Wall clock time and date at job start Mon Mar 30 2020 01:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38672 * 120.79048 * 2 1 4 4 C 1.38181 * 119.16190 * 180.22832 * 3 2 1 5 5 N 1.31886 * 120.76837 * 359.79144 * 4 3 2 6 6 C 1.31852 * 121.72215 * 359.97438 * 5 4 3 7 7 C 1.38224 * 120.76740 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.42322 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47043 * 219.99815 * 8 7 6 10 10 C 1.52995 * 109.47458 * 99.99670 * 8 7 6 11 11 N 1.46906 * 109.46893 * 339.99819 * 8 7 6 12 12 C 1.46901 * 110.99793 * 205.00308 * 11 8 7 13 13 C 1.50701 * 109.46921 * 179.97438 * 12 11 8 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46835 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99788 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00327 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46828 * 90.00241 * 21 19 17 23 23 H 1.48495 * 109.46968 * 209.99597 * 21 19 17 24 24 H 1.48499 * 109.47437 * 330.00066 * 21 19 17 25 25 H 1.09001 * 109.47406 * 270.24785 * 1 2 3 26 26 H 1.09004 * 109.47226 * 30.25288 * 1 2 3 27 27 H 1.09005 * 109.47274 * 150.25082 * 1 2 3 28 28 H 1.08004 * 120.42055 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.61808 * 179.76723 * 4 3 2 30 30 H 1.08000 * 119.61978 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47056 * 60.00167 * 10 8 7 32 32 H 1.09000 * 109.47395 * 179.97438 * 10 8 7 33 33 H 1.09003 * 109.47112 * 300.00104 * 10 8 7 34 34 H 1.00899 * 110.99995 * 81.04706 * 11 8 7 35 35 H 1.09002 * 109.47401 * 59.99808 * 12 11 8 36 36 H 1.09001 * 109.46874 * 299.99821 * 12 11 8 37 37 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 38 38 H 1.09001 * 109.47487 * 300.00114 * 16 15 13 39 39 H 1.09002 * 109.47182 * 60.00342 * 16 15 13 40 40 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1520 -0.0048 5 7 4.2403 0.0001 -0.0052 6 6 3.5983 -1.1516 -0.0006 7 6 2.2166 -1.1909 0.0054 8 6 1.4908 -2.5116 0.0112 9 1 0.6230 -2.4521 -0.6458 10 6 1.0318 -2.8351 1.4344 11 7 2.3935 -3.5685 -0.4643 12 6 1.6359 -4.6921 -1.0315 13 6 2.5933 -5.7538 -1.5080 14 8 3.7890 -5.5908 -1.3866 15 7 2.1208 -6.8850 -2.0682 16 6 3.0515 -7.9173 -2.5309 17 6 2.2744 -9.0699 -3.1129 18 1 1.1952 -9.0365 -3.1362 19 6 2.9412 -10.1670 -3.6157 20 7 4.2554 -10.2079 -3.5869 21 14 1.9778 -11.5959 -4.3364 22 1 1.7681 -11.3689 -5.7890 23 1 2.7380 -12.8559 -4.1372 24 1 0.6618 -11.6989 -3.6564 25 1 -0.3634 0.0044 1.0276 26 1 -0.3634 0.8877 -0.5178 27 1 -0.3634 -0.8923 -0.5099 28 1 1.6967 2.1378 0.0004 29 1 4.1582 2.0753 -0.0087 30 1 4.1584 -2.0750 -0.0007 31 1 0.3620 -2.0509 1.7872 32 1 0.5064 -3.7901 1.4385 33 1 1.8995 -2.8945 2.0913 34 1 3.0051 -3.8812 0.2748 35 1 1.0374 -4.3395 -1.8715 36 1 0.9798 -5.1101 -0.2680 37 1 1.1645 -7.0154 -2.1649 38 1 3.7075 -7.4993 -3.2946 39 1 3.6502 -8.2696 -1.6909 40 1 4.7245 -10.9796 -3.9409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783003174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:51 Heat of formation + Delta-G solvation = -10.527595 kcal Electronic energy + Delta-G solvation = -20621.927023 eV Core-core repulsion = 17436.144922 eV Total energy + Delta-G solvation = -3185.782101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57473 -38.90421 -36.84788 -34.25653 -34.01251 -32.35323 -31.71960 -29.63303 -28.13014 -27.66228 -25.60042 -24.20385 -22.55507 -21.97167 -20.97085 -19.70604 -17.46893 -16.81792 -16.52950 -15.94040 -15.64187 -15.16126 -15.08150 -14.64902 -14.47095 -14.19941 -13.80952 -13.77844 -13.23024 -13.09054 -12.84708 -12.72112 -12.56308 -12.44415 -12.23800 -11.95191 -11.66206 -11.49107 -11.23033 -10.98401 -10.88336 -10.32568 -9.58062 -9.48858 -9.40345 -9.08891 -9.01209 -8.74045 -8.45883 -7.87544 -6.16998 -4.24125 1.05288 1.15365 3.23591 3.29561 3.31824 3.36955 3.66203 3.74838 4.26422 4.33102 4.45426 4.52852 4.60221 4.73568 4.81567 4.95615 5.04812 5.18507 5.19016 5.25534 5.30247 5.33119 5.40648 5.44551 5.57164 5.63821 5.65167 5.77778 5.85802 5.97109 6.23298 6.63948 6.83528 7.26403 7.32338 7.43849 7.52124 7.66426 7.96865 7.97451 8.62463 8.78036 9.10626 9.42612 10.93196 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036835 B = 0.002860 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.970178 B = 9788.020500 C =10211.006768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.044 4.044 3 C -0.179 4.179 4 C 0.092 3.908 5 N -0.490 5.490 6 C 0.128 3.872 7 C -0.123 4.123 8 C 0.127 3.873 9 H 0.092 0.908 10 C -0.180 4.180 11 N -0.667 5.667 12 C 0.041 3.959 13 C 0.496 3.504 14 O -0.542 6.542 15 N -0.714 5.714 16 C 0.251 3.749 17 C -0.544 4.544 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.130 0.870 29 H 0.151 0.849 30 H 0.164 0.836 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.354 0.646 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.390 0.610 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.742 20.356 9.387 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.052 4.052 3 C -0.199 4.199 4 C -0.064 4.064 5 N -0.198 5.198 6 C -0.029 4.029 7 C -0.126 4.126 8 C 0.017 3.983 9 H 0.110 0.890 10 C -0.239 4.239 11 N -0.299 5.299 12 C -0.091 4.091 13 C 0.280 3.720 14 O -0.420 6.420 15 N -0.363 5.363 16 C 0.130 3.870 17 C -0.582 4.582 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.148 0.852 29 H 0.168 0.832 30 H 0.181 0.819 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.174 0.826 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.222 0.778 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.660 20.609 8.797 24.023 hybrid contribution -2.183 -1.249 0.254 2.528 sum -10.843 19.360 9.051 23.964 Atomic orbital electron populations 1.20873 0.90585 1.03362 1.02687 1.20103 0.96508 0.92487 0.96094 1.21935 0.95667 0.98275 1.04050 1.22736 0.91737 0.96414 0.95549 1.67774 1.41261 0.98506 1.12307 1.22790 0.91344 0.96220 0.92550 1.20655 0.95418 0.94507 1.01995 1.20360 0.94224 0.88591 0.95171 0.89022 1.22504 1.02211 1.02153 0.97025 1.60181 1.20092 1.10575 1.39071 1.21867 0.95580 0.91433 1.00269 1.20321 0.89420 0.82980 0.79309 1.90674 1.16153 1.78748 1.56448 1.46440 1.11052 1.18652 1.60186 1.19091 0.88734 0.84205 0.94974 1.21224 0.93278 1.02268 1.41442 0.91933 1.24958 0.94949 0.98515 0.95619 1.69972 1.06761 1.30501 1.44995 0.86418 0.79726 0.81360 0.79414 1.20449 1.20999 1.19778 0.90598 0.91136 0.90825 0.85164 0.83160 0.81852 0.91758 0.91849 0.91957 0.82587 0.88534 0.92572 0.77812 0.95523 0.95584 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.06 36.00 0.33 -0.43 16 2 C -0.04 -0.41 5.92 -104.32 -0.62 -1.02 16 3 C -0.18 -1.61 9.82 -39.44 -0.39 -2.00 16 4 C 0.09 0.97 11.18 -17.55 -0.20 0.77 16 5 N -0.49 -6.59 10.36 -13.25 -0.14 -6.72 16 6 C 0.13 1.67 10.49 -17.55 -0.18 1.49 16 7 C -0.12 -1.35 5.10 -104.48 -0.53 -1.89 16 8 C 0.13 1.25 2.28 -68.86 -0.16 1.10 16 9 H 0.09 0.82 6.17 -51.93 -0.32 0.50 16 10 C -0.18 -1.47 9.11 37.16 0.34 -1.13 16 11 N -0.67 -8.54 4.73 -109.21 -0.52 -9.06 16 12 C 0.04 0.54 5.97 -4.97 -0.03 0.51 16 13 C 0.50 9.55 7.87 -10.98 -0.09 9.47 16 14 O -0.54 -12.83 16.20 5.56 0.09 -12.74 16 15 N -0.71 -14.65 5.55 -61.47 -0.34 -14.99 16 16 C 0.25 6.61 5.43 -5.19 -0.03 6.59 16 17 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 18 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -26.12 13.29 55.43 0.74 -25.38 16 21 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H 0.08 0.40 7.89 -51.93 -0.41 -0.01 16 26 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 27 H 0.07 0.45 6.26 -51.93 -0.33 0.12 16 28 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 29 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 30 H 0.16 2.23 6.86 -52.49 -0.36 1.87 16 31 H 0.06 0.45 7.28 -51.93 -0.38 0.07 16 32 H 0.06 0.49 7.45 -51.93 -0.39 0.11 16 33 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 34 H 0.35 4.70 7.73 -39.29 -0.30 4.40 16 35 H 0.10 1.12 8.06 -51.93 -0.42 0.70 16 36 H 0.06 0.61 7.44 -51.93 -0.39 0.22 16 37 H 0.39 6.74 8.32 -40.82 -0.34 6.40 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -33.41 335.93 -7.79 -41.20 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.70 Total: 6.77 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.97 Total: 0.11 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.26 Total: -56.15 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.41 -7.79 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783003174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.671 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds