Wall clock time and date at job start Mon Mar 30 2020 01:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38676 * 120.78681 * 2 1 4 4 C 1.38179 * 119.15974 * 180.02562 * 3 2 1 5 5 N 1.31887 * 120.76693 * 359.97438 * 4 3 2 6 6 C 1.31858 * 121.72688 * 0.03898 * 5 4 3 7 7 C 1.38224 * 120.75944 * 359.96084 * 6 5 4 8 8 C 1.50707 * 120.41553 * 180.29832 * 7 6 5 9 9 H 1.09003 * 109.46625 * 213.14559 * 8 7 6 10 10 C 1.52997 * 109.47304 * 93.14761 * 8 7 6 11 11 N 1.46498 * 109.46978 * 333.14460 * 8 7 6 12 12 C 1.34780 * 119.99569 * 209.29502 * 11 8 7 13 13 O 1.21586 * 120.00242 * 359.97438 * 12 11 8 14 14 N 1.34779 * 119.99569 * 180.02562 * 12 11 8 15 15 C 1.46505 * 119.99841 * 180.02562 * 14 12 11 16 16 C 1.52994 * 109.47093 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.47171 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00083 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99858 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99466 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00271 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47013 * 89.99801 * 21 19 17 23 23 H 1.48502 * 109.47337 * 209.99985 * 21 19 17 24 24 H 1.48501 * 109.46899 * 330.00055 * 21 19 17 25 25 H 1.08995 * 109.47776 * 269.98162 * 1 2 3 26 26 H 1.09004 * 109.47342 * 29.98092 * 1 2 3 27 27 H 1.09003 * 109.47494 * 149.97732 * 1 2 3 28 28 H 1.07999 * 120.41945 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.61912 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.61964 * 179.97438 * 6 5 4 31 31 H 1.08993 * 109.47183 * 179.97438 * 10 8 7 32 32 H 1.09009 * 109.46799 * 299.99750 * 10 8 7 33 33 H 1.08999 * 109.47386 * 59.99642 * 10 8 7 34 34 H 0.96995 * 120.00287 * 29.29850 * 11 8 7 35 35 H 0.97004 * 120.00078 * 0.02562 * 14 12 11 36 36 H 1.09002 * 109.46705 * 299.99939 * 15 14 12 37 37 H 1.08997 * 109.46694 * 59.99950 * 15 14 12 38 38 H 1.08996 * 109.47315 * 300.00066 * 16 15 14 39 39 H 1.09008 * 109.47087 * 59.99955 * 16 15 14 40 40 H 0.96996 * 119.99455 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1521 -0.0005 5 7 4.2402 0.0002 -0.0005 6 6 3.5983 -1.1516 -0.0008 7 6 2.2166 -1.1908 -0.0003 8 6 1.4908 -2.5116 0.0062 9 1 0.5616 -2.4182 -0.5559 10 6 1.1761 -2.9136 1.4485 11 7 2.3354 -3.5359 -0.6131 12 6 1.7702 -4.5799 -1.2513 13 8 0.5593 -4.6717 -1.3126 14 7 2.5472 -5.5225 -1.8206 15 6 1.9329 -6.6570 -2.5147 16 6 3.0285 -7.5717 -3.0659 17 6 2.3965 -8.7390 -3.7794 18 1 1.3210 -8.8201 -3.8346 19 6 3.1915 -9.7034 -4.3617 20 7 2.6399 -10.7223 -4.9839 21 14 5.0517 -9.5635 -4.2656 22 1 5.5376 -10.2543 -3.0441 23 1 5.6583 -10.1942 -5.4654 24 1 5.4381 -8.1307 -4.2108 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6966 2.1378 0.0004 29 1 4.1582 2.0755 -0.0010 30 1 4.1585 -2.0749 -0.0012 31 1 0.6508 -3.8686 1.4531 32 1 2.1054 -3.0069 2.0106 33 1 0.5477 -2.1514 1.9093 34 1 3.3014 -3.4629 -0.5638 35 1 3.5132 -5.4498 -1.7707 36 1 1.3096 -7.2158 -1.8166 37 1 1.3185 -6.2903 -3.3370 38 1 3.6514 -7.0126 -3.7641 39 1 3.6433 -7.9384 -2.2438 40 1 3.1992 -11.4006 -5.3939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612377653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:21 Heat of formation + Delta-G solvation = -5.662734 kcal Electronic energy + Delta-G solvation = -20759.009808 eV Core-core repulsion = 17573.438663 eV Total energy + Delta-G solvation = -3185.571145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.95422 -39.57631 -36.33626 -34.82535 -34.16910 -32.83127 -31.65334 -30.21840 -29.30098 -28.19012 -25.07369 -24.41058 -22.82525 -21.45572 -20.74820 -20.51620 -18.34330 -17.23615 -16.83038 -16.57528 -15.98000 -15.33693 -15.14372 -14.76972 -14.51266 -14.10859 -14.03179 -13.64877 -13.44886 -13.25082 -13.16646 -13.00101 -12.70776 -12.59125 -12.40101 -11.89129 -11.47287 -11.34365 -11.19614 -10.38603 -10.27648 -9.97663 -9.80862 -9.77125 -9.72849 -9.38585 -9.31662 -9.12732 -8.62124 -8.42098 -6.10248 -4.10199 0.75350 0.90547 2.86885 3.26099 3.33891 3.35119 3.43022 3.49217 4.01782 4.28946 4.36554 4.38621 4.47903 4.52102 4.68340 5.03753 5.08411 5.10205 5.12875 5.22813 5.23030 5.37026 5.48529 5.56185 5.64382 5.79641 5.96318 6.03527 6.09457 6.25073 6.34831 6.50016 6.59558 6.80459 7.00720 7.25074 7.27729 7.64801 7.68272 8.25511 8.46219 8.86443 8.94665 9.49964 11.02853 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029127 B = 0.003168 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.061017 B = 8836.826879 C = 9435.569022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.031 4.031 3 C -0.171 4.171 4 C 0.096 3.904 5 N -0.484 5.484 6 C 0.108 3.892 7 C -0.141 4.141 8 C 0.204 3.796 9 H 0.105 0.895 10 C -0.158 4.158 11 N -0.750 5.750 12 C 0.702 3.298 13 O -0.593 6.593 14 N -0.741 5.741 15 C 0.148 3.852 16 C -0.022 4.022 17 C -0.522 4.522 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.899 5.899 21 Si 0.882 3.118 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.266 1.266 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.136 0.864 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.392 0.608 35 H 0.392 0.608 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.022 0.978 39 H 0.017 0.983 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 24.662 13.149 27.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.039 4.039 3 C -0.191 4.191 4 C -0.060 4.060 5 N -0.193 5.193 6 C -0.050 4.050 7 C -0.144 4.144 8 C 0.098 3.902 9 H 0.123 0.877 10 C -0.216 4.216 11 N -0.408 5.408 12 C 0.402 3.598 13 O -0.471 6.471 14 N -0.395 5.395 15 C 0.026 3.974 16 C -0.060 4.060 17 C -0.561 4.561 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.537 5.537 21 Si 0.710 3.290 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.191 1.191 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.154 0.846 29 H 0.173 0.827 30 H 0.169 0.831 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.227 0.773 35 H 0.225 0.775 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.495 24.365 12.957 27.600 hybrid contribution 1.105 0.031 0.008 1.105 sum 1.600 24.395 12.964 27.672 Atomic orbital electron populations 1.20958 0.89995 1.03993 1.03230 1.20138 0.96945 0.92108 0.94751 1.22037 0.95624 0.98542 1.02858 1.22769 0.91819 0.96279 0.95171 1.67698 1.41087 0.98387 1.12124 1.22461 0.90977 0.96268 0.95261 1.20908 0.95406 0.95478 1.02582 1.19525 0.93764 0.82233 0.94657 0.87696 1.22179 1.02046 1.02584 0.94838 1.45295 1.09390 1.25342 1.60766 1.15988 0.85735 0.79717 0.78378 1.90899 1.12249 1.78237 1.65750 1.45534 1.09209 1.25633 1.59074 1.21386 0.96739 0.84236 0.95066 1.19798 0.94714 0.95262 0.96191 1.20919 0.95517 1.05170 1.34444 0.90581 1.25002 0.98760 0.94937 0.94606 1.69906 1.35711 1.11845 1.36258 0.86746 0.85894 0.78666 0.77728 1.20235 1.21292 1.19086 0.90102 0.90792 0.90178 0.84628 0.82718 0.83142 0.91054 0.92349 0.91693 0.77278 0.77545 0.92095 0.92123 0.96025 0.96452 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 9.67 36.00 0.35 -0.47 16 2 C -0.03 -0.26 5.92 -104.32 -0.62 -0.88 16 3 C -0.17 -1.27 9.82 -39.44 -0.39 -1.66 16 4 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 5 N -0.48 -5.15 10.36 -13.25 -0.14 -5.29 16 6 C 0.11 1.07 10.42 -17.55 -0.18 0.89 16 7 C -0.14 -1.36 5.06 -104.48 -0.53 -1.89 16 8 C 0.20 2.19 2.44 -69.08 -0.17 2.02 16 9 H 0.11 1.28 5.51 -51.93 -0.29 1.00 16 10 C -0.16 -1.52 9.50 37.16 0.35 -1.17 16 11 N -0.75 -8.95 4.96 -59.81 -0.30 -9.25 16 12 C 0.70 11.54 8.56 -86.91 -0.74 10.80 16 13 O -0.59 -12.04 15.93 5.29 0.08 -11.96 16 14 N -0.74 -12.23 5.56 -65.22 -0.36 -12.60 16 15 C 0.15 3.05 5.61 -4.04 -0.02 3.02 16 16 C -0.02 -0.50 4.15 -27.89 -0.12 -0.61 16 17 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 18 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 21 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 27 H 0.08 0.60 6.14 -51.93 -0.32 0.28 16 28 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 29 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.15 1.24 6.15 -52.49 -0.32 0.92 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.39 3.69 6.38 -40.82 -0.26 3.43 16 35 H 0.39 5.35 8.49 -40.82 -0.35 5.00 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 39 H 0.02 0.38 7.57 -51.92 -0.39 -0.01 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -34.10 333.27 -7.97 -42.06 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.69 Total: 4.67 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.69 Total: -2.44 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.02 Total: -53.78 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.10 -7.97 -42.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612377653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.402 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds