Wall clock time and date at job start Mon Mar 30 2020 01:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31924 * 120.17307 * 2 1 4 4 N 1.28273 * 122.32497 * 180.02562 * 3 2 1 5 5 C 1.31918 * 122.52092 * 359.97438 * 4 3 2 6 6 C 1.38507 * 119.96671 * 0.02562 * 5 4 3 7 7 C 1.39732 * 120.17118 * 179.72008 * 2 1 3 8 8 C 1.48135 * 121.14688 * 0.02562 * 7 2 1 9 9 O 1.21520 * 119.99827 * 53.62244 * 8 7 2 10 10 N 1.34777 * 120.00230 * 233.62948 * 8 7 2 11 11 C 1.46505 * 119.99687 * 5.60412 * 10 8 7 12 12 C 1.50699 * 109.47025 * 90.00368 * 11 10 8 13 13 H 1.08004 * 119.99922 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99689 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99526 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00279 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47125 * 90.00112 * 16 14 12 18 18 H 1.48497 * 109.47096 * 210.00226 * 16 14 12 19 19 H 1.48503 * 109.47090 * 330.00091 * 16 14 12 20 20 C 1.46498 * 120.00020 * 185.60633 * 10 8 7 21 21 C 1.52995 * 109.47166 * 94.45144 * 20 10 8 22 22 C 1.53002 * 109.47063 * 175.25856 * 21 20 10 23 23 C 1.52994 * 109.47014 * 295.25987 * 21 20 10 24 24 H 1.08995 * 109.47101 * 85.75124 * 1 2 3 25 25 H 1.09003 * 109.47058 * 325.74730 * 1 2 3 26 26 H 1.09007 * 109.47230 * 205.75099 * 1 2 3 27 27 H 1.08001 * 120.01716 * 179.97438 * 5 4 3 28 28 H 1.07998 * 121.08628 * 179.97438 * 6 5 4 29 29 H 1.08997 * 109.46435 * 210.00193 * 11 10 8 30 30 H 1.09002 * 109.47280 * 329.99983 * 11 10 8 31 31 H 0.97006 * 120.00182 * 179.97438 * 15 14 12 32 32 H 1.09003 * 109.46776 * 214.45156 * 20 10 8 33 33 H 1.09001 * 109.46813 * 334.44593 * 20 10 8 34 34 H 1.09000 * 109.47318 * 55.26191 * 21 20 10 35 35 H 1.09000 * 109.46780 * 60.00005 * 22 21 20 36 36 H 1.08995 * 109.46884 * 179.97438 * 22 21 20 37 37 H 1.08997 * 109.47335 * 299.99868 * 22 21 20 38 38 H 1.08997 * 109.47452 * 305.93501 * 23 21 20 39 39 H 1.09001 * 109.47485 * 65.94093 * 23 21 20 40 40 H 1.09001 * 109.47226 * 185.93988 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4519 1.1887 -0.0005 5 6 4.2024 0.1037 -0.0005 6 6 3.6091 -1.1478 -0.0006 7 6 2.2093 -1.2080 0.0059 8 6 1.4983 -2.5076 0.0117 9 8 0.6594 -2.7450 -0.8349 10 7 1.7817 -3.4266 0.9559 11 6 2.7013 -3.0958 2.0474 12 6 1.9236 -2.5181 3.2017 13 1 0.8517 -2.4079 3.1294 14 6 2.5808 -2.1292 4.3497 15 7 1.9022 -1.6245 5.3568 16 14 4.4349 -2.3191 4.4745 17 1 5.0936 -1.0848 3.9766 18 1 4.8150 -2.5458 5.8920 19 1 4.8701 -3.4779 3.6540 20 6 1.1702 -4.7563 0.8908 21 6 2.1178 -5.7187 0.1720 22 6 1.5328 -7.1320 0.2077 23 6 2.2896 -5.2744 -1.2819 24 1 -0.3633 0.0761 -1.0248 25 1 -0.3633 0.8495 0.5784 26 1 -0.3634 -0.9257 0.4465 27 1 5.2788 0.1914 -0.0014 28 1 4.2060 -2.0479 -0.0010 29 1 3.2181 -3.9985 2.3730 30 1 3.4310 -2.3650 1.6988 31 1 2.3644 -1.3513 6.1647 32 1 0.9814 -5.1192 1.9011 33 1 0.2290 -4.6970 0.3442 34 1 3.0872 -5.7141 0.6703 35 1 0.5634 -7.1367 -0.2907 36 1 2.2077 -7.8176 -0.3048 37 1 1.4104 -7.4486 1.2435 38 1 1.3102 -5.1774 -1.7504 39 1 2.8026 -4.3131 -1.3099 40 1 2.8784 -6.0162 -1.8214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701771274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:55 Heat of formation + Delta-G solvation = -5.271505 kcal Electronic energy + Delta-G solvation = -22553.228069 eV Core-core repulsion = 19367.673889 eV Total energy + Delta-G solvation = -3185.554180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.38468 -40.71527 -37.64033 -35.96461 -34.82852 -34.51785 -33.91834 -30.08122 -29.52303 -28.05687 -27.76663 -25.95172 -24.47583 -24.09937 -21.63578 -20.44870 -19.20596 -18.83123 -18.35729 -17.60579 -16.90857 -16.40972 -16.29796 -16.06512 -15.55703 -15.48350 -14.85545 -14.60713 -14.47002 -14.23843 -13.97375 -13.87366 -13.57262 -13.37245 -13.19030 -12.86909 -12.70798 -12.62057 -12.34713 -12.06423 -11.92786 -11.83120 -11.76383 -11.56700 -11.40817 -11.14889 -10.84615 -10.76644 -10.56600 -9.51257 -8.34976 -6.42925 -0.56087 -0.16241 1.34177 1.35929 1.44955 1.48203 2.02140 2.29436 2.50306 2.95822 2.99510 3.25127 3.35634 3.56365 3.80728 3.94107 4.02816 4.17078 4.20477 4.36628 4.46278 4.56833 4.58249 4.63822 4.65322 4.73287 4.84645 4.87129 4.94267 4.98589 5.01870 5.07465 5.16600 5.21793 5.37840 5.40077 5.45949 5.60634 6.08164 6.43027 6.62275 7.02342 7.22974 7.59004 8.81312 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.009712 C = 0.006471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.845515 B = 2882.316851 C = 4326.099784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.099 3.901 3 N -0.270 5.270 4 N -0.258 5.258 5 C 0.036 3.964 6 C -0.079 4.079 7 C -0.124 4.124 8 C 0.570 3.430 9 O -0.559 6.559 10 N -0.579 5.579 11 C 0.209 3.791 12 C -0.543 4.543 13 H 0.027 0.973 14 C 0.016 3.984 15 N -0.942 5.942 16 Si 0.931 3.069 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.223 1.223 20 C 0.117 3.883 21 C -0.106 4.106 22 C -0.138 4.138 23 C -0.133 4.133 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.221 0.779 28 H 0.184 0.816 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.267 0.733 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.033 0.967 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 -7.054 -11.327 14.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 N -0.112 5.112 4 N -0.099 5.099 5 C -0.128 4.128 6 C -0.108 4.108 7 C -0.138 4.138 8 C 0.356 3.644 9 O -0.440 6.440 10 N -0.307 5.307 11 C 0.088 3.912 12 C -0.581 4.581 13 H 0.045 0.955 14 C -0.183 4.183 15 N -0.581 5.581 16 Si 0.753 3.247 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.146 1.146 20 C -0.005 4.005 21 C -0.125 4.125 22 C -0.195 4.195 23 C -0.190 4.190 24 H 0.121 0.879 25 H 0.106 0.894 26 H 0.081 0.919 27 H 0.238 0.762 28 H 0.202 0.798 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.956 -5.474 -11.570 14.117 hybrid contribution 0.266 -1.129 0.941 1.493 sum 6.222 -6.603 -10.629 13.975 Atomic orbital electron populations 1.20654 0.86586 1.03410 1.04439 1.23102 0.99872 0.89099 0.92471 1.72874 1.02404 1.24427 1.11505 1.72686 0.99475 1.29382 1.08330 1.24863 1.04280 0.88271 0.95394 1.22950 0.93100 1.01817 0.92951 1.21138 0.96225 0.95287 1.01183 1.17902 0.81904 0.82981 0.81589 1.90707 1.33818 1.79536 1.39896 1.47830 1.45711 1.12796 1.24380 1.19878 0.89412 0.97536 0.84390 1.21499 0.94477 1.42331 0.99796 0.95505 1.25842 1.03925 0.93726 0.94764 1.70058 1.38595 1.43157 1.06265 0.85946 0.79068 0.80949 0.78724 1.18853 1.21125 1.14552 1.21686 0.96764 0.80780 1.01302 1.21474 0.99319 0.95425 0.96309 1.21721 1.01258 0.94180 1.02385 1.21720 1.01396 1.00288 0.95635 0.87925 0.89386 0.91936 0.76210 0.79831 0.92517 0.93423 0.92361 0.90711 0.90953 0.90610 0.92537 0.90823 0.92177 0.93550 0.94775 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.23 9.52 71.24 0.68 -2.55 16 2 C 0.10 3.81 6.91 42.91 0.30 4.11 16 3 N -0.27 -10.51 11.42 -46.95 -0.54 -11.05 16 4 N -0.26 -9.15 11.48 -57.33 -0.66 -9.81 16 5 C 0.04 1.01 11.30 84.74 0.96 1.96 16 6 C -0.08 -2.32 7.77 22.79 0.18 -2.14 16 7 C -0.12 -4.54 4.99 -19.83 -0.10 -4.64 16 8 C 0.57 21.65 4.79 86.87 0.42 22.07 16 9 O -0.56 -22.55 14.79 -3.78 -0.06 -22.61 16 10 N -0.58 -21.43 2.28 -829.24 -1.89 -23.32 16 11 C 0.21 8.37 4.08 85.63 0.35 8.72 16 12 C -0.54 -28.34 9.94 25.60 0.25 -28.09 16 13 H 0.03 1.63 8.06 -2.91 -0.02 1.61 16 14 C 0.02 0.88 5.47 84.65 0.46 1.34 16 15 N -0.94 -56.11 13.96 21.45 0.30 -55.81 16 16 Si 0.93 38.40 27.47 68.60 1.88 40.28 16 17 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 18 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.22 -7.74 6.54 99.48 0.65 -7.09 16 20 C 0.12 3.76 4.98 86.38 0.43 4.19 16 21 C -0.11 -2.62 3.13 -10.80 -0.03 -2.65 16 22 C -0.14 -2.70 9.19 71.98 0.66 -2.03 16 23 C -0.13 -3.28 8.10 71.98 0.58 -2.70 16 24 H 0.10 3.11 8.14 -2.39 -0.02 3.10 16 25 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 26 H 0.06 2.39 6.69 -2.38 -0.02 2.38 16 27 H 0.22 3.79 8.06 -2.91 -0.02 3.77 16 28 H 0.18 4.08 7.46 -2.91 -0.02 4.06 16 29 H 0.06 2.10 7.13 -2.39 -0.02 2.08 16 30 H 0.05 1.78 3.82 -2.39 -0.01 1.77 16 31 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 32 H 0.07 2.49 8.11 -2.39 -0.02 2.47 16 33 H 0.07 2.44 7.23 -2.39 -0.02 2.43 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.05 1.26 8.03 -2.39 -0.02 1.25 16 39 H 0.03 0.92 6.98 -2.39 -0.02 0.90 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -68.62 329.18 5.15 -63.47 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.98 Total: 21.25 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 5.14 Total: -2.41 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -2.78 Total: -99.98 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.06 Total: -22.61 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 1.88 Total: 40.28 kcal Total: -68.62 5.15 -63.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701771274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.197 kcal (2) G-P(sol) polarization free energy of solvation -68.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds