Wall clock time and date at job start Mon Mar 30 2020 02:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38224 * 120.42070 * 2 1 4 4 N 1.31855 * 120.76539 * 179.72908 * 3 2 1 5 5 C 1.31886 * 121.72176 * 0.58520 * 4 3 2 6 6 C 1.38179 * 120.76799 * 359.68222 * 5 4 3 7 7 C 1.38630 * 120.42049 * 180.28399 * 2 1 3 8 8 C 1.50702 * 120.78722 * 359.95311 * 7 2 1 9 9 N 1.46500 * 109.47243 * 80.00147 * 8 7 2 10 10 C 1.34778 * 119.99879 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00039 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99847 * 180.02562 * 10 9 8 13 13 H 1.09002 * 109.46868 * 39.99756 * 12 10 9 14 14 N 1.46892 * 109.47039 * 159.99964 * 12 10 9 15 15 C 1.53001 * 109.46752 * 280.00000 * 12 10 9 16 16 C 1.53001 * 109.46764 * 174.99998 * 15 12 10 17 17 C 1.50701 * 109.47052 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00211 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00231 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00145 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99685 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47465 * 90.00212 * 21 19 17 23 23 H 1.48503 * 109.46828 * 210.00001 * 21 19 17 24 24 H 1.48506 * 109.47001 * 329.99664 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.71769 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.71869 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.71850 * 1 2 3 28 28 H 1.08005 * 119.61789 * 0.03134 * 3 2 1 29 29 H 1.07997 * 119.61697 * 179.70405 * 5 4 3 30 30 H 1.08004 * 120.42114 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47368 * 200.00443 * 8 7 2 32 32 H 1.09000 * 109.47007 * 320.00330 * 8 7 2 33 33 H 0.97004 * 120.00016 * 359.97438 * 9 8 7 34 34 H 1.00898 * 111.00262 * 60.00007 * 14 12 10 35 35 H 1.00907 * 110.99853 * 183.95079 * 14 12 10 36 36 H 1.08995 * 109.47397 * 294.99650 * 15 12 10 37 37 H 1.09003 * 109.47469 * 55.00523 * 15 12 10 38 38 H 1.09000 * 109.47469 * 299.99588 * 16 15 12 39 39 H 1.09001 * 109.47424 * 60.00186 * 16 15 12 40 40 H 0.97005 * 120.00088 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 0.0054 5 6 4.2257 0.0823 -0.0006 6 6 3.5948 -1.1471 -0.0061 7 6 2.2090 -1.1954 -0.0059 8 6 1.4831 -2.5161 -0.0114 9 7 1.0368 -2.8224 -1.3727 10 6 0.3614 -3.9623 -1.6200 11 8 0.1228 -4.7341 -0.7155 12 6 -0.0972 -4.2776 -3.0205 13 1 0.6796 -3.9926 -3.7300 14 7 -0.3618 -5.7179 -3.1364 15 6 -1.3777 -3.4977 -3.3255 16 6 -1.7744 -3.7200 -4.7863 17 6 -3.0353 -2.9513 -5.0870 18 1 -3.5067 -2.3634 -4.3135 19 6 -3.5876 -2.9994 -6.3495 20 7 -4.6882 -2.3290 -6.6117 21 14 -2.7726 -4.0169 -7.6873 22 1 -3.3225 -5.3962 -7.6645 23 1 -3.0400 -3.3993 -9.0110 24 1 -1.3074 -4.0641 -7.4499 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3633 -0.8875 -0.5182 27 1 -0.3633 0.8925 -0.5095 28 1 1.6675 2.1277 0.0005 29 1 5.3046 0.1285 -0.0007 30 1 4.1738 -2.0588 -0.0106 31 1 2.1546 -3.3013 0.3361 32 1 0.6187 -2.4584 0.6500 33 1 1.2274 -2.2049 -2.0961 34 1 -1.0789 -6.0072 -2.4883 35 1 -0.6088 -5.9651 -4.0830 36 1 -2.1792 -3.8461 -2.6743 37 1 -1.2057 -2.4351 -3.1535 38 1 -0.9729 -3.3715 -5.4377 39 1 -1.9465 -4.7825 -4.9585 40 1 -5.0766 -2.3626 -7.5000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691615209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:24 Heat of formation + Delta-G solvation = -19.443616 kcal Electronic energy + Delta-G solvation = -20955.004904 eV Core-core repulsion = 17768.836175 eV Total energy + Delta-G solvation = -3186.168729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.76331 -39.60154 -36.04427 -35.37753 -33.34537 -32.83829 -32.27064 -30.36028 -28.28953 -27.31886 -26.10861 -23.69582 -22.90632 -21.68605 -20.63683 -19.97667 -17.70892 -17.04738 -16.85194 -16.63996 -15.88931 -15.37507 -14.93398 -14.73527 -14.55533 -14.27486 -14.06466 -13.73114 -13.50534 -13.14602 -12.97034 -12.79967 -12.73262 -12.68605 -12.32215 -11.95441 -11.71588 -11.38853 -11.02239 -10.44549 -10.16967 -10.04366 -9.90141 -9.73980 -9.43706 -9.35066 -9.18567 -9.15721 -8.65089 -8.37205 -6.14686 -4.14421 0.80864 0.83114 2.78391 3.13178 3.22804 3.31325 3.32185 3.58779 4.14987 4.23238 4.34972 4.43077 4.62071 4.69881 4.88558 4.99341 5.13400 5.18305 5.19367 5.33045 5.39659 5.40653 5.44548 5.54611 5.56017 5.69599 5.89649 6.05310 6.08432 6.27135 6.31022 6.41197 6.61056 7.04380 7.17789 7.26300 7.52437 7.63273 7.67623 7.73272 8.30214 8.41163 8.88995 9.46564 10.98476 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.003855 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.064905 B = 7261.405270 C = 7984.672514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C 0.097 3.903 4 N -0.479 5.479 5 C 0.088 3.912 6 C -0.150 4.150 7 C -0.066 4.066 8 C 0.162 3.838 9 N -0.730 5.730 10 C 0.527 3.473 11 O -0.534 6.534 12 C 0.072 3.928 13 H 0.097 0.903 14 N -0.831 5.831 15 C -0.129 4.129 16 C -0.011 4.011 17 C -0.525 4.525 18 H 0.071 0.929 19 C 0.068 3.932 20 N -0.900 5.900 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.157 0.843 29 H 0.156 0.844 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.403 0.597 34 H 0.348 0.652 35 H 0.351 0.649 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.018 0.982 39 H 0.012 0.988 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.592 3.276 12.514 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.117 4.117 3 C -0.061 4.061 4 N -0.187 5.187 5 C -0.069 4.069 6 C -0.171 4.171 7 C -0.074 4.074 8 C 0.038 3.962 9 N -0.384 5.384 10 C 0.314 3.686 11 O -0.410 6.410 12 C -0.043 4.043 13 H 0.115 0.885 14 N -0.363 5.363 15 C -0.169 4.169 16 C -0.048 4.048 17 C -0.562 4.562 18 H 0.089 0.911 19 C -0.134 4.134 20 N -0.539 5.539 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.190 1.190 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.174 0.826 29 H 0.173 0.827 30 H 0.155 0.845 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.237 0.763 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.036 0.964 39 H 0.030 0.970 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.493 3.430 13.267 21.443 hybrid contribution -0.970 -0.584 -1.428 1.822 sum 15.523 2.846 11.840 19.729 Atomic orbital electron populations 1.20867 0.89669 1.04244 1.03032 1.20938 0.97944 0.93441 0.99373 1.22737 0.89838 0.97548 0.95929 1.67676 1.08403 1.31509 1.11110 1.22745 1.00425 0.87556 0.96160 1.22120 0.94328 0.99969 1.00634 1.20232 0.93854 0.94799 0.98509 1.20100 0.98621 0.92199 0.85236 1.46009 1.58955 1.23495 1.09935 1.20831 0.76371 0.79976 0.91397 1.90652 1.55577 1.47969 1.46772 1.21509 0.99404 0.90740 0.92639 0.88526 1.58729 1.52891 1.12768 1.11881 1.22202 0.94572 0.99625 1.00483 1.19574 0.97500 0.96623 0.91098 1.21055 1.07897 1.29662 0.97628 0.91068 1.25040 0.94627 0.95194 0.98538 1.69907 1.20100 1.42003 1.21854 0.86775 0.80478 0.80630 0.81365 1.20194 1.21304 1.18991 0.90548 0.90422 0.90575 0.82557 0.82656 0.84521 0.90422 0.90133 0.76255 0.83815 0.83424 0.92009 0.91910 0.96362 0.97032 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.35 36.01 0.34 -0.71 16 2 C -0.11 -1.07 5.90 -104.48 -0.62 -1.69 16 3 C 0.10 0.93 10.86 -17.55 -0.19 0.74 16 4 N -0.48 -5.11 10.36 -13.25 -0.14 -5.25 16 5 C 0.09 0.78 11.18 -17.55 -0.20 0.58 16 6 C -0.15 -1.27 9.78 -39.44 -0.39 -1.65 16 7 C -0.07 -0.61 5.29 -104.32 -0.55 -1.16 16 8 C 0.16 1.67 4.98 -5.19 -0.03 1.65 16 9 N -0.73 -8.48 4.98 -61.47 -0.31 -8.78 16 10 C 0.53 7.91 7.08 -10.98 -0.08 7.83 16 11 O -0.53 -9.65 16.25 5.56 0.09 -9.56 16 12 C 0.07 1.11 3.21 -68.87 -0.22 0.89 16 13 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 14 N -0.83 -12.93 8.94 -5.66 -0.05 -12.99 16 15 C -0.13 -2.32 4.78 -26.73 -0.13 -2.45 16 16 C -0.01 -0.23 3.81 -27.88 -0.11 -0.34 16 17 C -0.52 -14.28 9.66 -34.44 -0.33 -14.61 16 18 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 21 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.78 6.53 -51.93 -0.34 0.44 16 27 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 29 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 31 H 0.08 0.80 8.04 -51.93 -0.42 0.39 16 32 H 0.08 0.88 7.39 -51.93 -0.38 0.49 16 33 H 0.40 4.16 8.46 -40.82 -0.35 3.82 16 34 H 0.35 5.54 8.58 -39.29 -0.34 5.20 16 35 H 0.35 5.29 7.55 -39.29 -0.30 4.99 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 39 H 0.01 0.25 6.30 -51.93 -0.33 -0.08 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 335.24 15.07 5.05 5.05 Total: -1.00 -32.60 335.24 -7.63 -40.23 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.79 Total: 10.53 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.59 Total: -9.12 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.28 Total: -53.30 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.60 -7.63 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691615209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.785 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds