Wall clock time and date at job start Mon Mar 30 2020 02:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38224 * 120.42070 * 2 1 4 4 N 1.31855 * 120.76539 * 179.72908 * 3 2 1 5 5 C 1.31886 * 121.72176 * 0.58520 * 4 3 2 6 6 C 1.38179 * 120.76799 * 359.68222 * 5 4 3 7 7 C 1.38630 * 120.42049 * 180.28399 * 2 1 3 8 8 C 1.50702 * 120.78722 * 359.95311 * 7 2 1 9 9 N 1.46500 * 109.47243 * 80.00147 * 8 7 2 10 10 C 1.34778 * 119.99879 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00039 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99847 * 180.02562 * 10 9 8 13 13 H 1.09002 * 109.46868 * 39.99756 * 12 10 9 14 14 N 1.46892 * 109.47039 * 159.99964 * 12 10 9 15 15 C 1.53001 * 109.46752 * 280.00000 * 12 10 9 16 16 C 1.53001 * 109.46764 * 174.99998 * 15 12 10 17 17 C 1.50701 * 109.47052 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00211 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00231 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00145 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99685 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47465 * 90.00212 * 21 19 17 23 23 H 1.48503 * 109.46828 * 210.00001 * 21 19 17 24 24 H 1.48506 * 109.47001 * 329.99664 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.71769 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.71869 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.71850 * 1 2 3 28 28 H 1.08005 * 119.61789 * 0.03134 * 3 2 1 29 29 H 1.07997 * 119.61697 * 179.70405 * 5 4 3 30 30 H 1.08004 * 120.42114 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47368 * 200.00443 * 8 7 2 32 32 H 1.09000 * 109.47007 * 320.00330 * 8 7 2 33 33 H 0.97004 * 120.00016 * 359.97438 * 9 8 7 34 34 H 1.00898 * 111.00262 * 60.00007 * 14 12 10 35 35 H 1.00907 * 110.99853 * 183.95079 * 14 12 10 36 36 H 1.08995 * 109.47397 * 294.99650 * 15 12 10 37 37 H 1.09003 * 109.47469 * 55.00523 * 15 12 10 38 38 H 1.09000 * 109.47469 * 299.99588 * 16 15 12 39 39 H 1.09001 * 109.47424 * 60.00186 * 16 15 12 40 40 H 0.97005 * 120.00088 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 0.0054 5 6 4.2257 0.0823 -0.0006 6 6 3.5948 -1.1471 -0.0061 7 6 2.2090 -1.1954 -0.0059 8 6 1.4831 -2.5161 -0.0114 9 7 1.0368 -2.8224 -1.3727 10 6 0.3614 -3.9623 -1.6200 11 8 0.1228 -4.7341 -0.7155 12 6 -0.0972 -4.2776 -3.0205 13 1 0.6796 -3.9926 -3.7300 14 7 -0.3618 -5.7179 -3.1364 15 6 -1.3777 -3.4977 -3.3255 16 6 -1.7744 -3.7200 -4.7863 17 6 -3.0353 -2.9513 -5.0870 18 1 -3.5067 -2.3634 -4.3135 19 6 -3.5876 -2.9994 -6.3495 20 7 -4.6882 -2.3290 -6.6117 21 14 -2.7726 -4.0169 -7.6873 22 1 -3.3225 -5.3962 -7.6645 23 1 -3.0400 -3.3993 -9.0110 24 1 -1.3074 -4.0641 -7.4499 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3633 -0.8875 -0.5182 27 1 -0.3633 0.8925 -0.5095 28 1 1.6675 2.1277 0.0005 29 1 5.3046 0.1285 -0.0007 30 1 4.1738 -2.0588 -0.0106 31 1 2.1546 -3.3013 0.3361 32 1 0.6187 -2.4584 0.6500 33 1 1.2274 -2.2049 -2.0961 34 1 -1.0789 -6.0072 -2.4883 35 1 -0.6088 -5.9651 -4.0830 36 1 -2.1792 -3.8461 -2.6743 37 1 -1.2057 -2.4351 -3.1535 38 1 -0.9729 -3.3715 -5.4377 39 1 -1.9465 -4.7825 -4.9585 40 1 -5.0766 -2.3626 -7.5000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691615209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:23 Heat of formation + Delta-G solvation = -43.771738 kcal Electronic energy + Delta-G solvation = -20956.059851 eV Core-core repulsion = 17768.836175 eV Total energy + Delta-G solvation = -3187.223675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.54606 -40.71042 -37.29105 -36.51048 -34.80597 -34.15976 -33.03655 -32.07431 -29.28443 -28.26953 -27.36142 -25.15889 -23.66451 -22.50583 -22.16191 -21.22200 -19.18426 -18.45201 -17.81221 -17.64662 -16.87358 -16.25873 -16.10207 -16.05894 -15.85877 -15.56862 -15.15997 -14.91167 -14.58648 -14.44552 -14.27734 -13.87393 -13.66267 -13.63305 -13.48543 -13.09962 -13.04704 -12.66909 -12.41379 -12.08480 -11.91527 -11.66423 -11.40256 -11.05088 -10.76980 -10.53316 -10.44973 -10.18689 -9.87315 -9.65163 -8.29577 -6.34868 0.08423 0.15224 1.38620 1.39946 1.51056 1.58811 2.15201 2.36306 2.84466 3.06308 3.41576 3.57648 3.72082 3.75914 3.78500 3.93836 4.01028 4.10041 4.19307 4.42095 4.51360 4.53838 4.60280 4.71104 4.72065 4.74741 4.85619 4.95556 5.00346 5.19813 5.29610 5.36103 5.36943 5.47552 5.63084 5.73934 6.06131 6.25490 6.45933 6.49859 6.73819 6.98975 7.17968 7.30054 8.87108 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.003855 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.064905 B = 7261.405270 C = 7984.672514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.119 4.119 3 C 0.086 3.914 4 N -0.502 5.502 5 C 0.082 3.918 6 C -0.146 4.146 7 C -0.071 4.071 8 C 0.166 3.834 9 N -0.714 5.714 10 C 0.529 3.471 11 O -0.568 6.568 12 C 0.081 3.919 13 H 0.118 0.882 14 N -0.830 5.830 15 C -0.118 4.118 16 C -0.007 4.007 17 C -0.534 4.534 18 H 0.028 0.972 19 C 0.003 3.997 20 N -0.953 5.953 21 Si 0.952 3.048 22 H -0.268 1.268 23 H -0.289 1.289 24 H -0.237 1.237 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.171 0.829 29 H 0.180 0.820 30 H 0.158 0.842 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.411 0.589 34 H 0.345 0.655 35 H 0.355 0.645 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.030 0.970 39 H 0.023 0.977 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.116 2.502 12.094 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.121 4.121 3 C -0.070 4.070 4 N -0.211 5.211 5 C -0.075 4.075 6 C -0.166 4.166 7 C -0.080 4.080 8 C 0.043 3.957 9 N -0.367 5.367 10 C 0.315 3.685 11 O -0.446 6.446 12 C -0.035 4.035 13 H 0.136 0.864 14 N -0.362 5.362 15 C -0.158 4.158 16 C -0.044 4.044 17 C -0.572 4.572 18 H 0.046 0.954 19 C -0.194 4.194 20 N -0.593 5.593 21 Si 0.775 3.225 22 H -0.193 1.193 23 H -0.215 1.215 24 H -0.160 1.160 25 H 0.102 0.898 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.188 0.812 29 H 0.197 0.803 30 H 0.176 0.824 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.247 0.753 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.041 0.959 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.050 2.681 12.860 23.140 hybrid contribution -1.782 -0.255 -1.207 2.167 sum 17.268 2.426 11.653 20.973 Atomic orbital electron populations 1.20843 0.89506 1.03790 1.03414 1.20998 0.98102 0.93561 0.99480 1.22989 0.89845 0.98235 0.95976 1.67702 1.08912 1.32599 1.11881 1.23193 1.01621 0.87227 0.95414 1.22344 0.93955 1.00768 0.99503 1.20189 0.94367 0.94114 0.99300 1.20105 0.98534 0.92939 0.84164 1.45890 1.57533 1.22390 1.10918 1.20724 0.76513 0.80455 0.90782 1.90644 1.57152 1.49314 1.47483 1.21437 0.98295 0.90169 0.93557 0.86416 1.58752 1.52759 1.12660 1.12060 1.22016 0.95640 1.00317 0.97798 1.19506 0.95079 0.96261 0.93569 1.21443 1.09718 1.29352 0.96652 0.95392 1.26061 0.95208 0.96605 1.01508 1.70077 1.22247 1.44331 1.22663 0.85634 0.80827 0.78674 0.77355 1.19303 1.21505 1.16033 0.89801 0.91925 0.89901 0.81236 0.80270 0.82424 0.89976 0.90813 0.75266 0.84131 0.83006 0.93805 0.91662 0.95127 0.95856 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.35 71.24 0.67 -1.31 16 2 C -0.12 -2.09 5.90 -19.77 -0.12 -2.21 16 3 C 0.09 1.56 10.86 84.69 0.92 2.48 16 4 N -0.50 -9.99 10.36 -195.84 -2.03 -12.02 16 5 C 0.08 1.27 11.18 84.67 0.95 2.22 16 6 C -0.15 -2.11 9.78 22.36 0.22 -1.89 16 7 C -0.07 -1.21 5.29 -19.67 -0.10 -1.32 16 8 C 0.17 3.18 4.98 85.63 0.43 3.61 16 9 N -0.71 -15.37 4.98 -466.78 -2.33 -17.69 16 10 C 0.53 15.04 7.08 87.66 0.62 15.66 16 11 O -0.57 -19.95 16.25 -3.02 -0.05 -20.00 16 12 C 0.08 2.30 3.21 44.17 0.14 2.44 16 13 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 14 N -0.83 -24.15 8.94 -171.81 -1.54 -25.69 16 15 C -0.12 -4.12 4.78 30.59 0.15 -3.98 16 16 C -0.01 -0.28 3.81 29.85 0.11 -0.17 16 17 C -0.53 -29.37 9.66 25.60 0.25 -29.13 16 18 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 19 C 0.00 0.17 5.47 84.66 0.46 0.63 16 20 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 21 Si 0.95 42.03 27.47 68.60 1.88 43.91 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 24 H -0.24 -9.34 6.54 99.48 0.65 -8.69 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.23 6.53 -2.39 -0.02 1.22 16 27 H 0.08 1.24 8.09 -2.38 -0.02 1.23 16 28 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 31 H 0.08 1.55 8.04 -2.39 -0.02 1.53 16 32 H 0.07 1.55 7.39 -2.39 -0.02 1.53 16 33 H 0.41 7.62 8.46 -92.71 -0.78 6.84 16 34 H 0.35 10.56 8.58 -89.70 -0.77 9.79 16 35 H 0.35 9.74 7.55 -89.69 -0.68 9.06 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.03 1.23 7.20 -2.39 -0.02 1.21 16 39 H 0.02 0.93 6.30 -2.39 -0.02 0.92 16 40 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -70.83 335.24 -0.28 -71.11 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -1.21 Total: 31.68 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 4.69 Total: -12.96 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -5.59 Total: -113.73 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.05 Total: -20.00 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.88 Total: 43.91 kcal Total: -70.83 -0.28 -71.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691615209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.337 kcal (2) G-P(sol) polarization free energy of solvation -70.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds