.91 -0.02 2.68 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.32 6.94 -2.39 -0.02 1.31 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.41 8.10 6.25 -92.70 -0.58 7.52 16 35 H 0.41 12.32 8.49 -92.71 -0.79 11.53 16 36 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 40 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -71.54 335.19 1.06 -70.48 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -0.30 Total: 20.65 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 6.12 Total: 6.20 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -6.71 Total: -116.40 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.06 Total: -26.81 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -71.54 1.06 -70.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612377651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.585 kcal (2) G-P(sol) polarization free energy of solvation -71.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds