Wall clock time and date at job start Mon Mar 30 2020 01:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38673 * 120.41889 * 2 1 4 4 C 1.38626 * 118.42181 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.15896 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.61573 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.46949 * 95.00017 * 6 5 4 8 8 C 1.46508 * 120.00138 * 270.00242 * 7 6 5 9 9 C 1.34777 * 120.00124 * 89.99763 * 7 6 5 10 10 O 1.21588 * 119.99821 * 0.02562 * 9 7 6 11 11 N 1.34775 * 120.00261 * 180.02562 * 9 7 6 12 12 C 1.46495 * 120.00211 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.47142 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.46862 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00294 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99844 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00054 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00039 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47225 * 59.99995 * 18 16 14 20 20 H 1.48501 * 109.47007 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47202 * 299.99463 * 18 16 14 22 22 N 1.31854 * 120.76756 * 0.25243 * 5 4 3 23 23 C 1.31892 * 121.72001 * 359.47021 * 22 5 4 24 24 H 1.09004 * 109.47531 * 89.99854 * 1 2 3 25 25 H 1.09007 * 109.47201 * 209.99847 * 1 2 3 26 26 H 1.08996 * 109.47162 * 329.99598 * 1 2 3 27 27 H 1.07998 * 120.78825 * 0.02562 * 3 2 1 28 28 H 1.07996 * 120.41975 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47318 * 214.99404 * 6 5 4 30 30 H 1.09000 * 109.47161 * 335.00034 * 6 5 4 31 31 H 1.08991 * 109.46955 * 89.99639 * 8 7 6 32 32 H 1.08995 * 109.47080 * 209.99999 * 8 7 6 33 33 H 1.09001 * 109.46349 * 329.99612 * 8 7 6 34 34 H 0.97007 * 119.99949 * 0.02562 * 11 9 7 35 35 H 1.08998 * 109.47373 * 300.00253 * 12 11 9 36 36 H 1.09005 * 109.47099 * 60.00084 * 12 11 9 37 37 H 1.08993 * 109.47241 * 299.99919 * 13 12 11 38 38 H 1.09000 * 109.47006 * 60.00563 * 13 12 11 39 39 H 0.97001 * 120.00018 * 180.02562 * 17 16 14 40 40 H 1.08002 * 119.61205 * 180.26679 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2255 -0.0823 -0.0016 6 6 5.7312 -0.1468 -0.0028 7 7 6.2149 -0.2887 1.3727 8 6 6.5110 0.9031 2.1717 9 6 6.3876 -1.5155 1.9033 10 8 6.1422 -2.5047 1.2401 11 7 6.8321 -1.6461 3.1689 12 6 7.0192 -2.9796 3.7457 13 6 7.5280 -2.8470 5.1826 14 6 7.7210 -4.2188 5.7757 15 1 7.5023 -5.0974 5.1870 16 6 8.1759 -4.3523 7.0704 17 7 8.4418 -3.2825 7.7876 18 14 8.4159 -6.0528 7.8054 19 1 9.4082 -6.8060 6.9971 20 1 8.9096 -5.9241 9.2000 21 1 7.1212 -6.7802 7.8034 22 7 3.5254 -1.1996 -0.0071 23 6 2.2066 -1.1916 -0.0014 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6889 2.1423 0.0004 28 1 4.1734 2.0592 -0.0001 29 1 6.0577 -1.0032 -0.5928 30 1 6.1338 0.7683 -0.4370 31 1 5.6154 1.2101 2.7117 32 1 7.3044 0.6755 2.8835 33 1 6.8335 1.7104 1.5141 34 1 7.0275 -0.8569 3.6981 35 1 6.0685 -3.5128 3.7443 36 1 7.7471 -3.5332 3.1526 37 1 8.4787 -2.3140 5.1836 38 1 6.8004 -2.2933 5.7760 39 1 8.7622 -3.3764 8.6983 40 1 1.6672 -2.1273 -0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616052490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:57 Heat of formation + Delta-G solvation = -22.764286 kcal Electronic energy + Delta-G solvation = -20812.336178 eV Core-core repulsion = 17626.023454 eV Total energy + Delta-G solvation = -3186.312724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.51515 -40.74270 -37.06359 -36.38820 -34.94869 -34.41087 -33.00865 -31.53296 -29.77031 -27.62630 -26.93764 -25.70764 -24.30849 -23.02703 -22.42222 -21.01196 -19.09047 -18.48901 -17.67405 -17.51293 -17.24113 -16.50059 -16.43667 -15.98488 -15.60436 -15.25720 -15.00565 -14.78760 -14.26342 -14.19403 -14.01158 -13.72839 -13.49833 -13.38765 -13.29684 -13.15377 -12.92688 -12.66210 -12.53283 -12.45673 -12.23136 -11.65687 -11.49105 -11.12352 -10.68653 -10.60462 -10.36258 -10.09010 -9.76399 -9.49276 -8.24546 -6.35129 0.09815 0.40977 1.41077 1.44035 1.51817 1.74725 2.20678 2.40607 2.85784 3.09848 3.16977 3.40402 3.81295 3.94328 4.05571 4.10708 4.27452 4.35941 4.46665 4.48802 4.49385 4.64712 4.73973 4.79820 4.81324 4.83993 4.88788 4.91501 5.16010 5.19091 5.30149 5.36393 5.51567 5.56806 5.57308 5.77553 5.83896 5.92247 6.16512 6.77072 7.02406 7.18059 7.33986 7.63031 8.87336 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024468 B = 0.003250 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.086301 B = 8612.339544 C = 9079.955385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.138 4.138 3 C -0.084 4.084 4 C -0.147 4.147 5 C 0.077 3.923 6 C 0.183 3.817 7 N -0.625 5.625 8 C 0.073 3.927 9 C 0.693 3.307 10 O -0.623 6.623 11 N -0.736 5.736 12 C 0.162 3.838 13 C 0.027 3.973 14 C -0.549 4.549 15 H 0.057 0.943 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.966 3.034 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.269 1.269 22 N -0.502 5.502 23 C 0.068 3.932 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.168 0.832 28 H 0.170 0.830 29 H 0.068 0.932 30 H 0.140 0.860 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.404 0.596 35 H 0.035 0.965 36 H 0.042 0.958 37 H 0.010 0.990 38 H 0.006 0.994 39 H 0.267 0.733 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.186 16.737 -16.034 26.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.141 4.141 3 C -0.109 4.109 4 C -0.167 4.167 5 C -0.063 4.063 6 C 0.059 3.941 7 N -0.363 5.363 8 C -0.069 4.069 9 C 0.394 3.606 10 O -0.503 6.503 11 N -0.393 5.393 12 C 0.038 3.962 13 C -0.010 4.010 14 C -0.588 4.588 15 H 0.075 0.925 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.790 3.210 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.194 1.194 22 N -0.211 5.211 23 C -0.089 4.089 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.185 0.815 28 H 0.187 0.813 29 H 0.086 0.914 30 H 0.158 0.842 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.241 0.759 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.075 0.925 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.820 15.279 -16.337 25.299 hybrid contribution -0.156 -0.122 0.931 0.952 sum -11.976 15.157 -15.407 24.708 Atomic orbital electron populations 1.20773 0.88093 1.03960 1.03534 1.21312 0.99171 0.93854 0.99722 1.21907 0.94005 0.99026 0.96010 1.22302 0.95832 0.98742 0.99844 1.21954 0.97531 0.89190 0.97581 1.20301 0.87245 1.04640 0.81906 1.47027 1.69625 1.04499 1.15106 1.22026 1.01090 0.87048 0.96706 1.16216 0.78276 0.84230 0.81908 1.90886 1.59128 1.38322 1.61947 1.45377 1.70977 1.10035 1.12898 1.21027 0.98562 0.82144 0.94488 1.19094 0.95446 0.96793 0.89674 1.21427 1.45229 0.93201 0.98906 0.92469 1.25869 0.94641 1.01185 0.97353 1.70049 1.45664 1.30580 1.10223 0.85489 0.78895 0.79216 0.77390 1.19314 1.20319 1.19428 1.67535 1.09301 1.33129 1.11109 1.22943 0.89608 0.98894 0.97495 0.89628 0.91195 0.89717 0.81464 0.81260 0.91383 0.84239 0.92424 0.91302 0.86735 0.75908 0.94647 0.93957 0.97151 0.97552 0.92456 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.04 71.23 0.71 -0.51 16 2 C -0.14 -2.57 5.90 -19.78 -0.12 -2.69 16 3 C -0.08 -1.27 9.86 22.47 0.22 -1.05 16 4 C -0.15 -2.47 9.72 22.36 0.22 -2.25 16 5 C 0.08 1.94 6.36 42.56 0.27 2.21 16 6 C 0.18 4.37 5.76 85.63 0.49 4.87 16 7 N -0.63 -17.23 2.86 -869.30 -2.48 -19.72 16 8 C 0.07 1.29 10.25 127.77 1.31 2.59 16 9 C 0.69 27.12 8.28 179.05 1.48 28.60 16 10 O -0.62 -30.07 15.92 -3.99 -0.06 -30.14 16 11 N -0.74 -28.91 5.42 -478.54 -2.59 -31.51 16 12 C 0.16 7.67 5.61 86.38 0.48 8.16 16 13 C 0.03 1.45 5.09 29.85 0.15 1.61 16 14 C -0.55 -31.85 9.11 25.60 0.23 -31.62 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 16 C 0.01 0.48 5.46 84.65 0.46 0.94 16 17 N -0.93 -55.13 13.29 21.45 0.28 -54.84 16 18 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 N -0.50 -16.21 10.27 -183.87 -1.89 -18.10 16 23 C 0.07 1.77 10.86 84.67 0.92 2.69 16 24 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.82 8.09 -2.38 -0.02 0.80 16 26 H 0.08 0.70 8.10 -2.39 -0.02 0.68 16 27 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 28 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 29 H 0.07 2.08 7.42 -2.39 -0.02 2.06 16 30 H 0.14 1.82 7.79 -2.39 -0.02 1.80 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.27 6.36 -2.39 -0.02 1.26 16 33 H 0.11 1.06 7.89 -2.39 -0.02 1.04 16 34 H 0.40 13.59 6.20 -92.70 -0.58 13.02 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.04 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 40 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -80.38 341.85 2.58 -77.80 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.46 Total: 16.34 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 6.84 Total: 13.55 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -6.68 Total: -124.17 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.06 Total: -30.14 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -80.38 2.58 -77.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616052490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.038 kcal (2) G-P(sol) polarization free energy of solvation -80.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds