Wall clock time and date at job start Mon Mar 30 2020 01:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38669 * 120.78717 * 2 1 4 4 C 1.38181 * 119.16363 * 180.02562 * 3 2 1 5 5 N 1.31888 * 120.76233 * 359.97438 * 4 3 2 6 6 C 1.31854 * 121.72779 * 359.76643 * 5 4 3 7 7 C 1.38229 * 120.76278 * 0.49226 * 6 5 4 8 8 C 1.50696 * 120.42177 * 179.77376 * 7 6 5 9 9 H 1.09003 * 109.47151 * 144.72026 * 8 7 6 10 10 C 1.52994 * 109.47391 * 264.72476 * 8 7 6 11 11 N 1.46906 * 109.46865 * 24.72472 * 8 7 6 12 12 C 1.46901 * 110.99793 * 155.00158 * 11 8 7 13 13 C 1.50701 * 109.46921 * 179.97438 * 12 11 8 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46835 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99788 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00327 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46999 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46979 * 120.00025 * 21 19 17 24 24 H 1.48496 * 109.47443 * 239.99733 * 21 19 17 25 25 H 1.08999 * 109.47134 * 269.97259 * 1 2 3 26 26 H 1.08997 * 109.47162 * 29.97770 * 1 2 3 27 27 H 1.09002 * 109.47091 * 149.97755 * 1 2 3 28 28 H 1.08000 * 120.41757 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.61952 * 179.97438 * 4 3 2 30 30 H 1.07998 * 119.62242 * 180.25093 * 6 5 4 31 31 H 1.08996 * 109.47268 * 300.00245 * 10 8 7 32 32 H 1.09003 * 109.47340 * 59.99666 * 10 8 7 33 33 H 1.08995 * 109.47731 * 179.97438 * 10 8 7 34 34 H 1.00898 * 110.99995 * 278.95236 * 11 8 7 35 35 H 1.09002 * 109.47401 * 59.99808 * 12 11 8 36 36 H 1.09001 * 109.46874 * 299.99821 * 12 11 8 37 37 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 38 38 H 1.09001 * 109.47487 * 300.00114 * 16 15 13 39 39 H 1.09002 * 109.47182 * 60.00342 * 16 15 13 40 40 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0005 6 6 3.5984 -1.1516 0.0045 7 6 2.2167 -1.1909 -0.0001 8 6 1.4909 -2.5116 0.0006 9 1 0.5786 -2.4245 0.5908 10 6 1.1340 -2.8982 -1.4360 11 7 2.3557 -3.5452 0.5854 12 6 1.5577 -4.6437 1.1461 13 6 2.4770 -5.6826 1.7350 14 8 3.6785 -5.5233 1.6922 15 7 1.9638 -6.7883 2.3100 16 6 2.8574 -7.7979 2.8829 17 6 2.0388 -8.9249 3.4580 18 1 0.9608 -8.8926 3.4020 19 6 2.6662 -9.9974 4.0558 20 7 3.9790 -10.0365 4.1245 21 14 1.6515 -11.3941 4.7693 22 1 0.2080 -11.1114 4.5656 23 1 2.0079 -12.6638 4.0865 24 1 1.9321 -11.5178 6.2222 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6966 2.1377 0.0004 29 1 4.1583 2.0755 -0.0010 30 1 4.1586 -2.0749 0.0085 31 1 0.4924 -2.1313 -1.8699 32 1 2.0462 -2.9853 -2.0262 33 1 0.6094 -3.8536 -1.4356 34 1 3.0179 -3.8893 -0.0936 35 1 0.9569 -5.0960 0.3570 36 1 0.9014 -4.2553 1.9250 37 1 1.0028 -6.9155 2.3445 38 1 3.5135 -8.1865 2.1040 39 1 3.4584 -7.3455 3.6718 40 1 4.4204 -10.7912 4.5447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783003172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:48 Heat of formation + Delta-G solvation = -36.489926 kcal Electronic energy + Delta-G solvation = -20621.305432 eV Core-core repulsion = 17434.397520 eV Total energy + Delta-G solvation = -3186.907912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.38255 -40.46142 -37.83336 -36.09859 -34.86686 -34.33389 -32.68547 -30.52220 -29.46727 -28.70445 -26.92249 -25.07843 -24.30753 -22.89182 -21.76835 -21.35205 -19.06496 -17.81761 -17.69743 -17.18229 -17.02596 -16.73545 -16.30406 -15.89111 -15.46623 -15.22782 -15.04582 -14.80628 -14.34790 -14.02242 -13.93703 -13.87382 -13.69882 -13.49804 -13.24164 -13.11306 -12.91169 -12.86103 -12.71971 -12.40507 -12.21567 -11.94011 -11.45183 -10.81437 -10.74113 -10.33869 -10.26991 -9.84750 -9.80273 -9.38539 -8.28932 -6.45594 0.25381 0.38450 1.43432 1.44652 1.58078 1.81430 2.29149 2.49295 2.89336 3.06129 3.24615 3.57112 3.85317 3.90308 3.96443 4.01244 4.13011 4.25199 4.37591 4.39585 4.50606 4.59999 4.67723 4.79191 4.82885 4.91385 4.99016 5.09193 5.14255 5.18837 5.25068 5.32135 5.48419 5.50157 5.69854 5.84102 5.85941 6.00675 6.26908 6.66509 6.96171 7.13993 7.24312 7.54748 8.83571 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036445 B = 0.002862 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.095741 B = 9780.955170 C =10182.009649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.044 4.044 3 C -0.173 4.173 4 C 0.077 3.923 5 N -0.527 5.527 6 C 0.099 3.901 7 C -0.129 4.129 8 C 0.133 3.867 9 H 0.110 0.890 10 C -0.175 4.175 11 N -0.687 5.687 12 C 0.059 3.941 13 C 0.490 3.510 14 O -0.594 6.594 15 N -0.708 5.708 16 C 0.267 3.733 17 C -0.553 4.553 18 H 0.086 0.914 19 C 0.001 3.999 20 N -0.933 5.933 21 Si 0.985 3.015 22 H -0.251 1.251 23 H -0.279 1.279 24 H -0.280 1.280 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.164 0.836 29 H 0.173 0.827 30 H 0.141 0.859 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.346 0.654 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.409 0.591 38 H -0.014 1.014 39 H -0.017 1.017 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.152 20.920 -11.108 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.053 4.053 3 C -0.193 4.193 4 C -0.079 4.079 5 N -0.237 5.237 6 C -0.057 4.057 7 C -0.131 4.131 8 C 0.023 3.977 9 H 0.128 0.872 10 C -0.234 4.234 11 N -0.319 5.319 12 C -0.073 4.073 13 C 0.278 3.722 14 O -0.475 6.475 15 N -0.359 5.359 16 C 0.144 3.856 17 C -0.591 4.591 18 H 0.104 0.896 19 C -0.198 4.198 20 N -0.571 5.571 21 Si 0.809 3.191 22 H -0.174 1.174 23 H -0.205 1.205 24 H -0.206 1.206 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.182 0.818 29 H 0.190 0.810 30 H 0.158 0.842 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.166 0.834 35 H 0.110 0.890 36 H 0.141 0.859 37 H 0.245 0.755 38 H 0.004 0.996 39 H 0.001 0.999 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.181 21.234 -10.473 26.626 hybrid contribution -0.804 -1.447 -0.200 1.667 sum -12.985 19.787 -10.672 25.962 Atomic orbital electron populations 1.20976 0.87946 1.04711 1.03873 1.20533 0.98341 0.91785 0.94631 1.22321 0.95074 0.99707 1.02165 1.23201 0.93088 0.96209 0.95416 1.67671 1.42712 0.99490 1.13786 1.22585 0.92510 0.95667 0.94987 1.20783 0.94580 0.95919 1.01850 1.20412 0.94699 0.87178 0.95369 0.87216 1.22472 1.02349 1.03012 0.95560 1.60151 1.18011 1.12897 1.40864 1.21786 0.94116 0.90203 1.01152 1.21501 0.89507 0.82960 0.78278 1.90654 1.18273 1.78465 1.60068 1.46157 1.11186 1.20560 1.58009 1.18506 0.89758 0.86044 0.91331 1.21663 0.94328 1.04388 1.38752 0.89619 1.26098 0.96158 1.01586 0.95981 1.70151 1.10203 1.32369 1.44407 0.85101 0.79108 0.77380 0.77555 1.17409 1.20516 1.20595 0.89636 0.89245 0.89902 0.81838 0.81021 0.84172 0.89998 0.93125 0.90852 0.83423 0.89038 0.85905 0.75496 0.99599 0.99862 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.31 71.24 0.66 -0.38 16 2 C -0.04 -0.72 5.92 -19.67 -0.12 -0.84 16 3 C -0.17 -2.70 9.82 22.36 0.22 -2.48 16 4 C 0.08 1.57 11.18 84.67 0.95 2.51 16 5 N -0.53 -14.63 10.36 -195.84 -2.03 -16.66 16 6 C 0.10 2.69 10.49 84.69 0.89 3.57 16 7 C -0.13 -2.71 5.07 -19.77 -0.10 -2.81 16 8 C 0.13 2.36 2.13 44.16 0.09 2.46 16 9 H 0.11 1.54 6.76 -2.39 -0.02 1.52 16 10 C -0.18 -2.44 8.98 71.98 0.65 -1.80 16 11 N -0.69 -17.26 4.88 -499.45 -2.44 -19.70 16 12 C 0.06 1.43 5.97 85.56 0.51 1.95 16 13 C 0.49 19.09 7.87 87.66 0.69 19.78 16 14 O -0.59 -29.59 16.20 -3.03 -0.05 -29.64 16 15 N -0.71 -29.19 5.55 -466.78 -2.59 -31.78 16 16 C 0.27 14.69 5.43 85.63 0.46 15.15 16 17 C -0.55 -29.97 9.28 25.60 0.24 -29.74 16 18 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 19 C 0.00 0.06 5.46 84.66 0.46 0.52 16 20 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 21 Si 0.99 42.19 29.54 68.60 2.03 44.22 16 22 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 25 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.09 0.49 8.10 -2.39 -0.02 0.47 16 27 H 0.08 0.59 5.64 -2.39 -0.01 0.58 16 28 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 29 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 30 H 0.14 4.19 6.91 -2.91 -0.02 4.17 16 31 H 0.08 0.87 6.97 -2.39 -0.02 0.85 16 32 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 33 H 0.07 0.89 7.45 -2.39 -0.02 0.88 16 34 H 0.35 9.52 7.62 -89.70 -0.68 8.84 16 35 H 0.09 1.64 7.44 -2.39 -0.02 1.62 16 36 H 0.12 2.42 8.06 -2.39 -0.02 2.40 16 37 H 0.41 13.49 8.32 -92.71 -0.77 12.71 16 38 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 39 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 40 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -77.89 335.87 0.42 -77.47 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.39 Total: 24.63 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 5.61 Total: 7.91 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -6.77 Total: -124.58 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.05 Total: -29.64 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -77.89 0.42 -77.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783003172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.984 kcal (2) G-P(sol) polarization free energy of solvation -77.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds