Wall clock time and date at job start Mon Mar 30 2020 02:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50707 * 119.99575 * 2 1 4 4 C 1.33016 * 120.00250 * 180.02562 * 2 1 3 5 5 C 1.50707 * 120.00103 * 172.76581 * 4 2 1 6 6 C 1.47053 * 119.99827 * 352.75821 * 4 2 1 7 7 O 1.21631 * 120.00152 * 353.77979 * 6 4 2 8 8 N 1.34782 * 119.99924 * 173.77393 * 6 4 2 9 9 C 1.39359 * 119.99780 * 180.02562 * 8 6 4 10 10 C 1.36162 * 126.27008 * 0.15123 * 9 8 6 11 11 C 1.39719 * 107.86152 * 180.29235 * 10 9 8 12 12 C 1.50699 * 125.77741 * 179.71634 * 11 10 9 13 13 N 1.30833 * 108.44533 * 359.74175 * 11 10 9 14 14 N 1.35816 * 126.26262 * 180.02562 * 9 8 6 15 15 C 1.46497 * 126.09256 * 359.96837 * 14 9 8 16 16 C 1.50697 * 109.47150 * 269.71353 * 15 14 9 17 17 H 1.08002 * 120.00137 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99875 * 179.72445 * 16 15 14 19 19 N 1.31518 * 119.99968 * 180.27843 * 18 16 15 20 20 Si 1.86800 * 120.00089 * 0.27926 * 18 16 15 21 21 H 1.48495 * 109.47160 * 90.00000 * 20 18 16 22 22 H 1.48498 * 109.47107 * 209.99995 * 20 18 16 23 23 H 1.48503 * 109.46974 * 329.99919 * 20 18 16 24 24 H 1.08999 * 109.46667 * 264.47089 * 1 2 3 25 25 H 1.08995 * 109.47125 * 24.47320 * 1 2 3 26 26 H 1.08996 * 109.46883 * 144.47235 * 1 2 3 27 27 H 1.09005 * 109.46358 * 183.77828 * 3 2 1 28 28 H 1.08997 * 109.47240 * 303.77316 * 3 2 1 29 29 H 1.08997 * 109.46635 * 63.78163 * 3 2 1 30 30 H 1.09006 * 109.46782 * 176.64976 * 5 4 2 31 31 H 1.08999 * 109.46649 * 296.64145 * 5 4 2 32 32 H 1.09000 * 109.47121 * 56.64659 * 5 4 2 33 33 H 0.96996 * 119.99808 * 0.02562 * 8 6 4 34 34 H 1.07998 * 126.06637 * 0.03140 * 10 9 8 35 35 H 1.08998 * 109.47080 * 269.99826 * 12 11 10 36 36 H 1.08998 * 109.47134 * 30.00152 * 12 11 10 37 37 H 1.09002 * 109.47039 * 150.00403 * 12 11 10 38 38 H 1.08999 * 109.46926 * 149.71645 * 15 14 9 39 39 H 1.08995 * 109.47149 * 29.71781 * 15 14 9 40 40 H 0.97002 * 120.00152 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1722 -1.1519 -0.0005 5 6 3.6702 -1.1570 -0.1649 6 6 1.4457 -2.4204 0.1595 7 8 0.2545 -2.4123 0.4051 8 7 2.0999 -3.5921 0.0338 9 6 1.4113 -4.7943 0.1849 10 6 0.0844 -4.9339 0.4562 11 6 -0.1960 -6.3005 0.5326 12 6 -1.5443 -6.9086 0.8212 13 7 0.9104 -6.9630 0.3118 14 7 1.9406 -6.0411 0.0860 15 6 3.3406 -6.3642 -0.1998 16 6 3.5324 -6.4933 -1.6890 17 1 2.6953 -6.3487 -2.3558 18 6 4.7780 -6.7899 -2.2004 19 7 4.9466 -6.8972 -3.5004 20 14 6.2261 -7.0394 -1.0471 21 1 6.3150 -8.4721 -0.6670 22 1 7.4794 -6.6299 -1.7303 23 1 6.0351 -6.2145 0.1729 24 1 -0.3632 -0.0990 1.0229 25 1 -0.3633 0.9353 -0.4257 26 1 -0.3633 -0.8363 -0.5972 27 1 3.3302 1.1071 -0.0677 28 1 1.9474 1.9055 -0.8542 29 1 2.0489 1.8468 0.9219 30 1 4.0415 -2.1785 -0.0808 31 1 3.9295 -0.7558 -1.1446 32 1 4.1231 -0.5407 0.6118 33 1 3.0499 -3.5986 -0.1618 34 1 -0.6246 -4.1307 0.5928 35 1 -1.6601 -7.0419 1.8968 36 1 -2.3278 -6.2476 0.4506 37 1 -1.6203 -7.8761 0.3250 38 1 3.6021 -7.3057 0.2831 39 1 3.9820 -5.5698 0.1816 40 1 5.8228 -7.1062 -3.8602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751364911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:54 Heat of formation + Delta-G solvation = 33.153365 kcal Electronic energy + Delta-G solvation = -21624.123002 eV Core-core repulsion = 18440.235050 eV Total energy + Delta-G solvation = -3183.887953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.46162 -40.87548 -37.21059 -36.34228 -35.61980 -34.02106 -31.76191 -30.99534 -29.77424 -28.67699 -28.01495 -26.06495 -24.48610 -23.45175 -21.46645 -21.02741 -19.29650 -19.18389 -18.14183 -17.42207 -16.82979 -16.56386 -16.24055 -15.61478 -15.43371 -15.13149 -14.85752 -14.63378 -14.50479 -14.12410 -13.77465 -13.73280 -13.55915 -13.45519 -13.20733 -13.10807 -12.96292 -12.91384 -12.64346 -12.55786 -12.21354 -12.12257 -11.86060 -11.75230 -11.43420 -10.94750 -10.59341 -9.82663 -9.60479 -9.04715 -8.44648 -6.57504 0.18446 1.02614 1.28524 1.35033 1.36543 1.45066 1.83869 2.19734 2.22483 2.28801 2.86692 3.54823 3.75779 3.86156 4.10354 4.16176 4.28100 4.42178 4.54811 4.61557 4.71553 4.74119 4.78549 4.83664 4.85753 4.88616 4.92686 4.96523 4.98945 5.12264 5.14708 5.16687 5.21059 5.26186 5.55501 5.69226 5.85754 5.97105 6.20689 6.34095 6.46435 6.93676 7.00284 7.07607 8.71975 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.006361 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.544496 B = 4400.729933 C = 6162.594594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.017 4.017 3 C -0.128 4.128 4 C -0.222 4.222 5 C -0.111 4.111 6 C 0.551 3.449 7 O -0.535 6.535 8 N -0.640 5.640 9 C 0.300 3.700 10 C -0.305 4.305 11 C 0.060 3.940 12 C -0.060 4.060 13 N -0.327 5.327 14 N -0.371 5.371 15 C 0.239 3.761 16 C -0.555 4.555 17 H 0.021 0.979 18 C 0.025 3.975 19 N -0.933 5.933 20 Si 0.951 3.049 21 H -0.267 1.267 22 H -0.270 1.270 23 H -0.234 1.234 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.418 0.582 34 H 0.170 0.830 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.307 16.172 10.352 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.019 4.019 3 C -0.184 4.184 4 C -0.225 4.225 5 C -0.168 4.168 6 C 0.344 3.656 7 O -0.413 6.413 8 N -0.289 5.289 9 C 0.078 3.922 10 C -0.337 4.337 11 C -0.105 4.105 12 C -0.119 4.119 13 N -0.152 5.152 14 N -0.156 5.156 15 C 0.120 3.880 16 C -0.593 4.593 17 H 0.039 0.961 18 C -0.175 4.175 19 N -0.571 5.571 20 Si 0.771 3.229 21 H -0.191 1.191 22 H -0.195 1.195 23 H -0.157 1.157 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.257 0.743 34 H 0.187 0.813 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.295 15.022 10.239 18.476 hybrid contribution 0.811 -0.042 -0.444 0.925 sum -2.485 14.980 9.795 18.069 Atomic orbital electron populations 1.21110 0.91360 1.02693 1.03003 1.22764 0.96624 0.94943 0.87563 1.21174 1.00632 0.92277 1.04307 1.21052 0.97668 0.90243 1.13537 1.20834 0.89243 1.02676 1.04013 1.19057 0.86803 0.83707 0.76054 1.90657 1.15654 1.86993 1.47986 1.43000 1.13687 1.02461 1.69712 1.18480 0.92109 0.80867 1.00730 1.21498 0.93675 0.97316 1.21178 1.22898 0.96387 0.92575 0.98688 1.20234 0.87665 1.00714 1.03273 1.77262 0.95913 1.15447 1.26566 1.48965 1.09499 1.01496 1.55682 1.19732 0.73904 0.98532 0.95882 1.21213 0.95954 1.51635 0.90521 0.96092 1.25837 1.01687 0.93018 0.96980 1.70033 1.25357 1.47890 1.13844 0.85687 0.77593 0.80120 0.79465 1.19146 1.19457 1.15698 0.90646 0.89955 0.92086 0.89744 0.89087 0.88575 0.93107 0.89728 0.88418 0.74318 0.81313 0.88858 0.88918 0.90953 0.93018 0.91825 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 8.48 71.24 0.60 -2.09 16 2 C -0.02 -0.34 6.10 -17.61 -0.11 -0.45 16 3 C -0.13 -1.46 9.91 71.24 0.71 -0.76 16 4 C -0.22 -5.47 5.99 -18.71 -0.11 -5.58 16 5 C -0.11 -2.14 8.56 71.24 0.61 -1.53 16 6 C 0.55 18.52 7.55 86.55 0.65 19.17 16 7 O -0.53 -19.71 10.41 -4.13 -0.04 -19.75 16 8 N -0.64 -23.90 5.37 -311.47 -1.67 -25.57 16 9 C 0.30 13.27 7.68 131.19 1.01 14.28 16 10 C -0.30 -12.89 9.58 22.14 0.21 -12.68 16 11 C 0.06 2.47 7.20 43.07 0.31 2.78 16 12 C -0.06 -1.73 10.44 71.24 0.74 -0.99 16 13 N -0.33 -15.71 12.56 -47.48 -0.60 -16.31 16 14 N -0.37 -17.94 3.62 -348.34 -1.26 -19.20 16 15 C 0.24 11.59 5.09 85.63 0.44 12.03 16 16 C -0.56 -32.04 9.94 25.60 0.25 -31.79 16 17 H 0.02 1.42 8.06 -2.91 -0.02 1.39 16 18 C 0.03 1.40 5.47 84.66 0.46 1.86 16 19 N -0.93 -56.33 13.96 21.45 0.30 -56.03 16 20 Si 0.95 40.13 27.47 68.60 1.88 42.02 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.23 -8.64 6.54 99.48 0.65 -7.99 16 24 H 0.08 1.68 8.04 -2.39 -0.02 1.66 16 25 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 26 H 0.06 1.71 6.14 -2.39 -0.01 1.69 16 27 H 0.08 0.83 5.84 -2.38 -0.01 0.82 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 1.09 5.94 -2.38 -0.01 1.08 16 31 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 32 H 0.10 1.36 7.35 -2.39 -0.02 1.34 16 33 H 0.42 14.40 5.78 -92.71 -0.54 13.86 16 34 H 0.17 6.85 5.82 -2.91 -0.02 6.83 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 2.46 7.58 -2.39 -0.02 2.45 16 39 H 0.06 2.72 6.56 -2.39 -0.02 2.70 16 40 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -75.07 328.45 4.86 -70.21 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.47 Total: 30.38 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 5.78 Total: -5.75 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -3.23 Total: -117.11 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.04 Total: -19.75 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.88 Total: 42.02 kcal Total: -75.07 4.86 -70.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751364911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.364 kcal (2) G-P(sol) polarization free energy of solvation -75.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds