Wall clock time and date at job start Mon Mar 30 2020 01:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38804 * 120.42766 * 2 1 4 4 C 1.39494 * 118.26604 * 179.72300 * 3 2 1 5 5 C 1.48457 * 120.55022 * 179.97438 * 4 3 2 6 6 O 1.21477 * 119.99909 * 353.23287 * 5 4 3 7 7 N 1.34773 * 119.99763 * 173.23707 * 5 4 3 8 8 C 1.46494 * 120.00363 * 3.13778 * 7 5 4 9 9 C 1.50704 * 109.46948 * 82.82493 * 8 7 5 10 10 H 1.07994 * 119.99946 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99795 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00160 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99973 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47016 * 90.00209 * 13 11 9 15 15 H 1.48502 * 109.47087 * 210.00117 * 13 11 9 16 16 H 1.48499 * 109.47101 * 330.00301 * 13 11 9 17 17 C 1.46502 * 119.99651 * 183.13988 * 7 5 4 18 18 C 1.53003 * 109.46955 * 84.30407 * 17 7 5 19 19 C 1.53004 * 109.47114 * 65.00173 * 18 17 7 20 20 C 1.53007 * 109.46911 * 184.99749 * 18 17 7 21 21 N 1.33102 * 118.89839 * 0.02562 * 4 3 2 22 22 C 1.31551 * 120.73798 * 359.97438 * 21 4 3 23 23 N 1.31911 * 121.92129 * 359.97438 * 22 21 4 24 24 H 1.09008 * 109.47003 * 90.00071 * 1 2 3 25 25 H 1.09003 * 109.47245 * 209.99791 * 1 2 3 26 26 H 1.09000 * 109.47298 * 330.00596 * 1 2 3 27 27 H 1.08001 * 120.86652 * 359.70186 * 3 2 1 28 28 H 1.09001 * 109.47729 * 202.82871 * 8 7 5 29 29 H 1.09004 * 109.47041 * 322.82825 * 8 7 5 30 30 H 0.97004 * 120.00180 * 180.02562 * 12 11 9 31 31 H 1.09004 * 109.46985 * 204.30234 * 17 7 5 32 32 H 1.09000 * 109.47305 * 324.30664 * 17 7 5 33 33 H 1.08998 * 109.47389 * 304.99734 * 18 17 7 34 34 H 1.08998 * 109.47351 * 59.99538 * 19 18 17 35 35 H 1.09000 * 109.47046 * 180.02562 * 19 18 17 36 36 H 1.09007 * 109.46994 * 299.99478 * 19 18 17 37 37 H 1.08995 * 109.46793 * 60.00114 * 20 18 17 38 38 H 1.09000 * 109.46823 * 179.97438 * 20 18 17 39 39 H 1.08998 * 109.47082 * 300.00173 * 20 18 17 40 40 H 1.08002 * 119.04027 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1443 0.0059 5 6 4.4062 2.3934 0.0057 6 8 3.8559 3.4686 -0.1237 7 7 5.7450 2.3343 0.1488 8 6 6.4158 1.0349 0.2357 9 6 6.6384 0.4908 -1.1519 10 1 6.3131 1.0565 -2.0124 11 6 7.2573 -0.7293 -1.3228 12 7 7.6531 -1.4185 -0.2749 13 14 7.5339 -1.4036 -3.0428 14 1 8.8521 -0.9437 -3.5487 15 1 7.5096 -2.8879 -3.0025 16 1 6.4598 -0.9152 -3.9446 17 6 6.5294 3.5697 0.2176 18 6 6.5306 4.0937 1.6552 19 6 7.2613 3.0993 2.5598 20 6 7.2433 5.4468 1.7042 21 7 4.2027 -0.0444 0.0108 22 6 3.4954 -1.1536 0.0106 23 7 2.1764 -1.1397 0.0061 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6912 2.1441 -0.0048 28 1 7.3761 1.1545 0.7375 29 1 5.7937 0.3420 0.8023 30 1 8.0889 -2.2768 -0.3952 31 1 7.5535 3.3678 -0.0963 32 1 6.0881 4.3176 -0.4412 33 1 5.5033 4.2115 1.9999 34 1 8.2886 2.9816 2.2151 35 1 7.2618 3.4724 3.5840 36 1 6.7536 2.1354 2.5249 37 1 6.7228 6.1551 1.0598 38 1 7.2437 5.8202 2.7282 39 1 8.2706 5.3290 1.3595 40 1 4.0096 -2.1033 0.0151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758778314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:04 Heat of formation + Delta-G solvation = 1.811668 kcal Electronic energy + Delta-G solvation = -22260.042160 eV Core-core repulsion = 19074.795129 eV Total energy + Delta-G solvation = -3185.247031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.22291 -40.52886 -37.67685 -36.04333 -34.96739 -34.05161 -33.45367 -29.56924 -29.31598 -27.99609 -27.73788 -25.41404 -24.87227 -24.02690 -21.54572 -20.43731 -18.88659 -18.48655 -17.89841 -16.90787 -16.71450 -16.49131 -16.37842 -16.17320 -15.69012 -15.51037 -14.67193 -14.49028 -14.30573 -14.05000 -13.73178 -13.71326 -13.32501 -13.15154 -13.04262 -12.95385 -12.71534 -12.56327 -12.18292 -12.11236 -11.89446 -11.65815 -11.58350 -11.53886 -11.40716 -11.22355 -10.58094 -10.44896 -9.73134 -9.38313 -8.04758 -6.09908 -0.44254 0.05632 1.38079 1.41539 1.48267 1.77839 2.12327 2.46650 2.88094 3.11316 3.13454 3.28337 3.47252 3.88066 3.95700 4.01833 4.03915 4.17884 4.42306 4.56727 4.60712 4.66682 4.78114 4.80180 4.88050 4.88122 4.99106 5.02131 5.06303 5.07971 5.20921 5.38788 5.42166 5.45084 5.58153 5.86487 5.89709 6.04367 6.28264 6.48278 6.91927 7.07017 7.23813 7.53170 9.02178 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010461 B = 0.009182 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.898123 B = 3048.859119 C = 5068.187452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.162 3.838 3 C -0.174 4.174 4 C 0.106 3.894 5 C 0.556 3.444 6 O -0.577 6.577 7 N -0.571 5.571 8 C 0.246 3.754 9 C -0.505 4.505 10 H 0.030 0.970 11 C 0.036 3.964 12 N -0.910 5.910 13 Si 0.934 3.066 14 H -0.278 1.278 15 H -0.279 1.279 16 H -0.286 1.286 17 C 0.116 3.884 18 C -0.103 4.103 19 C -0.140 4.140 20 C -0.134 4.134 21 N -0.454 5.454 22 C 0.278 3.722 23 N -0.518 5.518 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.168 0.832 28 H 0.015 0.985 29 H 0.072 0.928 30 H 0.262 0.738 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.033 0.967 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.291 5.613 4.010 10.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.013 3.987 3 C -0.197 4.197 4 C -0.041 4.041 5 C 0.343 3.657 6 O -0.459 6.459 7 N -0.298 5.298 8 C 0.126 3.874 9 C -0.544 4.544 10 H 0.048 0.952 11 C -0.163 4.163 12 N -0.550 5.550 13 Si 0.762 3.238 14 H -0.204 1.204 15 H -0.204 1.204 16 H -0.212 1.212 17 C -0.006 4.006 18 C -0.123 4.123 19 C -0.197 4.197 20 C -0.192 4.192 21 N -0.170 5.170 22 C -0.009 4.009 23 N -0.234 5.234 24 H 0.118 0.882 25 H 0.109 0.891 26 H 0.121 0.879 27 H 0.185 0.815 28 H 0.033 0.967 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.917 5.151 4.004 10.259 hybrid contribution 0.270 -0.032 -1.172 1.203 sum -7.647 5.119 2.833 9.628 Atomic orbital electron populations 1.20891 0.84045 1.05452 1.04983 1.22452 0.99650 0.86868 0.89684 1.22927 0.93719 1.02195 1.00897 1.21784 0.92749 0.93008 0.96519 1.18093 0.82858 0.87117 0.77626 1.90638 1.71942 1.29464 1.53831 1.48285 1.05435 1.09844 1.66282 1.19781 0.92258 0.78496 0.96865 1.21277 1.37157 1.03756 0.92234 0.95208 1.25224 0.95712 0.96630 0.98770 1.69989 1.41031 1.14183 1.29809 0.85946 0.78001 0.77905 0.81959 1.20382 1.20401 1.21184 1.21679 0.95829 0.85527 0.97560 1.21415 0.99759 0.96800 0.94319 1.21807 1.00088 0.98258 0.99550 1.21699 1.00398 0.94366 1.02705 1.69370 1.39393 0.98403 1.09787 1.25319 0.86596 0.97687 0.91337 1.68275 1.10363 1.31117 1.13683 0.88234 0.89119 0.87851 0.81452 0.96672 0.91079 0.92855 0.90207 0.91372 0.92677 0.92518 0.91265 0.94743 0.92350 0.91050 0.91769 0.78302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 10.22 71.24 0.73 -0.99 16 2 C 0.16 4.71 6.83 42.64 0.29 5.00 16 3 C -0.17 -5.77 9.41 22.71 0.21 -5.56 16 4 C 0.11 4.38 6.64 41.98 0.28 4.66 16 5 C 0.56 24.47 7.56 86.97 0.66 25.13 16 6 O -0.58 -25.76 16.10 -3.64 -0.06 -25.82 16 7 N -0.57 -24.99 2.21 -828.87 -1.83 -26.82 16 8 C 0.25 12.05 3.65 85.64 0.31 12.36 16 9 C -0.51 -26.99 7.99 25.60 0.20 -26.78 16 10 H 0.03 1.68 7.81 -2.91 -0.02 1.65 16 11 C 0.04 1.94 5.46 84.65 0.46 2.40 16 12 N -0.91 -49.72 13.29 21.45 0.28 -49.43 16 13 Si 0.93 43.20 29.54 68.60 2.03 45.23 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 17 C 0.12 4.32 4.78 86.38 0.41 4.73 16 18 C -0.10 -3.21 3.09 -10.79 -0.03 -3.24 16 19 C -0.14 -4.32 8.38 71.98 0.60 -3.72 16 20 C -0.13 -3.16 9.19 71.98 0.66 -2.49 16 21 N -0.45 -19.81 5.22 -189.16 -0.99 -20.80 16 22 C 0.28 10.70 12.27 180.92 2.22 12.92 16 23 N -0.52 -17.48 10.36 -188.11 -1.95 -19.43 16 24 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.10 1.36 8.10 -2.39 -0.02 1.34 16 27 H 0.17 4.81 7.75 -2.91 -0.02 4.79 16 28 H 0.02 0.79 6.95 -2.39 -0.02 0.77 16 29 H 0.07 3.69 5.27 -2.40 -0.01 3.68 16 30 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 31 H 0.08 2.94 8.02 -2.38 -0.02 2.92 16 32 H 0.07 2.53 7.56 -2.39 -0.02 2.51 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.03 1.24 6.46 -2.38 -0.02 1.23 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.20 7.22 8.06 -2.91 -0.02 7.20 16 Total: -1.00 -63.28 332.91 5.52 -57.75 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 1.02 Total: 14.89 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 7.01 Total: 24.42 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -4.48 Total: -116.48 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.06 Total: -25.82 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -63.28 5.52 -57.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758778314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.565 kcal (2) G-P(sol) polarization free energy of solvation -63.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds