Wall clock time and date at job start Mon Mar 30 2020 01:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31924 * 120.17307 * 2 1 4 4 N 1.28273 * 122.32497 * 180.02562 * 3 2 1 5 5 C 1.31918 * 122.52092 * 359.97438 * 4 3 2 6 6 C 1.38507 * 119.96671 * 0.02562 * 5 4 3 7 7 C 1.39732 * 120.17118 * 179.72008 * 2 1 3 8 8 C 1.48135 * 121.14688 * 0.02562 * 7 2 1 9 9 O 1.21520 * 119.99827 * 53.62244 * 8 7 2 10 10 N 1.34777 * 120.00230 * 233.62948 * 8 7 2 11 11 C 1.46505 * 119.99687 * 5.60412 * 10 8 7 12 12 C 1.50699 * 109.47025 * 90.00368 * 11 10 8 13 13 H 1.08004 * 119.99922 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99689 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99526 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00279 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47125 * 90.00112 * 16 14 12 18 18 H 1.48497 * 109.47096 * 210.00226 * 16 14 12 19 19 H 1.48503 * 109.47090 * 330.00091 * 16 14 12 20 20 C 1.46498 * 120.00020 * 185.60633 * 10 8 7 21 21 C 1.52995 * 109.47166 * 94.45144 * 20 10 8 22 22 C 1.53002 * 109.47063 * 175.25856 * 21 20 10 23 23 C 1.52994 * 109.47014 * 295.25987 * 21 20 10 24 24 H 1.08995 * 109.47101 * 85.75124 * 1 2 3 25 25 H 1.09003 * 109.47058 * 325.74730 * 1 2 3 26 26 H 1.09007 * 109.47230 * 205.75099 * 1 2 3 27 27 H 1.08001 * 120.01716 * 179.97438 * 5 4 3 28 28 H 1.07998 * 121.08628 * 179.97438 * 6 5 4 29 29 H 1.08997 * 109.46435 * 210.00193 * 11 10 8 30 30 H 1.09002 * 109.47280 * 329.99983 * 11 10 8 31 31 H 0.97006 * 120.00182 * 179.97438 * 15 14 12 32 32 H 1.09003 * 109.46776 * 214.45156 * 20 10 8 33 33 H 1.09001 * 109.46813 * 334.44593 * 20 10 8 34 34 H 1.09000 * 109.47318 * 55.26191 * 21 20 10 35 35 H 1.09000 * 109.46780 * 60.00005 * 22 21 20 36 36 H 1.08995 * 109.46884 * 179.97438 * 22 21 20 37 37 H 1.08997 * 109.47335 * 299.99868 * 22 21 20 38 38 H 1.08997 * 109.47452 * 305.93501 * 23 21 20 39 39 H 1.09001 * 109.47485 * 65.94093 * 23 21 20 40 40 H 1.09001 * 109.47226 * 185.93988 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4519 1.1887 -0.0005 5 6 4.2024 0.1037 -0.0005 6 6 3.6091 -1.1478 -0.0006 7 6 2.2093 -1.2080 0.0059 8 6 1.4983 -2.5076 0.0117 9 8 0.6594 -2.7450 -0.8349 10 7 1.7817 -3.4266 0.9559 11 6 2.7013 -3.0958 2.0474 12 6 1.9236 -2.5181 3.2017 13 1 0.8517 -2.4079 3.1294 14 6 2.5808 -2.1292 4.3497 15 7 1.9022 -1.6245 5.3568 16 14 4.4349 -2.3191 4.4745 17 1 5.0936 -1.0848 3.9766 18 1 4.8150 -2.5458 5.8920 19 1 4.8701 -3.4779 3.6540 20 6 1.1702 -4.7563 0.8908 21 6 2.1178 -5.7187 0.1720 22 6 1.5328 -7.1320 0.2077 23 6 2.2896 -5.2744 -1.2819 24 1 -0.3633 0.0761 -1.0248 25 1 -0.3633 0.8495 0.5784 26 1 -0.3634 -0.9257 0.4465 27 1 5.2788 0.1914 -0.0014 28 1 4.2060 -2.0479 -0.0010 29 1 3.2181 -3.9985 2.3730 30 1 3.4310 -2.3650 1.6988 31 1 2.3644 -1.3513 6.1647 32 1 0.9814 -5.1192 1.9011 33 1 0.2290 -4.6970 0.3442 34 1 3.0872 -5.7141 0.6703 35 1 0.5634 -7.1367 -0.2907 36 1 2.2077 -7.8176 -0.3048 37 1 1.4104 -7.4486 1.2435 38 1 1.3102 -5.1774 -1.7504 39 1 2.8026 -4.3131 -1.3099 40 1 2.8784 -6.0162 -1.8214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701771274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:56 Heat of formation + Delta-G solvation = 13.720527 kcal Electronic energy + Delta-G solvation = -22552.404513 eV Core-core repulsion = 19367.673889 eV Total energy + Delta-G solvation = -3184.730624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99818 -39.26980 -36.28327 -34.51487 -33.45944 -32.83249 -32.36986 -28.32663 -28.13918 -27.01160 -26.47063 -24.54701 -22.81612 -22.62452 -20.42396 -19.08734 -17.59015 -17.13615 -16.82692 -16.15707 -15.56806 -14.97952 -14.71709 -14.66550 -14.34807 -14.08486 -13.40146 -13.28870 -12.91615 -12.77456 -12.60484 -12.45002 -12.13334 -12.02025 -11.95788 -11.67961 -11.23642 -11.09798 -10.84269 -10.77990 -10.68071 -10.45178 -10.35941 -10.02588 -9.82487 -9.65170 -9.40418 -9.16957 -8.80593 -7.96399 -6.31423 -4.33685 0.81714 1.16098 2.96605 3.08321 3.13143 3.17727 3.45266 3.87178 4.16345 4.28399 4.66325 4.68588 4.79881 4.99125 5.02769 5.09812 5.13103 5.25353 5.45361 5.69996 5.73797 5.75064 5.80756 5.84204 5.90193 5.97348 6.07994 6.13187 6.16084 6.19641 6.27728 6.31781 6.42559 6.44346 6.49566 6.55675 7.09014 7.30628 7.83982 8.24421 8.52587 8.73847 8.95666 9.26479 10.81074 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.009712 C = 0.006471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.845515 B = 2882.316851 C = 4326.099784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.118 3.882 3 N -0.247 5.247 4 N -0.235 5.235 5 C 0.027 3.973 6 C -0.085 4.085 7 C -0.097 4.097 8 C 0.568 3.432 9 O -0.545 6.545 10 N -0.576 5.576 11 C 0.200 3.800 12 C -0.543 4.543 13 H 0.079 0.921 14 C 0.079 3.921 15 N -0.885 5.885 16 Si 0.865 3.135 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.263 1.263 20 C 0.121 3.879 21 C -0.114 4.114 22 C -0.142 4.142 23 C -0.138 4.138 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.173 0.827 28 H 0.151 0.849 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.268 0.732 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.288 -5.537 -10.125 11.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.026 4.026 3 N -0.090 5.090 4 N -0.076 5.076 5 C -0.137 4.137 6 C -0.114 4.114 7 C -0.111 4.111 8 C 0.354 3.646 9 O -0.425 6.425 10 N -0.305 5.305 11 C 0.079 3.921 12 C -0.581 4.581 13 H 0.097 0.903 14 C -0.125 4.125 15 N -0.521 5.521 16 Si 0.691 3.309 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.001 4.001 21 C -0.133 4.133 22 C -0.200 4.200 23 C -0.196 4.196 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.190 0.810 28 H 0.169 0.831 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.807 -3.943 -10.333 11.410 hybrid contribution 1.348 -1.616 0.589 2.185 sum 4.155 -5.558 -9.744 11.963 Atomic orbital electron populations 1.20684 0.87058 1.04340 1.03445 1.22866 0.99141 0.88715 0.91868 1.72917 1.01512 1.24106 1.10476 1.72767 0.99686 1.27715 1.07465 1.24116 1.02340 0.89440 0.97829 1.22482 0.94061 1.00118 0.94786 1.20988 0.94670 0.95857 0.99625 1.17800 0.82166 0.82838 0.81808 1.90726 1.33228 1.79241 1.39258 1.47818 1.45762 1.11896 1.25024 1.20060 0.89577 0.96863 0.85610 1.21300 0.96380 1.42606 0.97862 0.90314 1.24857 0.98107 0.94185 0.95398 1.69873 1.36080 1.40914 1.05276 0.87006 0.86171 0.79316 0.78374 1.19695 1.20551 1.18745 1.21516 0.96152 0.81087 1.01385 1.21525 0.99962 0.95071 0.96755 1.21743 1.00870 0.95520 1.01825 1.21772 1.01965 1.00243 0.95591 0.89658 0.89915 0.89936 0.81021 0.83147 0.94376 0.95113 0.92204 0.89896 0.90005 0.91121 0.92590 0.92798 0.92455 0.92120 0.93445 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 9.52 36.00 0.34 -1.29 16 2 C 0.12 2.25 6.91 -82.00 -0.57 1.69 16 3 N -0.25 -4.83 11.42 33.81 0.39 -4.45 16 4 N -0.23 -4.35 11.48 30.53 0.35 -4.00 16 5 C 0.03 0.42 11.30 -17.42 -0.20 0.22 16 6 C -0.09 -1.38 7.77 -38.78 -0.30 -1.68 16 7 C -0.10 -1.82 4.99 -104.57 -0.52 -2.34 16 8 C 0.57 10.88 4.79 -12.20 -0.06 10.82 16 9 O -0.55 -10.90 14.79 5.35 0.08 -10.82 16 10 N -0.58 -10.89 2.28 -176.07 -0.40 -11.29 16 11 C 0.20 4.19 4.08 -5.19 -0.02 4.16 16 12 C -0.54 -14.02 9.94 -34.44 -0.34 -14.36 16 13 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 14 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 15 N -0.88 -25.58 13.96 55.43 0.77 -24.81 16 16 Si 0.87 19.45 27.47 -169.99 -4.67 14.78 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 20 C 0.12 1.99 4.98 -4.05 -0.02 1.97 16 21 C -0.11 -1.54 3.13 -90.62 -0.28 -1.82 16 22 C -0.14 -1.58 9.19 37.16 0.34 -1.23 16 23 C -0.14 -1.87 8.10 37.15 0.30 -1.57 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.08 1.49 6.69 -51.92 -0.35 1.14 16 27 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 28 H 0.15 2.04 7.46 -52.49 -0.39 1.65 16 29 H 0.04 0.78 7.13 -51.93 -0.37 0.41 16 30 H 0.03 0.63 3.82 -51.93 -0.20 0.43 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 33 H 0.08 1.36 7.23 -51.93 -0.38 0.99 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.87 8.03 -51.93 -0.42 0.45 16 39 H 0.05 0.70 6.98 -51.93 -0.36 0.34 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 329.18 15.07 4.96 4.96 Total: -1.00 -30.35 329.18 -5.80 -36.15 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.85 Total: 2.90 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.42 Total: -3.42 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 1.11 Total: -44.54 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.67 Total: 14.78 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.35 -5.80 -36.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701771274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.868 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds