Wall clock time and date at job start Mon Mar 30 2020 01:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38669 * 120.78717 * 2 1 4 4 C 1.38181 * 119.16363 * 180.02562 * 3 2 1 5 5 N 1.31888 * 120.76233 * 359.97438 * 4 3 2 6 6 C 1.31854 * 121.72779 * 359.76643 * 5 4 3 7 7 C 1.38229 * 120.76278 * 0.49226 * 6 5 4 8 8 C 1.50696 * 120.42177 * 179.77376 * 7 6 5 9 9 H 1.09003 * 109.47151 * 144.72026 * 8 7 6 10 10 C 1.52994 * 109.47391 * 264.72476 * 8 7 6 11 11 N 1.46906 * 109.46865 * 24.72472 * 8 7 6 12 12 C 1.46901 * 110.99793 * 155.00158 * 11 8 7 13 13 C 1.50701 * 109.46921 * 179.97438 * 12 11 8 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46835 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99788 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00327 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46999 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46979 * 120.00025 * 21 19 17 24 24 H 1.48496 * 109.47443 * 239.99733 * 21 19 17 25 25 H 1.08999 * 109.47134 * 269.97259 * 1 2 3 26 26 H 1.08997 * 109.47162 * 29.97770 * 1 2 3 27 27 H 1.09002 * 109.47091 * 149.97755 * 1 2 3 28 28 H 1.08000 * 120.41757 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.61952 * 179.97438 * 4 3 2 30 30 H 1.07998 * 119.62242 * 180.25093 * 6 5 4 31 31 H 1.08996 * 109.47268 * 300.00245 * 10 8 7 32 32 H 1.09003 * 109.47340 * 59.99666 * 10 8 7 33 33 H 1.08995 * 109.47731 * 179.97438 * 10 8 7 34 34 H 1.00898 * 110.99995 * 278.95236 * 11 8 7 35 35 H 1.09002 * 109.47401 * 59.99808 * 12 11 8 36 36 H 1.09001 * 109.46874 * 299.99821 * 12 11 8 37 37 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 38 38 H 1.09001 * 109.47487 * 300.00114 * 16 15 13 39 39 H 1.09002 * 109.47182 * 60.00342 * 16 15 13 40 40 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0005 6 6 3.5984 -1.1516 0.0045 7 6 2.2167 -1.1909 -0.0001 8 6 1.4909 -2.5116 0.0006 9 1 0.5786 -2.4245 0.5908 10 6 1.1340 -2.8982 -1.4360 11 7 2.3557 -3.5452 0.5854 12 6 1.5577 -4.6437 1.1461 13 6 2.4770 -5.6826 1.7350 14 8 3.6785 -5.5233 1.6922 15 7 1.9638 -6.7883 2.3100 16 6 2.8574 -7.7979 2.8829 17 6 2.0388 -8.9249 3.4580 18 1 0.9608 -8.8926 3.4020 19 6 2.6662 -9.9974 4.0558 20 7 3.9790 -10.0365 4.1245 21 14 1.6515 -11.3941 4.7693 22 1 0.2080 -11.1114 4.5656 23 1 2.0079 -12.6638 4.0865 24 1 1.9321 -11.5178 6.2222 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6966 2.1377 0.0004 29 1 4.1583 2.0755 -0.0010 30 1 4.1586 -2.0749 0.0085 31 1 0.4924 -2.1313 -1.8699 32 1 2.0462 -2.9853 -2.0262 33 1 0.6094 -3.8536 -1.4356 34 1 3.0179 -3.8893 -0.0936 35 1 0.9569 -5.0960 0.3570 36 1 0.9014 -4.2553 1.9250 37 1 1.0028 -6.9155 2.3445 38 1 3.5135 -8.1865 2.1040 39 1 3.4584 -7.3455 3.6718 40 1 4.4204 -10.7912 4.5447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783003172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:48 Heat of formation + Delta-G solvation = -11.178407 kcal Electronic energy + Delta-G solvation = -20620.207842 eV Core-core repulsion = 17434.397520 eV Total energy + Delta-G solvation = -3185.810323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57746 -38.90443 -36.84960 -34.25366 -34.01098 -32.35490 -31.73846 -29.63554 -28.12573 -27.66556 -25.60125 -24.21130 -22.55386 -21.97348 -20.96887 -19.70577 -17.46637 -16.82948 -16.53209 -15.94862 -15.63277 -15.16450 -15.08726 -14.58818 -14.53176 -14.20331 -13.82718 -13.74787 -13.24052 -13.04301 -12.84694 -12.73778 -12.54677 -12.47151 -12.26639 -11.95482 -11.66793 -11.49441 -11.24898 -10.95794 -10.90676 -10.32857 -9.57077 -9.49314 -9.38688 -9.09194 -9.01493 -8.74617 -8.45735 -7.87589 -6.17250 -4.24261 1.04649 1.14944 3.22720 3.29676 3.32591 3.36948 3.64497 3.76321 4.26453 4.33231 4.45472 4.52594 4.61220 4.71342 4.85548 4.93710 5.03194 5.18825 5.21296 5.24662 5.26416 5.31825 5.41463 5.46460 5.57419 5.60721 5.65460 5.79002 5.85215 5.96298 6.22184 6.62768 6.83597 7.26571 7.32404 7.43921 7.52014 7.66529 7.96392 7.96734 8.62492 8.78100 9.10668 9.42538 10.92984 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036445 B = 0.002862 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.095741 B = 9780.955170 C =10182.009649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.043 4.043 3 C -0.179 4.179 4 C 0.093 3.907 5 N -0.490 5.490 6 C 0.128 3.872 7 C -0.122 4.122 8 C 0.127 3.873 9 H 0.091 0.909 10 C -0.181 4.181 11 N -0.666 5.666 12 C 0.041 3.959 13 C 0.496 3.504 14 O -0.542 6.542 15 N -0.714 5.714 16 C 0.250 3.750 17 C -0.543 4.543 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.131 0.869 29 H 0.151 0.849 30 H 0.162 0.838 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.353 0.647 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.390 0.610 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.048 19.948 -10.766 24.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.051 4.051 3 C -0.199 4.199 4 C -0.064 4.064 5 N -0.198 5.198 6 C -0.029 4.029 7 C -0.124 4.124 8 C 0.016 3.984 9 H 0.109 0.891 10 C -0.240 4.240 11 N -0.298 5.298 12 C -0.091 4.091 13 C 0.280 3.720 14 O -0.420 6.420 15 N -0.363 5.363 16 C 0.130 3.870 17 C -0.581 4.581 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.149 0.851 29 H 0.169 0.831 30 H 0.179 0.821 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.174 0.826 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.222 0.778 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.015 20.232 -10.110 23.996 hybrid contribution -2.143 -1.274 -0.275 2.508 sum -10.158 18.958 -10.385 23.884 Atomic orbital electron populations 1.20891 0.90569 1.03252 1.02995 1.20117 0.96522 0.92479 0.95988 1.21939 0.95666 0.98288 1.04010 1.22732 0.91738 0.96391 0.95539 1.67760 1.41260 0.98501 1.12320 1.22730 0.91306 0.96179 0.92717 1.20650 0.95380 0.94529 1.01883 1.20350 0.95015 0.88787 0.94203 0.89095 1.22528 1.02515 1.01997 0.96952 1.60187 1.17098 1.12471 1.40090 1.21869 0.95631 0.91860 0.99787 1.20323 0.89249 0.82739 0.79724 1.90674 1.15415 1.77471 1.58459 1.46440 1.10899 1.21051 1.57942 1.19096 0.89489 0.84807 0.93649 1.21261 0.93266 1.04465 1.39142 0.91880 1.24961 0.95020 0.98370 0.95719 1.69983 1.07837 1.31170 1.43231 0.86365 0.80089 0.81653 0.78815 1.19656 1.20808 1.20780 0.90430 0.91124 0.90830 0.85146 0.83138 0.82105 0.91730 0.91900 0.91806 0.82615 0.92590 0.88525 0.77809 0.95592 0.95511 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.31 36.01 0.34 -0.44 16 2 C -0.04 -0.40 5.92 -104.31 -0.62 -1.02 16 3 C -0.18 -1.61 9.82 -39.44 -0.39 -2.00 16 4 C 0.09 0.97 11.18 -17.55 -0.20 0.78 16 5 N -0.49 -6.55 10.36 -13.25 -0.14 -6.69 16 6 C 0.13 1.66 10.49 -17.55 -0.18 1.47 16 7 C -0.12 -1.34 5.07 -104.48 -0.53 -1.87 16 8 C 0.13 1.26 2.13 -68.87 -0.15 1.11 16 9 H 0.09 0.81 6.76 -51.93 -0.35 0.46 16 10 C -0.18 -1.48 8.98 37.15 0.33 -1.15 16 11 N -0.67 -8.57 4.88 -109.22 -0.53 -9.10 16 12 C 0.04 0.54 5.97 -4.97 -0.03 0.51 16 13 C 0.50 9.57 7.87 -10.98 -0.09 9.48 16 14 O -0.54 -12.86 16.20 5.56 0.09 -12.77 16 15 N -0.71 -14.66 5.55 -61.47 -0.34 -15.00 16 16 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 17 C -0.54 -14.65 9.28 -34.44 -0.32 -14.97 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -26.10 13.29 55.43 0.74 -25.37 16 21 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 27 H 0.07 0.43 5.64 -51.93 -0.29 0.14 16 28 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.16 2.15 6.91 -52.49 -0.36 1.79 16 31 H 0.06 0.45 6.97 -51.93 -0.36 0.09 16 32 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 33 H 0.06 0.50 7.45 -51.93 -0.39 0.11 16 34 H 0.35 4.70 7.62 -39.29 -0.30 4.40 16 35 H 0.06 0.61 7.44 -51.93 -0.39 0.22 16 36 H 0.10 1.13 8.06 -51.93 -0.42 0.71 16 37 H 0.39 6.75 8.32 -40.82 -0.34 6.41 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -33.48 335.87 -7.79 -41.27 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.69 Total: 6.73 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.95 Total: 0.13 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.28 Total: -56.16 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.48 -7.79 -41.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783003172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.090 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds