Wall clock time and date at job start Mon Mar 30 2020 02:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50707 * 119.99575 * 2 1 4 4 C 1.33016 * 120.00250 * 180.02562 * 2 1 3 5 5 C 1.50707 * 120.00103 * 172.76581 * 4 2 1 6 6 C 1.47053 * 119.99827 * 352.75821 * 4 2 1 7 7 O 1.21631 * 120.00152 * 353.77979 * 6 4 2 8 8 N 1.34782 * 119.99924 * 173.77393 * 6 4 2 9 9 C 1.39359 * 119.99780 * 180.02562 * 8 6 4 10 10 C 1.36162 * 126.27008 * 0.15123 * 9 8 6 11 11 C 1.39719 * 107.86152 * 180.29235 * 10 9 8 12 12 C 1.50699 * 125.77741 * 179.71634 * 11 10 9 13 13 N 1.30833 * 108.44533 * 359.74175 * 11 10 9 14 14 N 1.35816 * 126.26262 * 180.02562 * 9 8 6 15 15 C 1.46497 * 126.09256 * 359.96837 * 14 9 8 16 16 C 1.50697 * 109.47150 * 269.71353 * 15 14 9 17 17 H 1.08002 * 120.00137 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99875 * 179.72445 * 16 15 14 19 19 N 1.31518 * 119.99968 * 180.27843 * 18 16 15 20 20 Si 1.86800 * 120.00089 * 0.27926 * 18 16 15 21 21 H 1.48495 * 109.47160 * 90.00000 * 20 18 16 22 22 H 1.48498 * 109.47107 * 209.99995 * 20 18 16 23 23 H 1.48503 * 109.46974 * 329.99919 * 20 18 16 24 24 H 1.08999 * 109.46667 * 264.47089 * 1 2 3 25 25 H 1.08995 * 109.47125 * 24.47320 * 1 2 3 26 26 H 1.08996 * 109.46883 * 144.47235 * 1 2 3 27 27 H 1.09005 * 109.46358 * 183.77828 * 3 2 1 28 28 H 1.08997 * 109.47240 * 303.77316 * 3 2 1 29 29 H 1.08997 * 109.46635 * 63.78163 * 3 2 1 30 30 H 1.09006 * 109.46782 * 176.64976 * 5 4 2 31 31 H 1.08999 * 109.46649 * 296.64145 * 5 4 2 32 32 H 1.09000 * 109.47121 * 56.64659 * 5 4 2 33 33 H 0.96996 * 119.99808 * 0.02562 * 8 6 4 34 34 H 1.07998 * 126.06637 * 0.03140 * 10 9 8 35 35 H 1.08998 * 109.47080 * 269.99826 * 12 11 10 36 36 H 1.08998 * 109.47134 * 30.00152 * 12 11 10 37 37 H 1.09002 * 109.47039 * 150.00403 * 12 11 10 38 38 H 1.08999 * 109.46926 * 149.71645 * 15 14 9 39 39 H 1.08995 * 109.47149 * 29.71781 * 15 14 9 40 40 H 0.97002 * 120.00152 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1722 -1.1519 -0.0005 5 6 3.6702 -1.1570 -0.1649 6 6 1.4457 -2.4204 0.1595 7 8 0.2545 -2.4123 0.4051 8 7 2.0999 -3.5921 0.0338 9 6 1.4113 -4.7943 0.1849 10 6 0.0844 -4.9339 0.4562 11 6 -0.1960 -6.3005 0.5326 12 6 -1.5443 -6.9086 0.8212 13 7 0.9104 -6.9630 0.3118 14 7 1.9406 -6.0411 0.0860 15 6 3.3406 -6.3642 -0.1998 16 6 3.5324 -6.4933 -1.6890 17 1 2.6953 -6.3487 -2.3558 18 6 4.7780 -6.7899 -2.2004 19 7 4.9466 -6.8972 -3.5004 20 14 6.2261 -7.0394 -1.0471 21 1 6.3150 -8.4721 -0.6670 22 1 7.4794 -6.6299 -1.7303 23 1 6.0351 -6.2145 0.1729 24 1 -0.3632 -0.0990 1.0229 25 1 -0.3633 0.9353 -0.4257 26 1 -0.3633 -0.8363 -0.5972 27 1 3.3302 1.1071 -0.0677 28 1 1.9474 1.9055 -0.8542 29 1 2.0489 1.8468 0.9219 30 1 4.0415 -2.1785 -0.0808 31 1 3.9295 -0.7558 -1.1446 32 1 4.1231 -0.5407 0.6118 33 1 3.0499 -3.5986 -0.1618 34 1 -0.6246 -4.1307 0.5928 35 1 -1.6601 -7.0419 1.8968 36 1 -2.3278 -6.2476 0.4506 37 1 -1.6203 -7.8761 0.3250 38 1 3.6021 -7.3057 0.2831 39 1 3.9820 -5.5698 0.1816 40 1 5.8228 -7.1062 -3.8602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751364911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:55 Heat of formation + Delta-G solvation = 53.882157 kcal Electronic energy + Delta-G solvation = -21623.224134 eV Core-core repulsion = 18440.235050 eV Total energy + Delta-G solvation = -3182.989085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91525 -39.51330 -36.21166 -34.84836 -33.77258 -32.17171 -30.67594 -29.43549 -28.42463 -27.73780 -26.27987 -25.07841 -22.77586 -21.98031 -19.98185 -19.51419 -17.87558 -17.18567 -16.61091 -16.17129 -15.42039 -15.18659 -14.60179 -14.32536 -14.05895 -13.98578 -13.58331 -13.14365 -12.95462 -12.76592 -12.59628 -12.57298 -12.40807 -12.27644 -12.15154 -11.91281 -11.74700 -11.68865 -11.41866 -11.12281 -10.82937 -10.43392 -10.21142 -9.82885 -9.74649 -9.29004 -8.88433 -8.85459 -7.90732 -7.43103 -6.32822 -4.37002 1.25145 2.58109 2.84469 3.08957 3.14682 3.18313 3.31639 3.68933 3.74011 4.14313 4.62835 4.72252 4.93501 4.94405 5.06447 5.31953 5.33484 5.46969 5.51746 5.58834 5.63144 5.70309 5.80656 5.84366 6.01495 6.06187 6.08464 6.18782 6.27585 6.33032 6.36853 6.48229 6.56703 6.70936 6.77130 7.20891 7.48529 7.61717 7.81205 8.21232 8.37287 8.59904 8.74001 9.21849 10.79473 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.006361 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.544496 B = 4400.729933 C = 6162.594594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.037 4.037 3 C -0.129 4.129 4 C -0.196 4.196 5 C -0.115 4.115 6 C 0.559 3.441 7 O -0.514 6.514 8 N -0.638 5.638 9 C 0.306 3.694 10 C -0.291 4.291 11 C 0.054 3.946 12 C -0.062 4.062 13 N -0.283 5.283 14 N -0.347 5.347 15 C 0.231 3.769 16 C -0.545 4.545 17 H 0.081 0.919 18 C 0.080 3.920 19 N -0.883 5.883 20 Si 0.873 3.127 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.266 1.266 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.414 0.586 34 H 0.164 0.836 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.038 0.962 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.268 14.101 8.476 16.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.039 4.039 3 C -0.186 4.186 4 C -0.199 4.199 5 C -0.171 4.171 6 C 0.349 3.651 7 O -0.391 6.391 8 N -0.285 5.285 9 C 0.084 3.916 10 C -0.323 4.323 11 C -0.112 4.112 12 C -0.121 4.121 13 N -0.108 5.108 14 N -0.133 5.133 15 C 0.111 3.889 16 C -0.583 4.583 17 H 0.100 0.900 18 C -0.125 4.125 19 N -0.520 5.520 20 Si 0.699 3.301 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.190 1.190 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.252 0.748 34 H 0.181 0.819 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.241 12.920 8.356 15.961 hybrid contribution 1.317 0.492 0.218 1.423 sum -2.923 13.413 8.574 16.186 Atomic orbital electron populations 1.21121 0.90755 1.02482 1.03571 1.22349 0.96726 0.93852 0.90989 1.21059 1.00483 0.94287 1.02737 1.21029 0.96461 0.91846 1.10547 1.20801 0.90933 1.02794 1.02605 1.18246 0.86722 0.83118 0.77006 1.90684 1.14647 1.86721 1.47021 1.42782 1.13428 1.02970 1.69360 1.18049 0.91429 0.80364 1.01754 1.21277 0.93699 0.96812 1.20514 1.22037 0.95262 0.92620 1.01253 1.20028 0.90211 1.00403 1.01462 1.77326 0.94940 1.14266 1.24263 1.49027 1.09547 1.00692 1.54014 1.19918 0.72634 0.97614 0.98703 1.21203 0.97313 1.50801 0.88976 0.90046 1.24823 0.98347 0.94144 0.95138 1.69876 1.24057 1.46816 1.11236 0.86911 0.82437 0.79713 0.81063 1.19447 1.20455 1.19032 0.90361 0.92734 0.89143 0.90840 0.90723 0.90475 0.91902 0.90600 0.90905 0.74801 0.81913 0.91363 0.91049 0.91429 0.93196 0.94446 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 8.48 36.01 0.31 -1.10 16 2 C -0.04 -0.41 6.10 -101.16 -0.62 -1.03 16 3 C -0.13 -0.99 9.91 36.01 0.36 -0.64 16 4 C -0.20 -2.53 5.99 -102.86 -0.62 -3.14 16 5 C -0.11 -1.21 8.56 36.01 0.31 -0.91 16 6 C 0.56 9.31 7.55 -12.68 -0.10 9.21 16 7 O -0.51 -9.31 10.41 5.25 0.05 -9.25 16 8 N -0.64 -11.68 5.37 -12.43 -0.07 -11.75 16 9 C 0.31 6.59 7.68 -152.75 -1.17 5.42 16 10 C -0.29 -6.05 9.58 -39.78 -0.38 -6.43 16 11 C 0.05 1.09 7.20 -82.46 -0.59 0.50 16 12 C -0.06 -0.93 10.44 36.01 0.38 -0.56 16 13 N -0.28 -6.63 12.56 33.64 0.42 -6.21 16 14 N -0.35 -8.18 3.62 -61.45 -0.22 -8.41 16 15 C 0.23 5.53 5.09 -5.20 -0.03 5.50 16 16 C -0.54 -15.12 9.94 -34.44 -0.34 -15.46 16 17 H 0.08 2.59 8.06 -52.49 -0.42 2.16 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.88 -25.86 13.96 55.43 0.77 -25.09 16 20 Si 0.87 19.72 27.47 -169.99 -4.67 15.05 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 23 H -0.27 -5.56 6.54 56.52 0.37 -5.19 16 24 H 0.08 0.91 8.04 -51.93 -0.42 0.50 16 25 H 0.05 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.09 1.26 6.14 -51.93 -0.32 0.94 16 27 H 0.07 0.51 5.84 -51.93 -0.30 0.21 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.71 5.94 -51.93 -0.31 0.40 16 31 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.07 0.62 7.35 -51.93 -0.38 0.24 16 33 H 0.41 7.03 5.78 -40.82 -0.24 6.79 16 34 H 0.16 3.25 5.82 -52.49 -0.31 2.95 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 1.20 7.58 -51.93 -0.39 0.80 16 39 H 0.04 0.82 6.56 -51.93 -0.34 0.48 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 328.45 15.07 4.95 4.95 Total: -1.00 -32.52 328.45 -6.90 -39.43 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.55 Total: 7.82 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.60 Total: -6.54 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.91 Total: -51.45 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.05 Total: -9.25 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.05 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.52 -6.90 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751364911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.309 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds