Wall clock time and date at job start Mon Mar 30 2020 01:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38804 * 120.42766 * 2 1 4 4 C 1.39494 * 118.26604 * 179.72300 * 3 2 1 5 5 C 1.48457 * 120.55022 * 179.97438 * 4 3 2 6 6 O 1.21477 * 119.99909 * 353.23287 * 5 4 3 7 7 N 1.34773 * 119.99763 * 173.23707 * 5 4 3 8 8 C 1.46494 * 120.00363 * 3.13778 * 7 5 4 9 9 C 1.50704 * 109.46948 * 82.82493 * 8 7 5 10 10 H 1.07994 * 119.99946 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99795 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00160 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99973 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47016 * 90.00209 * 13 11 9 15 15 H 1.48502 * 109.47087 * 210.00117 * 13 11 9 16 16 H 1.48499 * 109.47101 * 330.00301 * 13 11 9 17 17 C 1.46502 * 119.99651 * 183.13988 * 7 5 4 18 18 C 1.53003 * 109.46955 * 84.30407 * 17 7 5 19 19 C 1.53004 * 109.47114 * 65.00173 * 18 17 7 20 20 C 1.53007 * 109.46911 * 184.99749 * 18 17 7 21 21 N 1.33102 * 118.89839 * 0.02562 * 4 3 2 22 22 C 1.31551 * 120.73798 * 359.97438 * 21 4 3 23 23 N 1.31911 * 121.92129 * 359.97438 * 22 21 4 24 24 H 1.09008 * 109.47003 * 90.00071 * 1 2 3 25 25 H 1.09003 * 109.47245 * 209.99791 * 1 2 3 26 26 H 1.09000 * 109.47298 * 330.00596 * 1 2 3 27 27 H 1.08001 * 120.86652 * 359.70186 * 3 2 1 28 28 H 1.09001 * 109.47729 * 202.82871 * 8 7 5 29 29 H 1.09004 * 109.47041 * 322.82825 * 8 7 5 30 30 H 0.97004 * 120.00180 * 180.02562 * 12 11 9 31 31 H 1.09004 * 109.46985 * 204.30234 * 17 7 5 32 32 H 1.09000 * 109.47305 * 324.30664 * 17 7 5 33 33 H 1.08998 * 109.47389 * 304.99734 * 18 17 7 34 34 H 1.08998 * 109.47351 * 59.99538 * 19 18 17 35 35 H 1.09000 * 109.47046 * 180.02562 * 19 18 17 36 36 H 1.09007 * 109.46994 * 299.99478 * 19 18 17 37 37 H 1.08995 * 109.46793 * 60.00114 * 20 18 17 38 38 H 1.09000 * 109.46823 * 179.97438 * 20 18 17 39 39 H 1.08998 * 109.47082 * 300.00173 * 20 18 17 40 40 H 1.08002 * 119.04027 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1443 0.0059 5 6 4.4062 2.3934 0.0057 6 8 3.8559 3.4686 -0.1237 7 7 5.7450 2.3343 0.1488 8 6 6.4158 1.0349 0.2357 9 6 6.6384 0.4908 -1.1519 10 1 6.3131 1.0565 -2.0124 11 6 7.2573 -0.7293 -1.3228 12 7 7.6531 -1.4185 -0.2749 13 14 7.5339 -1.4036 -3.0428 14 1 8.8521 -0.9437 -3.5487 15 1 7.5096 -2.8879 -3.0025 16 1 6.4598 -0.9152 -3.9446 17 6 6.5294 3.5697 0.2176 18 6 6.5306 4.0937 1.6552 19 6 7.2613 3.0993 2.5598 20 6 7.2433 5.4468 1.7042 21 7 4.2027 -0.0444 0.0108 22 6 3.4954 -1.1536 0.0106 23 7 2.1764 -1.1397 0.0061 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6912 2.1441 -0.0048 28 1 7.3761 1.1545 0.7375 29 1 5.7937 0.3420 0.8023 30 1 8.0889 -2.2768 -0.3952 31 1 7.5535 3.3678 -0.0963 32 1 6.0881 4.3176 -0.4412 33 1 5.5033 4.2115 1.9999 34 1 8.2886 2.9816 2.2151 35 1 7.2618 3.4724 3.5840 36 1 6.7536 2.1354 2.5249 37 1 6.7228 6.1551 1.0598 38 1 7.2437 5.8202 2.7282 39 1 8.2706 5.3290 1.3595 40 1 4.0096 -2.1033 0.0151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758778314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:04 Heat of formation + Delta-G solvation = 16.599819 kcal Electronic energy + Delta-G solvation = -22259.400897 eV Core-core repulsion = 19074.795129 eV Total energy + Delta-G solvation = -3184.605768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75461 -38.93719 -36.14828 -34.54969 -33.43562 -32.22186 -32.04301 -28.34492 -27.55868 -26.81764 -26.18922 -23.86109 -23.27105 -22.43598 -20.18741 -18.93433 -17.31121 -16.65645 -16.20652 -15.35113 -15.25869 -14.97316 -14.86330 -14.44400 -14.29187 -14.08178 -13.35672 -13.00913 -12.84107 -12.62338 -12.45317 -12.27627 -12.15072 -11.98732 -11.54139 -11.34830 -11.00648 -10.89266 -10.77396 -10.57494 -10.31885 -10.16722 -10.10410 -9.98012 -9.68033 -9.48539 -9.15821 -8.54831 -8.09645 -7.65927 -6.02184 -4.01413 1.05470 1.40947 3.27646 3.35026 3.36208 3.42079 3.69051 4.34948 4.37462 4.42398 4.65536 4.85403 5.21512 5.27413 5.28003 5.33842 5.39525 5.43772 5.53207 5.57450 5.84011 5.85243 5.91902 5.98905 6.04979 6.07178 6.15721 6.23663 6.32873 6.38904 6.60011 6.71673 6.74625 6.85569 7.35711 7.55001 7.72583 7.89907 8.25315 8.28317 8.54626 8.83454 9.00490 9.58471 11.05725 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010461 B = 0.009182 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.898123 B = 3048.859119 C = 5068.187452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.152 3.848 3 C -0.181 4.181 4 C 0.134 3.866 5 C 0.563 3.437 6 O -0.565 6.565 7 N -0.567 5.567 8 C 0.226 3.774 9 C -0.500 4.500 10 H 0.049 0.951 11 C 0.070 3.930 12 N -0.889 5.889 13 Si 0.884 3.116 14 H -0.282 1.282 15 H -0.286 1.286 16 H -0.278 1.278 17 C 0.122 3.878 18 C -0.111 4.111 19 C -0.145 4.145 20 C -0.141 4.141 21 N -0.418 5.418 22 C 0.286 3.714 23 N -0.519 5.519 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.149 0.851 28 H 0.030 0.970 29 H 0.082 0.918 30 H 0.260 0.740 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 5.121 3.943 9.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.005 3.995 3 C -0.204 4.204 4 C -0.014 4.014 5 C 0.348 3.652 6 O -0.446 6.446 7 N -0.294 5.294 8 C 0.107 3.893 9 C -0.539 4.539 10 H 0.068 0.932 11 C -0.132 4.132 12 N -0.529 5.529 13 Si 0.712 3.288 14 H -0.208 1.208 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.002 4.002 18 C -0.131 4.131 19 C -0.203 4.203 20 C -0.199 4.199 21 N -0.134 5.134 22 C -0.001 4.001 23 N -0.235 5.235 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.166 0.834 28 H 0.048 0.952 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.655 4.643 3.935 9.019 hybrid contribution -0.014 0.105 -1.157 1.162 sum -6.669 4.749 2.778 8.645 Atomic orbital electron populations 1.20701 0.88148 1.03585 1.03309 1.21606 0.97331 0.88136 0.92462 1.22663 0.95050 1.00616 1.02084 1.21745 0.91342 0.93644 0.94635 1.17812 0.82763 0.86582 0.78002 1.90671 1.71828 1.28985 1.53096 1.48285 1.05121 1.09732 1.66270 1.20195 0.93182 0.77591 0.98357 1.21245 1.37096 1.03625 0.91946 0.93229 1.24734 0.95826 0.96469 0.96175 1.69919 1.40477 1.13918 1.28547 0.86733 0.78457 0.78216 0.85373 1.20820 1.21151 1.20323 1.21487 0.96432 0.86641 0.95615 1.21488 1.00040 0.95123 0.96405 1.21869 1.00609 0.99647 0.98126 1.21745 1.00392 0.96448 1.01288 1.69544 1.38002 0.97626 1.08206 1.25229 0.85733 0.98063 0.91057 1.68161 1.11257 1.30341 1.13696 0.90107 0.90220 0.90437 0.83354 0.95176 0.90110 0.93002 0.90019 0.91132 0.91293 0.92575 0.93604 0.91868 0.92788 0.92928 0.92638 0.78678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.22 36.00 0.37 -0.71 16 2 C 0.15 2.38 6.83 -82.24 -0.56 1.82 16 3 C -0.18 -3.11 9.41 -38.90 -0.37 -3.48 16 4 C 0.13 2.75 6.64 -82.64 -0.55 2.20 16 5 C 0.56 12.15 7.56 -12.05 -0.09 12.05 16 6 O -0.57 -12.57 16.10 5.39 0.09 -12.48 16 7 N -0.57 -12.04 2.21 -175.94 -0.39 -12.43 16 8 C 0.23 5.34 3.65 -5.20 -0.02 5.32 16 9 C -0.50 -13.02 7.99 -34.44 -0.28 -13.30 16 10 H 0.05 1.36 7.81 -52.49 -0.41 0.95 16 11 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 12 N -0.89 -23.99 13.29 55.43 0.74 -23.25 16 13 Si 0.88 20.90 29.54 -169.99 -5.02 15.88 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 C 0.12 2.22 4.78 -4.04 -0.02 2.20 16 18 C -0.11 -1.74 3.09 -90.61 -0.28 -2.02 16 19 C -0.15 -2.26 8.38 37.16 0.31 -1.95 16 20 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 21 N -0.42 -8.94 5.22 -11.14 -0.06 -8.99 16 22 C 0.29 5.47 12.27 -92.26 -1.13 4.33 16 23 N -0.52 -9.04 10.36 -10.81 -0.11 -9.15 16 24 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.15 2.29 7.75 -52.49 -0.41 1.88 16 28 H 0.03 0.75 6.95 -51.93 -0.36 0.38 16 29 H 0.08 2.01 5.27 -51.94 -0.27 1.74 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.08 1.47 8.02 -51.93 -0.42 1.06 16 32 H 0.07 1.29 7.56 -51.93 -0.39 0.90 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 1.12 6.46 -51.92 -0.34 0.79 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.20 3.46 8.06 -52.49 -0.42 3.03 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -29.24 332.91 -8.07 -37.30 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.96 Total: 1.35 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -2.37 Total: 6.76 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.18 Total: -53.83 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.24 -8.07 -37.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758778314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.900 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds