Wall clock time and date at job start Mon Mar 30 2020 02:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38224 * 120.42070 * 2 1 4 4 N 1.31855 * 120.76539 * 179.72908 * 3 2 1 5 5 C 1.31886 * 121.72176 * 0.58520 * 4 3 2 6 6 C 1.38179 * 120.76799 * 359.68222 * 5 4 3 7 7 C 1.38630 * 120.42049 * 180.28399 * 2 1 3 8 8 C 1.50702 * 120.78722 * 359.95311 * 7 2 1 9 9 N 1.46500 * 109.47243 * 80.00147 * 8 7 2 10 10 C 1.34778 * 119.99879 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00039 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99847 * 180.02562 * 10 9 8 13 13 H 1.09007 * 109.46746 * 320.00012 * 12 10 9 14 14 N 1.46899 * 109.47099 * 200.00275 * 12 10 9 15 15 C 1.52994 * 109.47123 * 79.99745 * 12 10 9 16 16 C 1.53003 * 109.47167 * 184.99973 * 15 12 10 17 17 C 1.50704 * 109.47252 * 180.02562 * 16 15 12 18 18 H 1.07997 * 120.00024 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99984 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99943 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00129 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47046 * 89.99934 * 21 19 17 23 23 H 1.48500 * 109.46994 * 209.99888 * 21 19 17 24 24 H 1.48497 * 109.46819 * 329.99533 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.71769 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.71869 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.71850 * 1 2 3 28 28 H 1.08005 * 119.61789 * 0.03134 * 3 2 1 29 29 H 1.07997 * 119.61697 * 179.70405 * 5 4 3 30 30 H 1.08004 * 120.42114 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47368 * 200.00443 * 8 7 2 32 32 H 1.09000 * 109.47007 * 320.00330 * 8 7 2 33 33 H 0.97004 * 120.00016 * 359.97438 * 9 8 7 34 34 H 1.00903 * 110.99515 * 299.99495 * 14 12 10 35 35 H 1.00895 * 111.00115 * 63.95231 * 14 12 10 36 36 H 1.08999 * 109.47562 * 305.00185 * 15 12 10 37 37 H 1.08998 * 109.47547 * 65.00056 * 15 12 10 38 38 H 1.08999 * 109.47053 * 300.00524 * 16 15 12 39 39 H 1.09006 * 109.46893 * 60.00264 * 16 15 12 40 40 H 0.96997 * 119.99826 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 0.0054 5 6 4.2257 0.0823 -0.0006 6 6 3.5948 -1.1471 -0.0061 7 6 2.2090 -1.1954 -0.0059 8 6 1.4831 -2.5161 -0.0114 9 7 1.0368 -2.8224 -1.3727 10 6 0.3614 -3.9623 -1.6200 11 8 0.1228 -4.7341 -0.7155 12 6 -0.0972 -4.2776 -3.0205 13 1 -0.4608 -3.3673 -3.4974 14 7 -1.1796 -5.2695 -2.9696 15 6 1.0746 -4.8422 -3.8259 16 6 0.6433 -5.0456 -5.2797 17 6 1.7974 -5.6024 -6.0729 18 1 2.7440 -5.7917 -5.5887 19 6 1.6452 -5.8689 -7.4171 20 7 0.4926 -5.6378 -8.0068 21 14 3.0755 -6.5597 -8.4002 22 1 3.0362 -8.0435 -8.3553 23 1 2.9730 -6.1042 -9.8099 24 1 4.3543 -6.0804 -7.8169 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3633 -0.8875 -0.5182 27 1 -0.3633 0.8925 -0.5095 28 1 1.6675 2.1277 0.0005 29 1 5.3046 0.1285 -0.0007 30 1 4.1738 -2.0588 -0.0106 31 1 2.1546 -3.3013 0.3361 32 1 0.6187 -2.4584 0.6500 33 1 1.2274 -2.2049 -2.0961 34 1 -0.8673 -6.1232 -2.5315 35 1 -1.9900 -4.8966 -2.4983 36 1 1.9107 -4.1439 -3.7893 37 1 1.3808 -5.7980 -3.4007 38 1 -0.1928 -5.7440 -5.3163 39 1 0.3372 -4.0898 -5.7050 40 1 0.3854 -5.8257 -8.9524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691615207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:21 Heat of formation + Delta-G solvation = -46.358979 kcal Electronic energy + Delta-G solvation = -20824.339615 eV Core-core repulsion = 17637.003748 eV Total energy + Delta-G solvation = -3187.335867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.57970 -40.79099 -37.04363 -36.49474 -34.80783 -34.17856 -33.04989 -31.92129 -29.14540 -28.18617 -27.29753 -25.15286 -23.68732 -22.59324 -22.24119 -21.21428 -18.83893 -18.14976 -17.80568 -17.71542 -16.86443 -16.83555 -16.41579 -16.05545 -15.88451 -15.39331 -15.08615 -14.88048 -14.38543 -14.27088 -14.02747 -13.82945 -13.65277 -13.53804 -13.41615 -13.08678 -12.80658 -12.52393 -12.43402 -12.24598 -11.79368 -11.66541 -11.27208 -11.04238 -10.71087 -10.48463 -10.46823 -10.22856 -9.88729 -9.60031 -8.13644 -6.23786 0.06855 0.13845 1.42029 1.43124 1.48273 1.53823 2.17911 2.44856 2.83577 3.19621 3.39437 3.56529 3.58123 3.72917 3.84963 3.93056 3.99973 4.11207 4.32026 4.39674 4.49349 4.54051 4.70421 4.73582 4.78305 4.83635 4.94281 5.00400 5.19367 5.24861 5.26982 5.33721 5.57642 5.72683 5.85060 5.99303 6.10072 6.30813 6.39308 6.54268 6.95139 6.97528 7.08131 7.44459 8.97555 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017646 B = 0.003690 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.394972 B = 7585.773873 C = 8492.795337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.119 4.119 3 C 0.087 3.913 4 N -0.503 5.503 5 C 0.081 3.919 6 C -0.151 4.151 7 C -0.073 4.073 8 C 0.163 3.837 9 N -0.711 5.711 10 C 0.493 3.507 11 O -0.578 6.578 12 C 0.086 3.914 13 H 0.110 0.890 14 N -0.819 5.819 15 C -0.082 4.082 16 C 0.039 3.961 17 C -0.544 4.544 18 H 0.055 0.945 19 C 0.002 3.998 20 N -0.930 5.930 21 Si 0.958 3.042 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.264 1.264 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.176 0.824 29 H 0.176 0.824 30 H 0.151 0.849 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.412 0.588 34 H 0.346 0.654 35 H 0.347 0.653 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.006 0.994 39 H -0.006 1.006 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.218 13.188 18.198 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.121 4.121 3 C -0.070 4.070 4 N -0.211 5.211 5 C -0.075 4.075 6 C -0.171 4.171 7 C -0.081 4.081 8 C 0.040 3.960 9 N -0.363 5.363 10 C 0.279 3.721 11 O -0.458 6.458 12 C -0.029 4.029 13 H 0.128 0.872 14 N -0.348 5.348 15 C -0.120 4.120 16 C 0.002 3.998 17 C -0.582 4.582 18 H 0.074 0.926 19 C -0.195 4.195 20 N -0.570 5.570 21 Si 0.783 3.217 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.188 1.188 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.193 0.807 29 H 0.193 0.807 30 H 0.168 0.832 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.248 0.752 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.025 0.975 39 H 0.012 0.988 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.416 13.456 17.895 22.520 hybrid contribution 0.380 -0.947 0.012 1.021 sum 2.796 12.509 17.907 22.022 Atomic orbital electron populations 1.20848 0.88778 1.04030 1.03582 1.21057 0.98609 0.93159 0.99303 1.23074 0.89715 0.98415 0.95750 1.67699 1.09206 1.32341 1.11873 1.23124 1.01547 0.87280 0.95555 1.22336 0.94386 1.00633 0.99794 1.20199 0.94170 0.94420 0.99334 1.20130 0.98638 0.92784 0.84425 1.46066 1.56900 1.22570 1.10781 1.22344 0.76860 0.80492 0.92448 1.90650 1.58100 1.49299 1.47724 1.21629 0.93799 0.97645 0.89865 0.87191 1.58964 1.07178 1.07028 1.61627 1.21387 0.95004 0.99552 0.96095 1.18832 0.95372 0.95385 0.90250 1.21740 0.98937 1.42679 0.94845 0.92635 1.25885 0.98336 0.96117 0.99202 1.70102 1.25678 1.49765 1.11442 0.85556 0.79741 0.78622 0.77765 1.20160 1.20784 1.18808 0.89703 0.91647 0.89329 0.80703 0.80663 0.83160 0.90825 0.90041 0.75237 0.84082 0.83917 0.91586 0.93811 0.97543 0.98786 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.35 71.24 0.67 -0.72 16 2 C -0.12 -1.86 5.90 -19.77 -0.12 -1.98 16 3 C 0.09 1.45 10.86 84.69 0.92 2.37 16 4 N -0.50 -10.00 10.36 -195.84 -2.03 -12.03 16 5 C 0.08 1.38 11.18 84.67 0.95 2.32 16 6 C -0.15 -2.47 9.78 22.36 0.22 -2.26 16 7 C -0.07 -1.24 5.29 -19.67 -0.10 -1.35 16 8 C 0.16 3.12 4.98 85.63 0.43 3.54 16 9 N -0.71 -15.40 4.98 -466.78 -2.33 -17.72 16 10 C 0.49 13.98 7.07 87.66 0.62 14.60 16 11 O -0.58 -19.61 16.25 -3.02 -0.05 -19.66 16 12 C 0.09 2.72 3.15 44.17 0.14 2.86 16 13 H 0.11 3.19 8.14 -2.38 -0.02 3.18 16 14 N -0.82 -26.57 8.44 -171.80 -1.45 -28.02 16 15 C -0.08 -3.21 4.78 30.59 0.15 -3.06 16 16 C 0.04 1.99 4.86 29.85 0.15 2.13 16 17 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 18 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 19 C 0.00 0.14 5.46 84.65 0.46 0.60 16 20 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 21 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 25 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.92 6.53 -2.39 -0.02 0.90 16 27 H 0.09 0.81 8.09 -2.38 -0.02 0.79 16 28 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 29 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 30 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.07 1.50 8.04 -2.39 -0.02 1.48 16 32 H 0.08 1.55 7.39 -2.39 -0.02 1.53 16 33 H 0.41 7.94 8.46 -92.71 -0.78 7.16 16 34 H 0.35 11.51 8.58 -89.69 -0.77 10.74 16 35 H 0.35 9.51 9.06 -89.70 -0.81 8.70 16 36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16 39 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 40 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -70.50 340.80 -0.14 -70.64 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -1.30 Total: 28.03 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 4.70 Total: -11.34 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -5.52 Total: -113.89 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.05 Total: -19.66 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -70.50 -0.14 -70.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691615207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.284 kcal (2) G-P(sol) polarization free energy of solvation -70.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds