Wall clock time and date at job start Mon Mar 30 2020 02:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38224 * 120.42070 * 2 1 4 4 N 1.31855 * 120.76539 * 179.72908 * 3 2 1 5 5 C 1.31886 * 121.72176 * 0.58520 * 4 3 2 6 6 C 1.38179 * 120.76799 * 359.68222 * 5 4 3 7 7 C 1.38630 * 120.42049 * 180.28399 * 2 1 3 8 8 C 1.50702 * 120.78722 * 359.95311 * 7 2 1 9 9 N 1.46500 * 109.47243 * 80.00147 * 8 7 2 10 10 C 1.34778 * 119.99879 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00039 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99847 * 180.02562 * 10 9 8 13 13 H 1.09007 * 109.46746 * 320.00012 * 12 10 9 14 14 N 1.46899 * 109.47099 * 200.00275 * 12 10 9 15 15 C 1.52994 * 109.47123 * 79.99745 * 12 10 9 16 16 C 1.53003 * 109.47167 * 184.99973 * 15 12 10 17 17 C 1.50704 * 109.47252 * 180.02562 * 16 15 12 18 18 H 1.07997 * 120.00024 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99984 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99943 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00129 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47046 * 89.99934 * 21 19 17 23 23 H 1.48500 * 109.46994 * 209.99888 * 21 19 17 24 24 H 1.48497 * 109.46819 * 329.99533 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.71769 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.71869 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.71850 * 1 2 3 28 28 H 1.08005 * 119.61789 * 0.03134 * 3 2 1 29 29 H 1.07997 * 119.61697 * 179.70405 * 5 4 3 30 30 H 1.08004 * 120.42114 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47368 * 200.00443 * 8 7 2 32 32 H 1.09000 * 109.47007 * 320.00330 * 8 7 2 33 33 H 0.97004 * 120.00016 * 359.97438 * 9 8 7 34 34 H 1.00903 * 110.99515 * 299.99495 * 14 12 10 35 35 H 1.00895 * 111.00115 * 63.95231 * 14 12 10 36 36 H 1.08999 * 109.47562 * 305.00185 * 15 12 10 37 37 H 1.08998 * 109.47547 * 65.00056 * 15 12 10 38 38 H 1.08999 * 109.47053 * 300.00524 * 16 15 12 39 39 H 1.09006 * 109.46893 * 60.00264 * 16 15 12 40 40 H 0.96997 * 119.99826 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 0.0054 5 6 4.2257 0.0823 -0.0006 6 6 3.5948 -1.1471 -0.0061 7 6 2.2090 -1.1954 -0.0059 8 6 1.4831 -2.5161 -0.0114 9 7 1.0368 -2.8224 -1.3727 10 6 0.3614 -3.9623 -1.6200 11 8 0.1228 -4.7341 -0.7155 12 6 -0.0972 -4.2776 -3.0205 13 1 -0.4608 -3.3673 -3.4974 14 7 -1.1796 -5.2695 -2.9696 15 6 1.0746 -4.8422 -3.8259 16 6 0.6433 -5.0456 -5.2797 17 6 1.7974 -5.6024 -6.0729 18 1 2.7440 -5.7917 -5.5887 19 6 1.6452 -5.8689 -7.4171 20 7 0.4926 -5.6378 -8.0068 21 14 3.0755 -6.5597 -8.4002 22 1 3.0362 -8.0435 -8.3553 23 1 2.9730 -6.1042 -9.8099 24 1 4.3543 -6.0804 -7.8169 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3633 -0.8875 -0.5182 27 1 -0.3633 0.8925 -0.5095 28 1 1.6675 2.1277 0.0005 29 1 5.3046 0.1285 -0.0007 30 1 4.1738 -2.0588 -0.0106 31 1 2.1546 -3.3013 0.3361 32 1 0.6187 -2.4584 0.6500 33 1 1.2274 -2.2049 -2.0961 34 1 -0.8673 -6.1232 -2.5315 35 1 -1.9900 -4.8966 -2.4983 36 1 1.9107 -4.1439 -3.7893 37 1 1.3808 -5.7980 -3.4007 38 1 -0.1928 -5.7440 -5.3163 39 1 0.3372 -4.0898 -5.7050 40 1 0.3854 -5.8257 -8.9524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691615207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:21 Heat of formation + Delta-G solvation = -22.335763 kcal Electronic energy + Delta-G solvation = -20823.297890 eV Core-core repulsion = 17637.003748 eV Total energy + Delta-G solvation = -3186.294142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.79608 -39.67691 -35.92365 -35.13696 -33.40856 -32.81824 -32.29208 -30.12805 -28.21983 -27.23765 -25.86121 -23.60906 -22.92840 -21.72922 -20.73175 -19.88316 -17.58800 -17.06908 -16.67264 -16.30333 -15.80849 -15.52238 -15.37456 -14.81682 -14.53997 -14.40339 -13.95053 -13.71994 -13.51078 -13.12652 -13.06671 -12.78661 -12.46356 -12.33475 -12.03694 -11.78846 -11.55741 -10.91074 -10.73378 -10.57148 -10.31050 -9.94302 -9.81552 -9.76717 -9.40103 -9.23511 -9.19537 -9.01803 -8.38066 -8.23172 -5.95316 -3.97602 0.77465 0.81603 2.69139 3.16414 3.34005 3.40305 3.43007 3.58342 4.12029 4.20420 4.39560 4.48789 4.56483 4.64582 4.82889 5.02250 5.10077 5.15460 5.24348 5.29684 5.39870 5.40511 5.48859 5.50211 5.61930 5.78069 5.79161 6.01001 6.26898 6.37865 6.40720 6.61580 7.05580 7.30860 7.51453 7.65298 7.73860 7.76134 7.93924 8.11032 8.21809 8.46535 9.10307 9.65740 11.15591 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017646 B = 0.003690 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.394972 B = 7585.773873 C = 8492.795337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.096 3.904 4 N -0.479 5.479 5 C 0.091 3.909 6 C -0.148 4.148 7 C -0.064 4.064 8 C 0.158 3.842 9 N -0.726 5.726 10 C 0.484 3.516 11 O -0.552 6.552 12 C 0.079 3.921 13 H 0.098 0.902 14 N -0.806 5.806 15 C -0.095 4.095 16 C 0.031 3.969 17 C -0.523 4.523 18 H 0.052 0.948 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.138 0.862 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.404 0.596 34 H 0.348 0.652 35 H 0.334 0.666 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.035 0.965 39 H 0.013 0.987 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 12.446 17.624 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.122 4.122 3 C -0.061 4.061 4 N -0.187 5.187 5 C -0.066 4.066 6 C -0.169 4.169 7 C -0.073 4.073 8 C 0.035 3.965 9 N -0.380 5.380 10 C 0.270 3.730 11 O -0.429 6.429 12 C -0.036 4.036 13 H 0.116 0.884 14 N -0.334 5.334 15 C -0.134 4.134 16 C -0.006 4.006 17 C -0.561 4.561 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.173 0.827 29 H 0.175 0.825 30 H 0.156 0.844 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.239 0.761 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.031 0.969 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.451 12.679 17.306 21.503 hybrid contribution 0.693 -0.765 0.168 1.046 sum 2.144 11.914 17.475 21.258 Atomic orbital electron populations 1.20826 0.89977 1.03782 1.02893 1.20885 0.97752 0.93507 1.00077 1.22705 0.89917 0.97405 0.96068 1.67677 1.08351 1.31538 1.11126 1.22773 1.00523 0.87493 0.95771 1.22159 0.94365 1.00107 1.00242 1.20231 0.93917 0.94758 0.98371 1.20127 0.98536 0.92303 0.85553 1.46209 1.58412 1.23624 1.09732 1.22845 0.76626 0.79936 0.93565 1.90653 1.56855 1.48169 1.47271 1.21849 0.95079 0.97526 0.89186 0.88398 1.58993 1.06474 1.06857 1.61076 1.21662 0.93221 0.99387 0.99098 1.19018 0.97034 0.97487 0.87053 1.21272 0.98052 1.42722 0.94098 0.93003 1.24987 0.95597 0.95803 0.97900 1.69973 1.23518 1.48649 1.11027 0.86651 0.82916 0.79352 0.79400 1.20702 1.21267 1.20011 0.90666 0.90722 0.90778 0.82657 0.82514 0.84379 0.90466 0.90327 0.76087 0.83778 0.85436 0.92860 0.92812 0.94646 0.96882 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.35 36.01 0.34 -0.49 16 2 C -0.12 -1.05 5.90 -104.48 -0.62 -1.66 16 3 C 0.10 0.88 10.86 -17.55 -0.19 0.69 16 4 N -0.48 -5.09 10.36 -13.25 -0.14 -5.23 16 5 C 0.09 0.84 11.18 -17.55 -0.20 0.64 16 6 C -0.15 -1.33 9.78 -39.44 -0.39 -1.72 16 7 C -0.06 -0.60 5.29 -104.32 -0.55 -1.15 16 8 C 0.16 1.64 4.98 -5.19 -0.03 1.61 16 9 N -0.73 -8.46 4.98 -61.47 -0.31 -8.77 16 10 C 0.48 7.17 7.07 -10.98 -0.08 7.09 16 11 O -0.55 -9.65 16.25 5.56 0.09 -9.56 16 12 C 0.08 1.28 3.15 -68.87 -0.22 1.06 16 13 H 0.10 1.48 8.14 -51.92 -0.42 1.06 16 14 N -0.81 -13.16 8.44 -5.65 -0.05 -13.21 16 15 C -0.10 -1.88 4.78 -26.73 -0.13 -2.01 16 16 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 17 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 18 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.60 6.53 -51.93 -0.34 0.26 16 27 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.16 1.05 8.06 -52.48 -0.42 0.62 16 29 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 32 H 0.08 0.81 7.39 -51.93 -0.38 0.43 16 33 H 0.40 4.29 8.46 -40.82 -0.35 3.94 16 34 H 0.35 5.79 8.58 -39.29 -0.34 5.45 16 35 H 0.33 4.67 9.06 -39.29 -0.36 4.32 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 340.80 15.07 5.14 5.14 Total: -1.00 -33.15 340.80 -8.07 -41.22 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.93 Total: 8.55 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.60 Total: -8.72 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.24 Total: -53.26 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.15 -8.07 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691615207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.886 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds