Wall clock time and date at job start Mon Mar 30 2020 01:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38676 * 120.78681 * 2 1 4 4 C 1.38179 * 119.15974 * 180.02562 * 3 2 1 5 5 N 1.31887 * 120.76693 * 359.97438 * 4 3 2 6 6 C 1.31858 * 121.72688 * 0.03898 * 5 4 3 7 7 C 1.38224 * 120.75944 * 359.96084 * 6 5 4 8 8 C 1.50707 * 120.41553 * 180.29832 * 7 6 5 9 9 H 1.09003 * 109.46625 * 213.14559 * 8 7 6 10 10 C 1.52997 * 109.47304 * 93.14761 * 8 7 6 11 11 N 1.46498 * 109.46978 * 333.14460 * 8 7 6 12 12 C 1.34780 * 119.99569 * 209.29502 * 11 8 7 13 13 O 1.21586 * 120.00242 * 359.97438 * 12 11 8 14 14 N 1.34779 * 119.99569 * 180.02562 * 12 11 8 15 15 C 1.46505 * 119.99841 * 180.02562 * 14 12 11 16 16 C 1.52994 * 109.47093 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.47171 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00083 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99858 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99466 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00271 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47013 * 89.99801 * 21 19 17 23 23 H 1.48502 * 109.47337 * 209.99985 * 21 19 17 24 24 H 1.48501 * 109.46899 * 330.00055 * 21 19 17 25 25 H 1.08995 * 109.47776 * 269.98162 * 1 2 3 26 26 H 1.09004 * 109.47342 * 29.98092 * 1 2 3 27 27 H 1.09003 * 109.47494 * 149.97732 * 1 2 3 28 28 H 1.07999 * 120.41945 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.61912 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.61964 * 179.97438 * 6 5 4 31 31 H 1.08993 * 109.47183 * 179.97438 * 10 8 7 32 32 H 1.09009 * 109.46799 * 299.99750 * 10 8 7 33 33 H 1.08999 * 109.47386 * 59.99642 * 10 8 7 34 34 H 0.96995 * 120.00287 * 29.29850 * 11 8 7 35 35 H 0.97004 * 120.00078 * 0.02562 * 14 12 11 36 36 H 1.09002 * 109.46705 * 299.99939 * 15 14 12 37 37 H 1.08997 * 109.46694 * 59.99950 * 15 14 12 38 38 H 1.08996 * 109.47315 * 300.00066 * 16 15 14 39 39 H 1.09008 * 109.47087 * 59.99955 * 16 15 14 40 40 H 0.96996 * 119.99455 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1521 -0.0005 5 7 4.2402 0.0002 -0.0005 6 6 3.5983 -1.1516 -0.0008 7 6 2.2166 -1.1908 -0.0003 8 6 1.4908 -2.5116 0.0062 9 1 0.5616 -2.4182 -0.5559 10 6 1.1761 -2.9136 1.4485 11 7 2.3354 -3.5359 -0.6131 12 6 1.7702 -4.5799 -1.2513 13 8 0.5593 -4.6717 -1.3126 14 7 2.5472 -5.5225 -1.8206 15 6 1.9329 -6.6570 -2.5147 16 6 3.0285 -7.5717 -3.0659 17 6 2.3965 -8.7390 -3.7794 18 1 1.3210 -8.8201 -3.8346 19 6 3.1915 -9.7034 -4.3617 20 7 2.6399 -10.7223 -4.9839 21 14 5.0517 -9.5635 -4.2656 22 1 5.5376 -10.2543 -3.0441 23 1 5.6583 -10.1942 -5.4654 24 1 5.4381 -8.1307 -4.2108 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6966 2.1378 0.0004 29 1 4.1582 2.0755 -0.0010 30 1 4.1585 -2.0749 -0.0012 31 1 0.6508 -3.8686 1.4531 32 1 2.1054 -3.0069 2.0106 33 1 0.5477 -2.1514 1.9093 34 1 3.3014 -3.4629 -0.5638 35 1 3.5132 -5.4498 -1.7707 36 1 1.3096 -7.2158 -1.8166 37 1 1.3185 -6.2903 -3.3370 38 1 3.6514 -7.0126 -3.7641 39 1 3.6433 -7.9384 -2.2438 40 1 3.1992 -11.4006 -5.3939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612377653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:20 Heat of formation + Delta-G solvation = -30.290940 kcal Electronic energy + Delta-G solvation = -20760.077767 eV Core-core repulsion = 17573.438663 eV Total energy + Delta-G solvation = -3186.639104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74379 -40.75451 -37.40218 -36.37046 -34.96949 -34.72137 -32.80878 -31.55753 -30.37357 -28.77470 -26.77976 -25.28763 -23.66156 -22.68542 -22.19537 -21.66160 -19.61404 -18.91910 -18.02076 -17.29700 -16.89602 -16.67573 -16.33438 -16.01076 -15.59804 -15.40260 -15.30216 -15.07208 -14.61403 -14.35779 -14.02147 -13.83280 -13.59144 -13.48890 -13.33934 -13.11147 -13.02847 -12.63855 -12.18238 -12.15436 -12.02636 -11.75688 -11.53272 -11.29323 -10.78013 -10.51397 -10.39573 -10.34125 -9.99676 -9.77769 -8.29308 -6.36331 0.10415 0.27057 1.39823 1.42394 1.53591 1.68231 2.14340 2.37579 2.79892 3.05897 3.26584 3.37140 3.65501 3.79886 3.89238 3.99113 4.26306 4.33313 4.37292 4.46803 4.50627 4.60301 4.68279 4.75617 4.77227 4.81132 4.87324 4.98341 5.15949 5.16400 5.25269 5.35217 5.42747 5.45235 5.53241 5.67050 5.74814 5.98490 6.24071 6.71114 6.99864 7.08927 7.28093 7.57327 8.87577 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029127 B = 0.003168 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.061017 B = 8836.826879 C = 9435.569022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.037 4.037 3 C -0.166 4.166 4 C 0.088 3.912 5 N -0.511 5.511 6 C 0.096 3.904 7 C -0.151 4.151 8 C 0.206 3.794 9 H 0.088 0.912 10 C -0.152 4.152 11 N -0.731 5.731 12 C 0.701 3.299 13 O -0.635 6.635 14 N -0.732 5.732 15 C 0.165 3.835 16 C -0.012 4.012 17 C -0.538 4.538 18 H 0.030 0.970 19 C 0.004 3.996 20 N -0.951 5.951 21 Si 0.959 3.041 22 H -0.265 1.265 23 H -0.287 1.287 24 H -0.237 1.237 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.166 0.834 29 H 0.180 0.820 30 H 0.160 0.840 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.407 0.593 35 H 0.410 0.590 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 27.291 14.368 30.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.046 4.046 3 C -0.186 4.186 4 C -0.068 4.068 5 N -0.220 5.220 6 C -0.061 4.061 7 C -0.153 4.153 8 C 0.100 3.900 9 H 0.106 0.894 10 C -0.210 4.210 11 N -0.389 5.389 12 C 0.401 3.599 13 O -0.516 6.516 14 N -0.387 5.387 15 C 0.041 3.959 16 C -0.050 4.050 17 C -0.577 4.577 18 H 0.048 0.952 19 C -0.193 4.193 20 N -0.591 5.591 21 Si 0.782 3.218 22 H -0.190 1.190 23 H -0.213 1.213 24 H -0.160 1.160 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.183 0.817 29 H 0.197 0.803 30 H 0.177 0.823 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.245 0.755 35 H 0.246 0.754 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.729 27.050 14.212 30.678 hybrid contribution 0.304 -0.710 -0.361 0.852 sum 3.032 26.340 13.851 29.914 Atomic orbital electron populations 1.21000 0.88859 1.04099 1.04144 1.20436 0.97916 0.92106 0.94128 1.22349 0.95369 0.99365 1.01482 1.23275 0.92670 0.96563 0.94267 1.67717 1.41916 0.99136 1.13253 1.22621 0.91151 0.96731 0.95593 1.20785 0.95405 0.95107 1.04037 1.19558 0.93058 0.82531 0.94805 0.89389 1.22118 1.02583 1.01970 0.94356 1.45131 1.10399 1.24047 1.59293 1.16085 0.85097 0.80312 0.78384 1.90876 1.14253 1.79257 1.67247 1.45141 1.10069 1.24674 1.58824 1.20877 0.95816 0.84977 0.94277 1.19644 0.95122 0.93765 0.96440 1.21259 0.93846 1.07393 1.35189 0.95211 1.26077 1.05124 0.94205 0.93907 1.70077 1.38177 1.13136 1.37734 0.85536 0.78003 0.80330 0.77979 1.18968 1.21313 1.16041 0.88713 0.89168 0.91596 0.81691 0.80321 0.82264 0.93268 0.91398 0.89830 0.75491 0.75450 0.93888 0.94064 0.94573 0.94589 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.67 71.23 0.69 -0.70 16 2 C -0.04 -0.55 5.92 -19.67 -0.12 -0.67 16 3 C -0.17 -1.99 9.82 22.36 0.22 -1.77 16 4 C 0.09 1.27 11.18 84.67 0.95 2.21 16 5 N -0.51 -9.91 10.36 -195.84 -2.03 -11.94 16 6 C 0.10 1.74 10.42 84.69 0.88 2.62 16 7 C -0.15 -2.67 5.06 -19.77 -0.10 -2.77 16 8 C 0.21 4.24 2.44 44.25 0.11 4.34 16 9 H 0.09 2.16 5.51 -2.39 -0.01 2.14 16 10 C -0.15 -2.77 9.50 71.98 0.68 -2.08 16 11 N -0.73 -16.61 4.96 -461.40 -2.29 -18.90 16 12 C 0.70 22.75 8.56 179.05 1.53 24.28 16 13 O -0.63 -26.27 15.93 -3.99 -0.06 -26.33 16 14 N -0.73 -23.33 5.56 -478.53 -2.66 -25.99 16 15 C 0.17 6.82 5.61 86.38 0.48 7.30 16 16 C -0.01 -0.53 4.15 29.85 0.12 -0.41 16 17 C -0.54 -30.88 9.66 25.60 0.25 -30.64 16 18 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 19 C 0.00 0.22 5.47 84.66 0.46 0.69 16 20 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 21 Si 0.96 42.49 27.47 68.60 1.88 44.38 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 23 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.09 0.70 8.10 -2.38 -0.02 0.68 16 27 H 0.07 0.94 6.14 -2.39 -0.01 0.93 16 28 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 29 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 30 H 0.16 2.34 6.15 -2.91 -0.02 2.32 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.41 6.87 6.38 -92.71 -0.59 6.28 16 35 H 0.41 10.12 8.49 -92.71 -0.79 9.33 16 36 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.04 1.52 7.20 -2.39 -0.02 1.51 16 39 H 0.04 1.49 7.57 -2.38 -0.02 1.47 16 40 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -76.16 333.27 0.94 -75.22 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -0.37 Total: 20.41 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 6.16 Total: 2.42 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -6.68 Total: -116.11 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.06 Total: -26.33 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.38 kcal Total: -76.16 0.94 -75.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612377653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.930 kcal (2) G-P(sol) polarization free energy of solvation -76.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds