Wall clock time and date at job start Mon Mar 30 2020 01:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38673 * 120.41889 * 2 1 4 4 C 1.38626 * 118.42181 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.15896 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.61573 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.46949 * 95.00017 * 6 5 4 8 8 C 1.46508 * 120.00138 * 270.00242 * 7 6 5 9 9 C 1.34777 * 120.00124 * 89.99763 * 7 6 5 10 10 O 1.21588 * 119.99821 * 0.02562 * 9 7 6 11 11 N 1.34775 * 120.00261 * 180.02562 * 9 7 6 12 12 C 1.46495 * 120.00211 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.47142 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.46862 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00294 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99844 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00054 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00039 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47225 * 59.99995 * 18 16 14 20 20 H 1.48501 * 109.47007 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47202 * 299.99463 * 18 16 14 22 22 N 1.31854 * 120.76756 * 0.25243 * 5 4 3 23 23 C 1.31892 * 121.72001 * 359.47021 * 22 5 4 24 24 H 1.09004 * 109.47531 * 89.99854 * 1 2 3 25 25 H 1.09007 * 109.47201 * 209.99847 * 1 2 3 26 26 H 1.08996 * 109.47162 * 329.99598 * 1 2 3 27 27 H 1.07998 * 120.78825 * 0.02562 * 3 2 1 28 28 H 1.07996 * 120.41975 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47318 * 214.99404 * 6 5 4 30 30 H 1.09000 * 109.47161 * 335.00034 * 6 5 4 31 31 H 1.08991 * 109.46955 * 89.99639 * 8 7 6 32 32 H 1.08995 * 109.47080 * 209.99999 * 8 7 6 33 33 H 1.09001 * 109.46349 * 329.99612 * 8 7 6 34 34 H 0.97007 * 119.99949 * 0.02562 * 11 9 7 35 35 H 1.08998 * 109.47373 * 300.00253 * 12 11 9 36 36 H 1.09005 * 109.47099 * 60.00084 * 12 11 9 37 37 H 1.08993 * 109.47241 * 299.99919 * 13 12 11 38 38 H 1.09000 * 109.47006 * 60.00563 * 13 12 11 39 39 H 0.97001 * 120.00018 * 180.02562 * 17 16 14 40 40 H 1.08002 * 119.61205 * 180.26679 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2255 -0.0823 -0.0016 6 6 5.7312 -0.1468 -0.0028 7 7 6.2149 -0.2887 1.3727 8 6 6.5110 0.9031 2.1717 9 6 6.3876 -1.5155 1.9033 10 8 6.1422 -2.5047 1.2401 11 7 6.8321 -1.6461 3.1689 12 6 7.0192 -2.9796 3.7457 13 6 7.5280 -2.8470 5.1826 14 6 7.7210 -4.2188 5.7757 15 1 7.5023 -5.0974 5.1870 16 6 8.1759 -4.3523 7.0704 17 7 8.4418 -3.2825 7.7876 18 14 8.4159 -6.0528 7.8054 19 1 9.4082 -6.8060 6.9971 20 1 8.9096 -5.9241 9.2000 21 1 7.1212 -6.7802 7.8034 22 7 3.5254 -1.1996 -0.0071 23 6 2.2066 -1.1916 -0.0014 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6889 2.1423 0.0004 28 1 4.1734 2.0592 -0.0001 29 1 6.0577 -1.0032 -0.5928 30 1 6.1338 0.7683 -0.4370 31 1 5.6154 1.2101 2.7117 32 1 7.3044 0.6755 2.8835 33 1 6.8335 1.7104 1.5141 34 1 7.0275 -0.8569 3.6981 35 1 6.0685 -3.5128 3.7443 36 1 7.7471 -3.5332 3.1526 37 1 8.4787 -2.3140 5.1836 38 1 6.8004 -2.2933 5.7760 39 1 8.7622 -3.3764 8.6983 40 1 1.6672 -2.1273 -0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616052490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:57 Heat of formation + Delta-G solvation = 1.288855 kcal Electronic energy + Delta-G solvation = -20811.293156 eV Core-core repulsion = 17626.023454 eV Total energy + Delta-G solvation = -3185.269702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52618 -39.46412 -35.75324 -34.67236 -33.74698 -32.75857 -32.10892 -29.84433 -28.71197 -26.65755 -25.51082 -24.22447 -23.44314 -21.72581 -20.90013 -19.58663 -17.76434 -16.75201 -16.56794 -16.38195 -15.89869 -15.36478 -15.00471 -14.49490 -14.41679 -13.87319 -13.74875 -13.50466 -13.24110 -12.98856 -12.81963 -12.67978 -12.62065 -12.48454 -12.21833 -11.76265 -11.74392 -11.10866 -10.97375 -10.60651 -10.24817 -9.89280 -9.77155 -9.49316 -9.44068 -9.23108 -8.92784 -8.62552 -8.42090 -8.13396 -6.05189 -4.07494 0.92176 1.19403 2.97027 3.34605 3.37805 3.41855 3.67372 3.79530 4.23033 4.36628 4.50093 4.57071 4.64490 4.76272 4.84239 5.06276 5.14288 5.24327 5.28971 5.31802 5.34884 5.45315 5.63613 5.64677 5.66845 5.79788 5.95469 6.09138 6.33742 6.48022 6.58186 6.63249 6.84808 7.11252 7.21274 7.61189 7.68880 7.94412 8.02853 8.30845 8.47233 8.97649 9.11720 9.56916 11.06555 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024468 B = 0.003250 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.086301 B = 8612.339544 C = 9079.955385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.143 4.143 3 C -0.082 4.082 4 C -0.160 4.160 5 C 0.105 3.895 6 C 0.185 3.815 7 N -0.635 5.635 8 C 0.080 3.920 9 C 0.699 3.301 10 O -0.576 6.576 11 N -0.740 5.740 12 C 0.140 3.860 13 C 0.014 3.986 14 C -0.520 4.520 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.276 1.276 22 N -0.447 5.447 23 C 0.099 3.901 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.391 0.609 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.262 0.738 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.498 14.438 -15.822 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.145 4.145 3 C -0.108 4.108 4 C -0.180 4.180 5 C -0.034 4.034 6 C 0.060 3.940 7 N -0.374 5.374 8 C -0.063 4.063 9 C 0.400 3.600 10 O -0.452 6.452 11 N -0.395 5.395 12 C 0.018 3.982 13 C -0.024 4.024 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 N -0.155 5.155 23 C -0.058 4.058 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.226 0.774 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.123 12.910 -16.111 23.451 hybrid contribution -0.313 0.497 0.916 1.088 sum -11.436 13.407 -15.195 23.269 Atomic orbital electron populations 1.20709 0.90347 1.03124 1.02424 1.20976 0.97536 0.94421 1.01588 1.21421 0.94018 0.98012 0.97353 1.21960 0.95139 0.98842 1.02058 1.21811 0.97540 0.88388 0.95694 1.20056 0.86818 1.03715 0.83397 1.46988 1.71002 1.05177 1.14199 1.21718 1.00736 0.87781 0.96104 1.16000 0.78599 0.82981 0.82456 1.90921 1.57283 1.36060 1.60957 1.45672 1.70508 1.10993 1.12345 1.21565 1.00107 0.80444 0.96118 1.19309 0.96514 0.98093 0.88440 1.21030 1.44569 0.92152 0.98104 0.92255 1.24993 0.95282 0.96967 0.97056 1.69949 1.45333 1.28413 1.09778 0.86570 0.78679 0.84266 0.78004 1.20098 1.21286 1.20107 1.67662 1.07688 1.30848 1.09306 1.22771 0.89966 0.97440 0.95669 0.91013 0.91117 0.91465 0.85091 0.85000 0.88088 0.89252 0.93142 0.90981 0.91066 0.77414 0.92906 0.92825 0.96039 0.96104 0.92852 0.82987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.04 36.00 0.36 -0.38 16 2 C -0.14 -1.43 5.90 -104.48 -0.62 -2.05 16 3 C -0.08 -0.76 9.86 -39.28 -0.39 -1.15 16 4 C -0.16 -1.59 9.72 -39.44 -0.38 -1.97 16 5 C 0.11 1.38 6.36 -82.58 -0.53 0.85 16 6 C 0.18 2.30 5.76 -5.19 -0.03 2.27 16 7 N -0.63 -9.05 2.86 -188.74 -0.54 -9.59 16 8 C 0.08 0.82 10.25 59.85 0.61 1.43 16 9 C 0.70 13.37 8.28 -86.92 -0.72 12.65 16 10 O -0.58 -13.23 15.92 5.29 0.08 -13.15 16 11 N -0.74 -14.21 5.42 -65.23 -0.35 -14.57 16 12 C 0.14 3.19 5.61 -4.04 -0.02 3.17 16 13 C 0.01 0.36 5.09 -27.88 -0.14 0.22 16 14 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 18 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 N -0.45 -6.95 10.27 -9.47 -0.10 -7.05 16 23 C 0.10 1.26 10.86 -17.55 -0.19 1.07 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.46 8.09 -51.92 -0.42 0.04 16 26 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 27 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.10 1.48 7.42 -51.93 -0.39 1.09 16 30 H 0.09 0.74 7.79 -51.93 -0.40 0.34 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.74 6.36 -51.93 -0.33 0.41 16 33 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 34 H 0.39 6.56 6.20 -40.82 -0.25 6.31 16 35 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -35.41 341.85 -8.46 -43.87 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.97 Total: 1.83 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -2.45 Total: 2.57 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.25 Total: -57.02 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.41 -8.46 -43.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616052490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.159 kcal (2) G-P(sol) polarization free energy of solvation -35.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds